Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome
Wollrab C, Heitkam T, Holtgräwe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T (2012)
The Plant Journal 72(4): 636-651.
Zeitschriftenaufsatz
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Autor*in
Wollrab, Cora;
Heitkam, Tony;
Holtgräwe, DanielaUniBi ;
Weisshaar, BerndUniBi ;
Minoche, André E;
Dohm, Juliane C;
Himmelbauer, Heinz;
Schmidt, Thomas
Einrichtung
Abstract / Bemerkung
LTR retrotransposons and retroviruses are closely related. Although a viral envelope gene is found in some LTR retrotransposons and all retroviruses, only the latter show infectivity. The identification of Ty3-gypsy-like retrotransposons possessing putative envelope-like open reading frames blurred the taxonomical borders and led to the establishment of the Errantivirus, Metavirus and Chromovirus genera within the Metaviridae. Only a few plant Errantiviruses have been described, and their evolutionary history is not well understood. In this study, we investigated 27 retroelements of four abundant Elbe retrotransposon families belonging to the Errantiviruses in Beta vulgaris (sugar beet). Retroelements of the Elbe lineage integrated between 0.02 and 5.59 million years ago, and show family-specific variations in autonomy and degree of rearrangements: while Elbe3 members are highly fragmented, often truncated and present in a high number of solo LTRs, Elbe2 members are mainly autonomous. We observed extensive reshuffling of structural motifs across families, leading to the formation of new retrotransposon families. Elbe retrotransposons harbor a typical envelope-like gene, often encoding transmembrane domains. During the course of Elbe evolution, the additional open reading frames have been strongly modified or independently acquired. Taken together, the Elbe lineage serves as retrotransposon model reflecting the various stages in Errantivirus evolution, and allows a detailed analysis of retrotransposon family formation.
Erscheinungsjahr
2012
Zeitschriftentitel
The Plant Journal
Band
72
Ausgabe
4
Seite(n)
636-651
ISSN
0960-7412
Page URI
https://pub.uni-bielefeld.de/record/2532965
Zitieren
Wollrab C, Heitkam T, Holtgräwe D, et al. Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome. The Plant Journal. 2012;72(4):636-651.
Wollrab, C., Heitkam, T., Holtgräwe, D., Weisshaar, B., Minoche, A. E., Dohm, J. C., Himmelbauer, H., et al. (2012). Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome. The Plant Journal, 72(4), 636-651. doi:10.1111/j.1365-313X.2012.05107.x
Wollrab, Cora, Heitkam, Tony, Holtgräwe, Daniela, Weisshaar, Bernd, Minoche, André E, Dohm, Juliane C, Himmelbauer, Heinz, and Schmidt, Thomas. 2012. “Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome”. The Plant Journal 72 (4): 636-651.
Wollrab, C., Heitkam, T., Holtgräwe, D., Weisshaar, B., Minoche, A. E., Dohm, J. C., Himmelbauer, H., and Schmidt, T. (2012). Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome. The Plant Journal 72, 636-651.
Wollrab, C., et al., 2012. Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome. The Plant Journal, 72(4), p 636-651.
C. Wollrab, et al., “Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome”, The Plant Journal, vol. 72, 2012, pp. 636-651.
Wollrab, C., Heitkam, T., Holtgräwe, D., Weisshaar, B., Minoche, A.E., Dohm, J.C., Himmelbauer, H., Schmidt, T.: Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome. The Plant Journal. 72, 636-651 (2012).
Wollrab, Cora, Heitkam, Tony, Holtgräwe, Daniela, Weisshaar, Bernd, Minoche, André E, Dohm, Juliane C, Himmelbauer, Heinz, and Schmidt, Thomas. “Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome”. The Plant Journal 72.4 (2012): 636-651.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
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9 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
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The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age.
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An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris.
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Guidelines: a unified classification system for eukaryotic transposable elements
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Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/gypsy retrotransposons that encode envelope-like proteins.
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Analysis of a c0t-1 library enables the targeted identification of minisatellite and satellite families in Beta vulgaris.
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Zakrzewski F, Wenke T, Holtgrawe D, Weisshaar B, Schmidt T., BMC Plant Biol. 10(), 2010
PMID: 20064260
Material in PUB:
Teil dieser Dissertation
The genome of sugar beet (Beta vulgaris) : assembly, annotation and interpretation of a complex plant genome
Minoche AE (2013)
Bielefeld.
Minoche AE (2013)
Bielefeld.
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