44 Publikationen

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  • [44]
    2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2537912
    Rubiano Castellanos, Claudia Consuelo, Merkle, Thomas, and Nattkemper, Tim Wilhelm. “Using random forest to find Nuclear Export Signals (NESs) in proteins of Arabidopsis thaliana”. Presented at the BIOINFORMATICS Conf., Barcelona, Spain, In Press.
    PUB
     
  • [43]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1994730
    Merkle, Thomas. “Nucleo-cytoplasmic transport of proteins and RNA in plants”. Plant Cell Reports 30.2 (2011): 153-176.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [42]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2379960
    Pedersen, DS, Coppens, F, Ma, L, Antosch, M, Marktl, B, Merkle, Thomas, Beemster, GT, Houben, A, and Grasser, Kluas D. “The plant-specific family of DNA-binding proteins containing three HMG-box domains interacts with mitotic and meiotic chromosomes”. New Phytologist 192.3 (2011): 577-589.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [41]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375640
    Merkle, Thomas, and Grasser, Klaus D. “Unexpected mobility of plant chromatin-associated HMGB proteins”. Plant Signaling & Behavior 6.6 (2011): 878-880.
    PUB | DOI | PubMed | Europe PMC
     
  • [40]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996275
    Niemeier, Sandra, Alves jun., Leonardo, and Merkle, Thomas. “Improvement of the design and generation of highly specific plant knockdown lines using primary synthetic microRNAs (pri-smiRNAs)”. BMC Research Notes 3.1 (2010): 59.
    PUB | DOI | Download (ext.) | PubMed | Europe PMC
     
  • [39]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968236
    Pedersen, Dorthe S., Merkle, Thomas, Marktl, Barbara, Lildballe, Dorte L., Antosch, Martin, Bergmann, Thorsten, Tönsing, Katja, Anselmetti, Dario, and Grasser, Klaus D. “Nucleocytoplasmic Distribution of the Arabidopsis Chromatin-Associated HMGB2/3 and HMGB4 Proteins”. Plant Physiology 154.4 (2010): 1831-1841.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [38]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591539 OA
    Alves jun., Leonardo, Niemeier, Sandra, Hauenschild, Arne, Rehmsmeier, Marc, and Merkle, Thomas. “Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana”. Nucleic Acids Research 37.12 (2009): 4010-4021.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [37]
    2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1996271
    Merkle, Thomas. “Nuclear Export of Proteins and RNA”. Functional Organization of the Plant Nucleus. Ed. Iris Meier and DG Robinson. Berlin, Heidelberg: Springer, 2009.Vol. 14. 55-57.
    PUB | DOI
     
  • [36]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635243
    Grasser, Marion, Kane, Caroline M., Merkle, Thomas, Melzer, Michael, Emmersen, Jeppe, and Grasser, Klaus D. “Transcript Elongation Factor TFIIS Is Involved in Arabidopsis Seed Dormancy”. Journal of Molecular Biology 386.3 (2009): 598-611.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [35]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587614 OA
    Hanano, Shigeru, Stracke, Ralf, Jakoby, Marc, Merkle, Thomas, Domagalska, Malgorzata A., Weisshaar, Bernd, and Davis, Seth J. “A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters”. BMC Genomics 9.1 (2008): 182.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [34]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636583
    Hansen, Frederik T., Madsen, Claus K., Nordland, Anne Mette, Grasser, Marion, Merkle, Thomas, and Grasser, Klaus D. “A Novel Family of Plant DNA-Binding Proteins Containing both HMG-Box and AT-Rich Interaction Domains”. Biochemistry 47.50 (2008): 13207-13214.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [33]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592809
    Kiilerich, Bruno, Stemmer, Christian, Merkle, Thomas, Launholt, Dorte, Gorr, Gilbert, and Grasser, Klaus D. “Chromosomal high mobility group (HMG) proteins of the HMGB-type occurring in the moss Physcomitrella patens”. Gene 407.1-2 (2008): 86-97.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [32]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2316612
    Anselmetti, Dario, Hansmeier, Nicole, Kalinowski, Jörg, Martini, Jörg, Merkle, Thomas, Palmisano, Ralf, Ros, Robert, Schmied, K., Sischka, Andy, and Tönsing, Katja. “Analysis of Subcellular Surface Structure, Function and Dynamics”. Analytical and Bioanalytical Chemistry 387.1 (2007): 83-89.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [31]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593589
    Martini, Joerg, Schmied, Katja, Palmisano, Ralf, Tönsing, Katja, Anselmetti, Dario, and Merkle, Thomas. “Multifocal two-photon laser scanning microscopy combined with photo-activatable GFP for in vivo monitoring of intracellular protein dynamics in real time”. Journal of Structural Biology 158.3 (2007): 401-409.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [30]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595711
    Gronlund, Jesper T., Stemmer, Christian, Lichota, Jacek, Merkle, Thomas, and Grasser, Klaus D. “Functionality of the beta/six site-specific recombination system in tobacco and Arabidopsis: A novel tool for genetic engineering of plant genomes”. Plant Molecular Biology 63.4 (2007): 545-556.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [29]
    2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1946105
    Martini, Joerg, Hellmich, Wibke, Greif, Dominik, Becker, Anke, Merkle, Thomas, Ros, Robert, Ros, Alexandra, Tönsing, Katja, and Anselmetti, Dario. “Systems nanobiology: from quantitative single molecule biophysics to microfluidic-based single cell analysis”. Subcellular Proteomics. Ed. Michel Faupel and Eric Bertrand. Heidelberg: Springer, 2007.Vol. 43. 301-321.
    PUB | PubMed | Europe PMC
     
  • [28]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599537
    Grasser, M., Lentz, A., Lichota, J., Merkle, Thomas, and Grasser, K. D. “The Arabidopsis genome encodes structurally and functionally diverse HMGB-type proteins”. Journal of Molecular Biology 358.3 (2006): 654-664.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [27]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596329
    Launholt, Dorte, Merkle, Thomas, Houben, Andreas, Schulz, Alexander, and Grasser, Klaus D. “Arabidopsis chromatin-associated HMGA and HMGB use different nuclear targeting signals and display highly dynamic localization within the nucleus”. The Plant Cell 18.11 (2006): 2904-2918.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [26]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598258
    Jakoby, Marc J., Weinl, Christina, Pusch, Stefan, Kuijt, Suzanne J. H., Merkle, Thomas, Dissmeyer, Nico, and Schnittger, Arp. “Analysis of the subcellular localization, function, and proteolytic control of the Arabidopsis cyclin-dependent kinase inhibitor ICK1/KRP1”. Plant Physiology 141.4 (2006): 1293-1305.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [25]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597619
    Kaminaka, Hironori, Naeke, Christian, Epple, Petra, Dittgen, Jan, Schuetze, Katia, Chaban, Christina, Holt, Ben F., III, Merkle, Thomas, Schaefer, Eberhard, Harter, Klaus, and Dangl, Jeffery L. “bZIP10-LSD1 antagonism modulates basal defense and cell death in Arabidopsis following infection”. The EMBO JOURNAL 25.18 (2006): 4400-4411.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [24]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996224
    Vetter, Guillaume, Hily, Jean-Michel, Klein, Elodie, Schmidlin, Laure, Haas, Muriel, Merkle, Thomas, and Gilmer, David. “Nucleo-cytoplasmic shuttling of the beet necrotic yellow vein virus RNA-3-encoded p25 protein”. The Journal of General Virology 85.8 (2004): 2459-2469.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [23]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996206
    Grasser, Klaus D, Grill, Simon, Duroux, Meg, Launholt, Dorte, Thomsen, Malene S, Nielsen, Birthe V, Nielsen, Hanne K, and Merkle, Thomas. “HMGB6 from Arabidopsis thaliana specifies a novel type of plant chromosomal HMGB protein”. Biochemistry 43.5 (2004): 1309-1314.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [22]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2439047
    Ziemienowicz, Alicja, Haasen, Dorothea, Staiger, Dorothee, and Merkle, Thomas. “Arabidopsis transportin1 is the nuclear import receptor for the circadian clock-regulated RNA-binding protein AtGRP7”. Plant Molecular Biology 53.1/2 (2003): 201-212.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [21]
    2003 | Zeitschriftenaufsatz | PUB-ID: 1867296
    Merkle, Thomas. “Nucleo-cytoplasmic partitioning of proteins in plants: implications for the regulation of environmental and developmental signalling”. Current Genetics 44.5 (2003): 231-260.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [20]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867297
    Haasen, D., and Merkle, Thomas. “Characterisation of an Arabidopsis thaliana homologue of the nuclear export receptor CAS by its interaction with Importin alpha.”. Plant Biology 4 (2002): 432-439.
    PUB
     
  • [19]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867299
    Huang, K., Merkle, Thomas, and Beck, C.F. “Isolation and characterization of a Chlamydomonas gene that encodes a putative blue-light photoreceptor of the phototropin family.”. Plant Physiology 115.4 (2002): 613-622.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867302
    Karsies, A., Merkle, Thomas, Szurek, B., Bonas, U., Hohn, T., and Leclerc, D. “Regulated nuclear targeting of cauliflower mosaic virus”. Journal of General Virology 83.7 (2002): 1783-1790.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [17]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867312
    Merkle, Thomas. “Nuclear import and export of proteins in plants: a tool for the regulation of signalling”. Planta 213.4 (2001): 499-517.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867317
    Ziemienowicz, A., Merkle, Thomas, Schoumacher, F., Hohn, B., and Rossi, L. “Import of agrobacterium T-DNA into plant nuclei: two distinct functions of VirD2 and VirE2 proteins”. The Plant Cell 13.2 (2001): 369-384.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [15]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867313
    Köhler, C., Merkle, Thomas, Roby, D., and Neuhaus, G. “Developmentally regulated expression of a cyclic nucleotide-gated ion channel from Arabidopsis indicates its involvement in programmed cell death”. Planta 213.3 (2001): 327-332.
    PUB | DOI | PubMed | Europe PMC
     
  • [14]
    2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867322
    Röttgers, K., Krohn, N.M., Lichota, J., Stemmer, C., Merkle, Thomas, and Grasser, K.D. “DNA-interactions and nuclear localisation of the chromosomal HMG domain protein SSRP1 from maize.”. The Plant Journal 23.3 (2000): 395-405.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867328
    Obrdlik, P., Neuhaus, G., and Merkle, Thomas. “Plant heterotrimeric G protein beta subunit is associated with membranes via protein interactions involving coiled-coil formation.”. FEBS Letters 476.3 (2000): 208-212.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867331
    Haasen, D., Neuhaus, G., and Merkle, Thomas. “Isolaton and sequence analysis of a genomic clone of the nuclear export receptor AtXPO1 (AtCRM1) from Arabidopsis thaliana”. Plant Physiology 121 (1999): 311-311.
    PUB
     
  • [11]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867334
    Haasen, D., Köhler, C., Neuhaus, G., and Merkle, Thomas. “Nuclear export of proteins in plants: AtXPO1 is the export receptor for leucine-rich nuclear export signals in Arabidopsis thaliana”. The Plant Journal 20.6 (1999): 695-705.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [10]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867338
    Köhler, C., Merkle, Thomas, and Neuhaus, G. “Characterisation of a novel gene family of putative cyclic nucleotide- and calmodulin-regulated ion channels in Arabidopsis thaliana”. The Plant Journal 18.1 (1999): 97-104.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [9]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867341
    Schledz, M., Leclerc, D., Neuhaus, G., and Merkle, Thomas. “Characterization of four cDNAs encoding different Importin alpha homologues from Arabidopsis thaliana, designated AtIMPa1-4.”. Plant Physiology 116 (1998): 868-868.
    PUB | GenBank
     
  • [8]
    1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867345
    Nagy, F., and Merkle, Thomas. “Nuclear import of proteins: putative import factors and development of in vitro import systems in higher plants”. Trends Plant Science 2.12 (1997): 458-464.
    PUB
     
  • [7]
    1997 | Zeitschriftenaufsatz | PUB-ID: 1867347
    Haizel, T., Merkle, Thomas, Pay, A., Fejes, E., and Nagy, F. “Characterization of proteins that interact with the GTP-bound form of the regulatory GTPase Ran in Arabidopsis.”. The Plant Journal 11.1 (1997): 93-103.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [6]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092358
    Merkle, Thomas, Leclerc, D, Marshallsay, C, and Nagy, F. “A plant in vitro system for the nuclear import of proteins”. The Plant Journal 10.6 (1996): 1177-1186.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867356
    Haizel, T., Merkle, Thomas, Turck, F., and Nagy, F. “Characterization of membrane-bound small GTP-binding proteins from Nicotiana tabacum”. Plant Physiology 108.1 (1995): 59-67.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [4]
    1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092391
    Merkle, Thomas, Haizel, T., Matsumoto, T., Harter, K., Dallmann, G., and Nagy, F. “Phenotype of the fission yeast cell cycle regulatory mutant pim1-46 is suppressed by a tobacco cDNA encoding a small, Ran-like GTP-binding protein”. The Plant Journal 6.4 (1994): 555-565.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [3]
    1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092408
    Merkle, Thomas, Frohnmeyer, H. J., Schulze-Lefert, P., Dangl, J. L., Hahlbrock, K., and Schafer, E. “Analysis of the parsley chalcone-synthase promoter in response to different light qualities”. Planta 193.2 (1994): 275-282.
    PUB | WoS | PubMed | Europe PMC
     
  • [2]
    1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092443
    Merkle, Thomas, Krenz, M., Wenng, A, and Schafer, E. “Nucleotide sequence and deduced amino acid sequence of a gene encoding the 23 kDa polypeptide of the oxygen-evolving complex from mustard (Sinapis alba L.)”. Plant Molecular Biology 14.5 (1990): 889-890.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [1]
    1988 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2395115
    Kircher, S, Merkle, Thomas, Schafer, E, and Nagy, F. “Effect of cycloheximide on the inverse control by phytochrome of the expression of two nuclear genes in barley (Hordeum vulgare L.)”. Plant Cell Physiology 29 (1988): 1251-1254.
    PUB
     

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