44 Publikationen
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2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2537912Rubiano Castellanos, Claudia Consuelo, Merkle, Thomas, and Nattkemper, Tim Wilhelm. “Using random forest to find Nuclear Export Signals (NESs) in proteins of Arabidopsis thaliana”. Presented at the BIOINFORMATICS Conf., Barcelona, Spain, In Press.PUB
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1994730Merkle, Thomas. “Nucleo-cytoplasmic transport of proteins and RNA in plants”. Plant Cell Reports 30.2 (2011): 153-176.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2379960Pedersen, DS, Coppens, F, Ma, L, Antosch, M, Marktl, B, Merkle, Thomas, Beemster, GT, Houben, A, and Grasser, Kluas D. “The plant-specific family of DNA-binding proteins containing three HMG-box domains interacts with mitotic and meiotic chromosomes”. New Phytologist 192.3 (2011): 577-589.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375640Merkle, Thomas, and Grasser, Klaus D. “Unexpected mobility of plant chromatin-associated HMGB proteins”. Plant Signaling & Behavior 6.6 (2011): 878-880.PUB | DOI | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996275Niemeier, Sandra, Alves jun., Leonardo, and Merkle, Thomas. “Improvement of the design and generation of highly specific plant knockdown lines using primary synthetic microRNAs (pri-smiRNAs)”. BMC Research Notes 3.1 (2010): 59.PUB | DOI | Download (ext.) | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968236Pedersen, Dorthe S., Merkle, Thomas, Marktl, Barbara, Lildballe, Dorte L., Antosch, Martin, Bergmann, Thorsten, Tönsing, Katja, Anselmetti, Dario, and Grasser, Klaus D. “Nucleocytoplasmic Distribution of the Arabidopsis Chromatin-Associated HMGB2/3 and HMGB4 Proteins”. Plant Physiology 154.4 (2010): 1831-1841.PUB | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591539Alves jun., Leonardo, Niemeier, Sandra, Hauenschild, Arne, Rehmsmeier, Marc, and Merkle, Thomas. “Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana”. Nucleic Acids Research 37.12 (2009): 4010-4021.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635243Grasser, Marion, Kane, Caroline M., Merkle, Thomas, Melzer, Michael, Emmersen, Jeppe, and Grasser, Klaus D. “Transcript Elongation Factor TFIIS Is Involved in Arabidopsis Seed Dormancy”. Journal of Molecular Biology 386.3 (2009): 598-611.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587614Hanano, Shigeru, Stracke, Ralf, Jakoby, Marc, Merkle, Thomas, Domagalska, Malgorzata A., Weisshaar, Bernd, and Davis, Seth J. “A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters”. BMC Genomics 9.1 (2008): 182.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636583Hansen, Frederik T., Madsen, Claus K., Nordland, Anne Mette, Grasser, Marion, Merkle, Thomas, and Grasser, Klaus D. “A Novel Family of Plant DNA-Binding Proteins Containing both HMG-Box and AT-Rich Interaction Domains”. Biochemistry 47.50 (2008): 13207-13214.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592809Kiilerich, Bruno, Stemmer, Christian, Merkle, Thomas, Launholt, Dorte, Gorr, Gilbert, and Grasser, Klaus D. “Chromosomal high mobility group (HMG) proteins of the HMGB-type occurring in the moss Physcomitrella patens”. Gene 407.1-2 (2008): 86-97.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2316612Anselmetti, Dario, Hansmeier, Nicole, Kalinowski, Jörg, Martini, Jörg, Merkle, Thomas, Palmisano, Ralf, Ros, Robert, Schmied, K., Sischka, Andy, and Tönsing, Katja. “Analysis of Subcellular Surface Structure, Function and Dynamics”. Analytical and Bioanalytical Chemistry 387.1 (2007): 83-89.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593589Martini, Joerg, Schmied, Katja, Palmisano, Ralf, Tönsing, Katja, Anselmetti, Dario, and Merkle, Thomas. “Multifocal two-photon laser scanning microscopy combined with photo-activatable GFP for in vivo monitoring of intracellular protein dynamics in real time”. Journal of Structural Biology 158.3 (2007): 401-409.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595711Gronlund, Jesper T., Stemmer, Christian, Lichota, Jacek, Merkle, Thomas, and Grasser, Klaus D. “Functionality of the beta/six site-specific recombination system in tobacco and Arabidopsis: A novel tool for genetic engineering of plant genomes”. Plant Molecular Biology 63.4 (2007): 545-556.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1946105Martini, Joerg, Hellmich, Wibke, Greif, Dominik, Becker, Anke, Merkle, Thomas, Ros, Robert, Ros, Alexandra, Tönsing, Katja, and Anselmetti, Dario. “Systems nanobiology: from quantitative single molecule biophysics to microfluidic-based single cell analysis”. Subcellular Proteomics. Ed. Michel Faupel and Eric Bertrand. Heidelberg: Springer, 2007.Vol. 43. 301-321.PUB | PubMed | Europe PMC
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599537Grasser, M., Lentz, A., Lichota, J., Merkle, Thomas, and Grasser, K. D. “The Arabidopsis genome encodes structurally and functionally diverse HMGB-type proteins”. Journal of Molecular Biology 358.3 (2006): 654-664.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596329Launholt, Dorte, Merkle, Thomas, Houben, Andreas, Schulz, Alexander, and Grasser, Klaus D. “Arabidopsis chromatin-associated HMGA and HMGB use different nuclear targeting signals and display highly dynamic localization within the nucleus”. The Plant Cell 18.11 (2006): 2904-2918.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598258Jakoby, Marc J., Weinl, Christina, Pusch, Stefan, Kuijt, Suzanne J. H., Merkle, Thomas, Dissmeyer, Nico, and Schnittger, Arp. “Analysis of the subcellular localization, function, and proteolytic control of the Arabidopsis cyclin-dependent kinase inhibitor ICK1/KRP1”. Plant Physiology 141.4 (2006): 1293-1305.PUB | DOI | WoS | PubMed | Europe PMC | GenBank
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597619Kaminaka, Hironori, Naeke, Christian, Epple, Petra, Dittgen, Jan, Schuetze, Katia, Chaban, Christina, Holt, Ben F., III, Merkle, Thomas, Schaefer, Eberhard, Harter, Klaus, and Dangl, Jeffery L. “bZIP10-LSD1 antagonism modulates basal defense and cell death in Arabidopsis following infection”. The EMBO JOURNAL 25.18 (2006): 4400-4411.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996224Vetter, Guillaume, Hily, Jean-Michel, Klein, Elodie, Schmidlin, Laure, Haas, Muriel, Merkle, Thomas, and Gilmer, David. “Nucleo-cytoplasmic shuttling of the beet necrotic yellow vein virus RNA-3-encoded p25 protein”. The Journal of General Virology 85.8 (2004): 2459-2469.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996206Grasser, Klaus D, Grill, Simon, Duroux, Meg, Launholt, Dorte, Thomsen, Malene S, Nielsen, Birthe V, Nielsen, Hanne K, and Merkle, Thomas. “HMGB6 from Arabidopsis thaliana specifies a novel type of plant chromosomal HMGB protein”. Biochemistry 43.5 (2004): 1309-1314.PUB | DOI | WoS | PubMed | Europe PMC
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2439047Ziemienowicz, Alicja, Haasen, Dorothea, Staiger, Dorothee, and Merkle, Thomas. “Arabidopsis transportin1 is the nuclear import receptor for the circadian clock-regulated RNA-binding protein AtGRP7”. Plant Molecular Biology 53.1/2 (2003): 201-212.PUB | DOI | WoS | PubMed | Europe PMC
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2003 | Zeitschriftenaufsatz | PUB-ID: 1867296Merkle, Thomas. “Nucleo-cytoplasmic partitioning of proteins in plants: implications for the regulation of environmental and developmental signalling”. Current Genetics 44.5 (2003): 231-260.PUB | DOI | WoS | PubMed | Europe PMC
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867297Haasen, D., and Merkle, Thomas. “Characterisation of an Arabidopsis thaliana homologue of the nuclear export receptor CAS by its interaction with Importin alpha.”. Plant Biology 4 (2002): 432-439.PUB
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867299Huang, K., Merkle, Thomas, and Beck, C.F. “Isolation and characterization of a Chlamydomonas gene that encodes a putative blue-light photoreceptor of the phototropin family.”. Plant Physiology 115.4 (2002): 613-622.PUB | DOI | WoS | PubMed | Europe PMC
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867302Karsies, A., Merkle, Thomas, Szurek, B., Bonas, U., Hohn, T., and Leclerc, D. “Regulated nuclear targeting of cauliflower mosaic virus”. Journal of General Virology 83.7 (2002): 1783-1790.PUB | DOI | WoS | PubMed | Europe PMC
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867312Merkle, Thomas. “Nuclear import and export of proteins in plants: a tool for the regulation of signalling”. Planta 213.4 (2001): 499-517.PUB | DOI | WoS | PubMed | Europe PMC
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867317Ziemienowicz, A., Merkle, Thomas, Schoumacher, F., Hohn, B., and Rossi, L. “Import of agrobacterium T-DNA into plant nuclei: two distinct functions of VirD2 and VirE2 proteins”. The Plant Cell 13.2 (2001): 369-384.PUB | DOI | WoS | PubMed | Europe PMC
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867313Köhler, C., Merkle, Thomas, Roby, D., and Neuhaus, G. “Developmentally regulated expression of a cyclic nucleotide-gated ion channel from Arabidopsis indicates its involvement in programmed cell death”. Planta 213.3 (2001): 327-332.PUB | DOI | PubMed | Europe PMC
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867322Röttgers, K., Krohn, N.M., Lichota, J., Stemmer, C., Merkle, Thomas, and Grasser, K.D. “DNA-interactions and nuclear localisation of the chromosomal HMG domain protein SSRP1 from maize.”. The Plant Journal 23.3 (2000): 395-405.PUB | DOI | WoS | PubMed | Europe PMC
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867328Obrdlik, P., Neuhaus, G., and Merkle, Thomas. “Plant heterotrimeric G protein beta subunit is associated with membranes via protein interactions involving coiled-coil formation.”. FEBS Letters 476.3 (2000): 208-212.PUB | DOI | WoS | PubMed | Europe PMC
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1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867331Haasen, D., Neuhaus, G., and Merkle, Thomas. “Isolaton and sequence analysis of a genomic clone of the nuclear export receptor AtXPO1 (AtCRM1) from Arabidopsis thaliana”. Plant Physiology 121 (1999): 311-311.PUB
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1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867334Haasen, D., Köhler, C., Neuhaus, G., and Merkle, Thomas. “Nuclear export of proteins in plants: AtXPO1 is the export receptor for leucine-rich nuclear export signals in Arabidopsis thaliana”. The Plant Journal 20.6 (1999): 695-705.PUB | DOI | WoS | PubMed | Europe PMC | GenBank
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1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867338Köhler, C., Merkle, Thomas, and Neuhaus, G. “Characterisation of a novel gene family of putative cyclic nucleotide- and calmodulin-regulated ion channels in Arabidopsis thaliana”. The Plant Journal 18.1 (1999): 97-104.PUB | DOI | WoS | PubMed | Europe PMC | GenBank
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1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867341Schledz, M., Leclerc, D., Neuhaus, G., and Merkle, Thomas. “Characterization of four cDNAs encoding different Importin alpha homologues from Arabidopsis thaliana, designated AtIMPa1-4.”. Plant Physiology 116 (1998): 868-868.PUB | GenBank
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1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867345Nagy, F., and Merkle, Thomas. “Nuclear import of proteins: putative import factors and development of in vitro import systems in higher plants”. Trends Plant Science 2.12 (1997): 458-464.PUB
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1997 | Zeitschriftenaufsatz | PUB-ID: 1867347Haizel, T., Merkle, Thomas, Pay, A., Fejes, E., and Nagy, F. “Characterization of proteins that interact with the GTP-bound form of the regulatory GTPase Ran in Arabidopsis.”. The Plant Journal 11.1 (1997): 93-103.PUB | DOI | WoS | PubMed | Europe PMC | GenBank
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1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092358Merkle, Thomas, Leclerc, D, Marshallsay, C, and Nagy, F. “A plant in vitro system for the nuclear import of proteins”. The Plant Journal 10.6 (1996): 1177-1186.PUB | DOI | WoS | PubMed | Europe PMC
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1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092391Merkle, Thomas, Haizel, T., Matsumoto, T., Harter, K., Dallmann, G., and Nagy, F. “Phenotype of the fission yeast cell cycle regulatory mutant pim1-46 is suppressed by a tobacco cDNA encoding a small, Ran-like GTP-binding protein”. The Plant Journal 6.4 (1994): 555-565.PUB | DOI | WoS | PubMed | Europe PMC | GenBank
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1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092408Merkle, Thomas, Frohnmeyer, H. J., Schulze-Lefert, P., Dangl, J. L., Hahlbrock, K., and Schafer, E. “Analysis of the parsley chalcone-synthase promoter in response to different light qualities”. Planta 193.2 (1994): 275-282.PUB | WoS | PubMed | Europe PMC
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1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092443Merkle, Thomas, Krenz, M., Wenng, A, and Schafer, E. “Nucleotide sequence and deduced amino acid sequence of a gene encoding the 23 kDa polypeptide of the oxygen-evolving complex from mustard (Sinapis alba L.)”. Plant Molecular Biology 14.5 (1990): 889-890.PUB | DOI | WoS | PubMed | Europe PMC | GenBank
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1988 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2395115Kircher, S, Merkle, Thomas, Schafer, E, and Nagy, F. “Effect of cycloheximide on the inverse control by phytochrome of the expression of two nuclear genes in barley (Hordeum vulgare L.)”. Plant Cell Physiology 29 (1988): 1251-1254.PUB