PUB - Publikationen an der Universität Bielefeld

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• [44]
  

  2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2537912

  Rubiano Castellanos, C.C., Merkle, T., Nattkemper, T.W.: Using random forest to find Nuclear Export Signals (NESs) in proteins of Arabidopsis thaliana. Presented at the BIOINFORMATICS Conf., Barcelona, Spain (In Press).

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• [43]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1994730

  Merkle, T.: Nucleo-cytoplasmic transport of proteins and RNA in plants. Plant Cell Reports. 30, 153-176 (2011).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [42]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2379960

  Pedersen, D.S., Coppens, F., Ma, L., Antosch, M., Marktl, B., Merkle, T., Beemster, G.T., Houben, A., Grasser, K.D.: The plant-specific family of DNA-binding proteins containing three HMG-box domains interacts with mitotic and meiotic chromosomes. New Phytologist. 192, 577-589 (2011).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [41]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375640

  Merkle, T., Grasser, K.D.: Unexpected mobility of plant chromatin-associated HMGB proteins. Plant Signaling & Behavior. 6, 878-880 (2011).

  PUB | DOI | PubMed | Europe PMC
   
• [40]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996275

  Niemeier, S., Alves jun., L., Merkle, T.: Improvement of the design and generation of highly specific plant knockdown lines using primary synthetic microRNAs (pri-smiRNAs). BMC Research Notes. 3, : 59 (2010).

  PUB | DOI | Download (ext.) | PubMed | Europe PMC
   
• [39]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968236

  Pedersen, D.S., Merkle, T., Marktl, B., Lildballe, D.L., Antosch, M., Bergmann, T., Tönsing, K., Anselmetti, D., Grasser, K.D.: Nucleocytoplasmic Distribution of the Arabidopsis Chromatin-Associated HMGB2/3 and HMGB4 Proteins. Plant Physiology. 154, 1831-1841 (2010).

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• [38]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591539

  Alves jun., L., Niemeier, S., Hauenschild, A., Rehmsmeier, M., Merkle, T.: Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Research. 37, 4010-4021 (2009).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [37]
  

  2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1996271

  Merkle, T.: Nuclear Export of Proteins and RNA. In: Meier, I. and Robinson, D.G. (eds.) Functional Organization of the Plant Nucleus. 14, p. 55-57. Springer, Berlin, Heidelberg (2009).

  PUB | DOI
   
• [36]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635243

  Grasser, M., Kane, C.M., Merkle, T., Melzer, M., Emmersen, J., Grasser, K.D.: Transcript Elongation Factor TFIIS Is Involved in Arabidopsis Seed Dormancy. Journal of Molecular Biology. 386, 598-611 (2009).

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• [35]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587614

  Hanano, S., Stracke, R., Jakoby, M., Merkle, T., Domagalska, M.A., Weisshaar, B., Davis, S.J.: A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters. BMC Genomics. 9, : 182 (2008).

  PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [34]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636583

  Hansen, F.T., Madsen, C.K., Nordland, A.M., Grasser, M., Merkle, T., Grasser, K.D.: A Novel Family of Plant DNA-Binding Proteins Containing both HMG-Box and AT-Rich Interaction Domains. Biochemistry. 47, 13207-13214 (2008).

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• [33]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592809

  Kiilerich, B., Stemmer, C., Merkle, T., Launholt, D., Gorr, G., Grasser, K.D.: Chromosomal high mobility group (HMG) proteins of the HMGB-type occurring in the moss Physcomitrella patens. Gene. 407, 86-97 (2008).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [32]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2316612

  Anselmetti, D., Hansmeier, N., Kalinowski, J., Martini, J., Merkle, T., Palmisano, R., Ros, R., Schmied, K., Sischka, A., Tönsing, K.: Analysis of Subcellular Surface Structure, Function and Dynamics. Analytical and Bioanalytical Chemistry. 387, 83-89 (2007).

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• [31]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593589

  Martini, J., Schmied, K., Palmisano, R., Tönsing, K., Anselmetti, D., Merkle, T.: Multifocal two-photon laser scanning microscopy combined with photo-activatable GFP for in vivo monitoring of intracellular protein dynamics in real time. Journal of Structural Biology. 158, 401-409 (2007).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [30]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595711

  Gronlund, J.T., Stemmer, C., Lichota, J., Merkle, T., Grasser, K.D.: Functionality of the beta/six site-specific recombination system in tobacco and Arabidopsis: A novel tool for genetic engineering of plant genomes. Plant Molecular Biology. 63, 545-556 (2007).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [29]
  

  2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1946105

  Martini, J., Hellmich, W., Greif, D., Becker, A., Merkle, T., Ros, R., Ros, A., Tönsing, K., Anselmetti, D.: Systems nanobiology: from quantitative single molecule biophysics to microfluidic-based single cell analysis. In: Faupel, M. and Bertrand, E. (eds.) Subcellular Proteomics. 43, p. 301-321. Springer, Heidelberg (2007).

  PUB | PubMed | Europe PMC
   
• [28]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599537

  Grasser, M., Lentz, A., Lichota, J., Merkle, T., Grasser, K.D.: The Arabidopsis genome encodes structurally and functionally diverse HMGB-type proteins. Journal of Molecular Biology. 358, 654-664 (2006).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [27]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596329

  Launholt, D., Merkle, T., Houben, A., Schulz, A., Grasser, K.D.: Arabidopsis chromatin-associated HMGA and HMGB use different nuclear targeting signals and display highly dynamic localization within the nucleus. The Plant Cell. 18, 2904-2918 (2006).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [26]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598258

  Jakoby, M.J., Weinl, C., Pusch, S., Kuijt, S.J.H., Merkle, T., Dissmeyer, N., Schnittger, A.: Analysis of the subcellular localization, function, and proteolytic control of the Arabidopsis cyclin-dependent kinase inhibitor ICK1/KRP1. Plant Physiology. 141, 1293-1305 (2006).

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [25]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597619

  Kaminaka, H., Naeke, C., Epple, P., Dittgen, J., Schuetze, K., Chaban, C., Holt, B.F., I.I.I., Merkle, T., Schaefer, E., Harter, K., Dangl, J.L.: bZIP10-LSD1 antagonism modulates basal defense and cell death in Arabidopsis following infection. The EMBO JOURNAL. 25, 4400-4411 (2006).

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• [24]
  

  2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996224

  Vetter, G., Hily, J.-M., Klein, E., Schmidlin, L., Haas, M., Merkle, T., Gilmer, D.: Nucleo-cytoplasmic shuttling of the beet necrotic yellow vein virus RNA-3-encoded p25 protein. The Journal of General Virology. 85, 2459-2469 (2004).

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• [23]
  

  2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996206

  Grasser, K.D., Grill, S., Duroux, M., Launholt, D., Thomsen, M.S., Nielsen, B.V., Nielsen, H.K., Merkle, T.: HMGB6 from Arabidopsis thaliana specifies a novel type of plant chromosomal HMGB protein. Biochemistry. 43, 1309-1314 (2004).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2439047

  Ziemienowicz, A., Haasen, D., Staiger, D., Merkle, T.: Arabidopsis transportin1 is the nuclear import receptor for the circadian clock-regulated RNA-binding protein AtGRP7. Plant Molecular Biology. 53, 201-212 (2003).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2003 | Zeitschriftenaufsatz | PUB-ID: 1867296

  Merkle, T.: Nucleo-cytoplasmic partitioning of proteins in plants: implications for the regulation of environmental and developmental signalling. Current Genetics. 44, 231-260 (2003).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867297

  Haasen, D., Merkle, T.: Characterisation of an Arabidopsis thaliana homologue of the nuclear export receptor CAS by its interaction with Importin alpha. Plant Biology. 4, 432-439 (2002).

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• [19]
  

  2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867299

  Huang, K., Merkle, T., Beck, C.F.: Isolation and characterization of a Chlamydomonas gene that encodes a putative blue-light photoreceptor of the phototropin family. Plant Physiology. 115, 613-622 (2002).

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• [18]
  

  2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867302

  Karsies, A., Merkle, T., Szurek, B., Bonas, U., Hohn, T., Leclerc, D.: Regulated nuclear targeting of cauliflower mosaic virus. Journal of General Virology. 83, 1783-1790 (2002).

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• [17]
  

  2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867312

  Merkle, T.: Nuclear import and export of proteins in plants: a tool for the regulation of signalling. Planta. 213, 499-517 (2001).

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• [16]
  

  2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867317

  Ziemienowicz, A., Merkle, T., Schoumacher, F., Hohn, B., Rossi, L.: Import of agrobacterium T-DNA into plant nuclei: two distinct functions of VirD2 and VirE2 proteins. The Plant Cell. 13, 369-384 (2001).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867313

  Köhler, C., Merkle, T., Roby, D., Neuhaus, G.: Developmentally regulated expression of a cyclic nucleotide-gated ion channel from Arabidopsis indicates its involvement in programmed cell death. Planta. 213, 327-332 (2001).

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• [14]
  

  2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867322

  Röttgers, K., Krohn, N.M., Lichota, J., Stemmer, C., Merkle, T., Grasser, K.D.: DNA-interactions and nuclear localisation of the chromosomal HMG domain protein SSRP1 from maize. The Plant Journal. 23, 395-405 (2000).

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• [13]
  

  2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867328

  Obrdlik, P., Neuhaus, G., Merkle, T.: Plant heterotrimeric G protein beta subunit is associated with membranes via protein interactions involving coiled-coil formation. FEBS Letters. 476, 208-212 (2000).

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• [12]
  

  1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867331

  Haasen, D., Neuhaus, G., Merkle, T.: Isolaton and sequence analysis of a genomic clone of the nuclear export receptor AtXPO1 (AtCRM1) from Arabidopsis thaliana. Plant Physiology. 121, 311-311 (1999).

  PUB
   
• [11]
  

  1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867334

  Haasen, D., Köhler, C., Neuhaus, G., Merkle, T.: Nuclear export of proteins in plants: AtXPO1 is the export receptor for leucine-rich nuclear export signals in Arabidopsis thaliana. The Plant Journal. 20, 695-705 (1999).

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [10]
  

  1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867338

  Köhler, C., Merkle, T., Neuhaus, G.: Characterisation of a novel gene family of putative cyclic nucleotide- and calmodulin-regulated ion channels in Arabidopsis thaliana. The Plant Journal. 18, 97-104 (1999).

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [9]
  

  1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867341

  Schledz, M., Leclerc, D., Neuhaus, G., Merkle, T.: Characterization of four cDNAs encoding different Importin alpha homologues from Arabidopsis thaliana, designated AtIMPa1-4. Plant Physiology. 116, 868-868 (1998).

  PUB | GenBank
   
• [8]
  

  1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867345

  Nagy, F., Merkle, T.: Nuclear import of proteins: putative import factors and development of in vitro import systems in higher plants. Trends Plant Science. 2, 458-464 (1997).

  PUB
   
• [7]
  

  1997 | Zeitschriftenaufsatz | PUB-ID: 1867347

  Haizel, T., Merkle, T., Pay, A., Fejes, E., Nagy, F.: Characterization of proteins that interact with the GTP-bound form of the regulatory GTPase Ran in Arabidopsis. The Plant Journal. 11, 93-103 (1997).

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [6]
  

  1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092358

  Merkle, T., Leclerc, D., Marshallsay, C., Nagy, F.: A plant in vitro system for the nuclear import of proteins. The Plant Journal. 10, 1177-1186 (1996).

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• [5]
  

  1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867356

  Haizel, T., Merkle, T., Turck, F., Nagy, F.: Characterization of membrane-bound small GTP-binding proteins from Nicotiana tabacum. Plant Physiology. 108, 59-67 (1995).

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [4]
  

  1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092391

  Merkle, T., Haizel, T., Matsumoto, T., Harter, K., Dallmann, G., Nagy, F.: Phenotype of the fission yeast cell cycle regulatory mutant pim1-46 is suppressed by a tobacco cDNA encoding a small, Ran-like GTP-binding protein. The Plant Journal. 6, 555-565 (1994).

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [3]
  

  1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092408

  Merkle, T., Frohnmeyer, H.J., Schulze-Lefert, P., Dangl, J.L., Hahlbrock, K., Schafer, E.: Analysis of the parsley chalcone-synthase promoter in response to different light qualities. Planta. 193, 275-282 (1994).

  PUB | WoS | PubMed | Europe PMC
   
• [2]
  

  1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092443

  Merkle, T., Krenz, M., Wenng, A., Schafer, E.: Nucleotide sequence and deduced amino acid sequence of a gene encoding the 23 kDa polypeptide of the oxygen-evolving complex from mustard (Sinapis alba L.). Plant Molecular Biology. 14, 889-890 (1990).

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [1]
  

  1988 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2395115

  Kircher, S., Merkle, T., Schafer, E., Nagy, F.: Effect of cycloheximide on the inverse control by phytochrome of the expression of two nuclear genes in barley (Hordeum vulgare L.). Plant Cell Physiology. 29, 1251-1254 (1988).

  PUB