A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters

Hanano S, Stracke R, Jakoby M, Merkle T, Domagalska MA, Weisshaar B, Davis SJ (2008)
BMC Genomics 9(1): 182.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Autor
; ; ; ; ; ;
Erscheinungsjahr
Zeitschriftentitel
BMC Genomics
Band
9
Ausgabe
1
Art.-Nr.
182
ISSN
PUB-ID

Zitieren

Hanano S, Stracke R, Jakoby M, et al. A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters. BMC Genomics. 2008;9(1): 182.
Hanano, S., Stracke, R., Jakoby, M., Merkle, T., Domagalska, M. A., Weisshaar, B., & Davis, S. J. (2008). A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters. BMC Genomics, 9(1), 182. doi:10.1186/1471-2164-9-182
Hanano, S., Stracke, R., Jakoby, M., Merkle, T., Domagalska, M. A., Weisshaar, B., and Davis, S. J. (2008). A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters. BMC Genomics 9:182.
Hanano, S., et al., 2008. A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters. BMC Genomics, 9(1): 182.
S. Hanano, et al., “A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters”, BMC Genomics, vol. 9, 2008, : 182.
Hanano, S., Stracke, R., Jakoby, M., Merkle, T., Domagalska, M.A., Weisshaar, B., Davis, S.J.: A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters. BMC Genomics. 9, : 182 (2008).
Hanano, Shigeru, Stracke, Ralf, Jakoby, Marc, Merkle, Thomas, Domagalska, Malgorzata A., Weisshaar, Bernd, and Davis, Seth J. “A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters”. BMC Genomics 9.1 (2008): 182.

32 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

AKIN10 activity as a cellular link between metabolism and circadian-clock entrainment in Arabidopsis thaliana.
Sánchez-Villarreal A, Davis AM, Davis SJ., Plant Signal Behav 13(3), 2018
PMID: 29231782
The metabolic sensor AKIN10 modulates the Arabidopsis circadian clock in a light-dependent manner.
Shin J, Sánchez-Villarreal A, Davis AM, Du SX, Berendzen KW, Koncz C, Ding Z, Li C, Davis SJ., Plant Cell Environ 40(7), 2017
PMID: 28054361
Endogenous circadian rhythms in pigment composition induce changes in photochemical efficiency in plant canopies.
García-Plazaola JI, Fernández-Marín B, Ferrio JP, Alday JG, Hoch G, Landais D, Milcu A, Tissue DT, Voltas J, Gessler A, Roy J, Resco de Dios V., Plant Cell Environ 40(7), 2017
PMID: 28098350
Genome-Wide Analysis of Gene Expression Provides New Insights into Cold Responses in Thellungiella salsuginea.
Wang J, Zhang Q, Cui F, Hou L, Zhao S, Xia H, Qiu J, Li T, Zhang Y, Wang X, Zhao C., Front Plant Sci 8(), 2017
PMID: 28533787
Shining a light on the Arabidopsis circadian clock.
Oakenfull RJ, Davis SJ., Plant Cell Environ 40(11), 2017
PMID: 28732105
Modulation of copper deficiency responses by diurnal and circadian rhythms in Arabidopsis thaliana.
Perea-García A, Andrés-Bordería A, Mayo de Andrés S, Sanz A, Davis AM, Davis SJ, Huijser P, Peñarrubia L., J Exp Bot 67(1), 2016
PMID: 26516126
No time for spruce: rapid dampening of circadian rhythms in Picea abies (L. Karst).
Gyllenstrand N, Karlgren A, Clapham D, Holm K, Hall A, Gould PD, Källman T, Lagercrantz U., Plant Cell Physiol 55(3), 2014
PMID: 24363286
The temporal foliar transcriptome of the perennial C3 desert plant Rhazya stricta in its natural environment.
Yates SA, Chernukhin I, Alvarez-Fernandez R, Bechtold U, Baeshen M, Baeshen N, Mutwakil MZ, Sabir J, Lawson T, Mullineaux PM., BMC Plant Biol 14(), 2014
PMID: 24387666
Natural variation reveals that intracellular distribution of ELF3 protein is associated with function in the circadian clock.
Anwer MU, Boikoglou E, Herrero E, Hallstein M, Davis AM, Velikkakam James G, Nagy F, Davis SJ., Elife 3(), 2014
PMID: 24867215
Global approaches for telling time: omics and the Arabidopsis circadian clock.
Chow BY, Kay SA., Semin Cell Dev Biol 24(5), 2013
PMID: 23435351
An overview of natural variation studies in the Arabidopsis thaliana circadian clock.
Anwer MU, Davis SJ., Semin Cell Dev Biol 24(5), 2013
PMID: 23558216
The circadian clock goes genomic.
Staiger D, Shin J, Johansson M, Davis SJ., Genome Biol 14(6), 2013
PMID: 23796230
TIME FOR COFFEE is an essential component in the maintenance of metabolic homeostasis in Arabidopsis thaliana.
Sanchez-Villarreal A, Shin J, Bujdoso N, Obata T, Neumann U, Du SX, Ding Z, Davis AM, Shindo T, Schmelzer E, Sulpice R, Nunes-Nesi A, Stitt M, Fernie AR, Davis SJ., Plant J 76(2), 2013
PMID: 23869666
EARLY FLOWERING4 recruitment of EARLY FLOWERING3 in the nucleus sustains the Arabidopsis circadian clock.
Herrero E, Kolmos E, Bujdoso N, Yuan Y, Wang M, Berns MC, Uhlworm H, Coupland G, Saini R, Jaskolski M, Webb A, Gonçalves J, Davis SJ., Plant Cell 24(2), 2012
PMID: 22327739
Abiotic stress and the plant circadian clock.
Sanchez A, Shin J, Davis SJ., Plant Signal Behav 6(2), 2011
PMID: 21325898
Molecular mechanisms underlying the Arabidopsis circadian clock.
Nakamichi N., Plant Cell Physiol 52(10), 2011
PMID: 21873329
A reduced-function allele reveals that EARLY FLOWERING3 repressive action on the circadian clock is modulated by phytochrome signals in Arabidopsis.
Kolmos E, Herrero E, Bujdoso N, Millar AJ, Tóth R, Gyula P, Nagy F, Davis SJ., Plant Cell 23(9), 2011
PMID: 21908721
Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress.
Yun KY, Park MR, Mohanty B, Herath V, Xu F, Mauleon R, Wijaya E, Bajic VB, Bruskiewich R, de Los Reyes BG., BMC Plant Biol 10(), 2010
PMID: 20100339
The circadian system in higher plants.
Harmer SL., Annu Rev Plant Biol 60(), 2009
PMID: 19575587
Functional characterization of the Arabidopsis bHLH92 transcription factor in abiotic stress.
Jiang Y, Yang B, Deyholos MK., Mol Genet Genomics 282(5), 2009
PMID: 19760256
Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.
Covington MF, Maloof JN, Straume M, Kay SA, Harmer SL., Genome Biol 9(8), 2008
PMID: 18710561

44 References

Daten bereitgestellt von Europe PubMed Central.

Plant circadian rhythms.
McClung CR., Plant Cell 18(4), 2006
PMID: 16595397
Enhanced fitness conferred by naturally occurring variation in the circadian clock.
Michael TP, Salome PA, Yu HJ, Spencer TR, Sharp EL, McPeek MA, Alonso JM, Ecker JR, McClung CR., Science 302(5647), 2003
PMID: 14605371
Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage.
Dodd AN, Salathia N, Hall A, Kevei E, Toth R, Nagy F, Hibberd JM, Millar AJ, Webb AA., Science 309(5734), 2005
PMID: 16040710
ELF4 is required for oscillatory properties of the circadian clock.
McWatters HG, Kolmos E, Hall A, Doyle MR, Amasino RM, Gyula P, Nagy F, Millar AJ, Davis SJ., Plant Physiol. 144(1), 2007
PMID: 17384164
TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock.
Ding Z, Millar AJ, Davis AM, Davis SJ., Plant Cell 19(5), 2007
PMID: 17496120
ELF4 as a central gene in the circadian clock
Kolmos E, Davis SJ., 2007
Watching the hands of the Arabidopsis biological clock.
Davis SJ, Millar AJ., Genome Biol. 2(3), 2001
PMID: 11276428
Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis.
Schaffer R, Landgraf J, Accerbi M, Simon V, Larson M, Wisman E., Plant Cell 13(1), 2001
PMID: 11158533
Orchestrated transcription of key pathways in Arabidopsis by the circadian clock.
Harmer SL, Hogenesch JB, Straume M, Chang HS, Han B, Zhu T, Wang X, Kreps JA, Kay SA., Science 290(5499), 2000
PMID: 11118138
Mind the clock
Hanano S, Davis SJ., 2007
The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering.
Schaffer R, Ramsay N, Samach A, Corden S, Putterill J, Carre IA, Coupland G., Cell 93(7), 1998
PMID: 9657154
LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis.
Mizoguchi T, Wheatley K, Hanzawa Y, Wright L, Mizoguchi M, Song HR, Carre IA, Coupland G., Dev. Cell 2(5), 2002
PMID: 12015970
Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis.
Mizoguchi T, Wright L, Fujiwara S, Cremer F, Lee K, Onouchi H, Mouradov A, Fowler S, Kamada H, Putterill J, Coupland G., Plant Cell 17(8), 2005
PMID: 16006578
Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana.
Locke JC, Kozma-Bognar L, Gould PD, Feher B, Kevei E, Nagy F, Turner MS, Hall A, Millar AJ., Mol. Syst. Biol. 2(), 2006
PMID: 17102804
A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9.
Zeilinger MN, Farre EM, Taylor SR, Kay SA, Doyle FJ 3rd., Mol. Syst. Biol. 2(), 2006
PMID: 17102803
Structural insights into the function of the core-circadian factor TIMING OF CAB2 EXPRESSION 1 (TOC1).
Kolmos E, Schoof H, Plumer M, Davis SJ., J Circadian Rhythms 6(), 2008
PMID: 18298828
LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms.
Hazen SP, Schultz TF, Pruneda-Paz JL, Borevitz JO, Ecker JR, Kay SA., Proc. Natl. Acad. Sci. U.S.A. 102(29), 2005
PMID: 16006522
The novel MYB protein EARLY-PHYTOCHROME-RESPONSIVE1 is a component of a slave circadian oscillator in Arabidopsis.
Kuno N, Moller SG, Shinomura T, Xu X, Chua NH, Furuya M., Plant Cell 15(10), 2003
PMID: 14523250
FLOWERING LOCUS C-dependent and -independent regulation of the circadian clock by the autonomous and vernalization pathways.
Salathia N, Davis SJ, Lynn JR, Michaels SD, Amasino RM, Millar AJ., BMC Plant Biol. 6(), 2006
PMID: 16737527
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, Ratcliffe OJ, Samaha RR, Creelman R, Pilgrim M, Broun P, Zhang JZ, Ghandehari D, Sherman BK, Yu G., Science 290(5499), 2000
PMID: 11118137
The R2R3-MYB gene family in Arabidopsis thaliana.
Stracke R, Werber M, Weisshaar B., Curr. Opin. Plant Biol. 4(5), 2001
PMID: 11597504
bZIP transcription factors in Arabidopsis.
Jakoby M, Weisshaar B, Droge-Laser W, Vicente-Carbajosa J, Tiedemann J, Kroj T, Parcy F; bZIP Research Group., Trends Plant Sci. 7(3), 2002
PMID: 11906833
FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock.
Edwards KD, Anderson PE, Hall A, Salathia NS, Locke JC, Lynn JR, Straume M, Smith JQ, Millar AJ., Plant Cell 18(3), 2006
PMID: 16473970
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W., Plant Physiol. 136(1), 2004
PMID: 15375207
Circadian light input in plants, flies and mammals.
Panda S, Hogenesch JB, Kay SA., Novartis Found. Symp. 253(), 2003
PMID: 14712915
Natural allelic variation in the temperature-compensation mechanisms of the Arabidopsis thaliana circadian clock.
Edwards KD, Lynn JR, Gyula P, Nagy F, Millar AJ., Genetics 170(1), 2005
PMID: 15781708
The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana.
Doyle MR, Davis SJ, Bastow RM, McWatters HG, Kozma-Bognar L, Nagy F, Millar AJ, Amasino RM., Nature 419(6902), 2002
PMID: 12214234
Multiple phytohormones influence distinct parameters of the plant circadian clock.
Hanano S, Domagalska MA, Nagy F, Davis SJ., Genes Cells 11(12), 2006
PMID: 17121545
What makes the Arabidopsis clock tick on time? A review on entrainment
Salome PA, Mcclung CR., 2005
Circadian rhythms: rho-related signals in time-specific light perception.
Kolmos E, Davis SJ., Curr. Biol. 17(18), 2007
PMID: 17878051
System-level identification of transcriptional circuits underlying mammalian circadian clocks.
Ueda HR, Hayashi S, Chen W, Sano M, Machida M, Shigeyoshi Y, Iino M, Hashimoto S., Nat. Genet. 37(2), 2005
PMID: 15665827
FRU (BHLH029) is required for induction of iron mobilization genes in Arabidopsis thaliana.
Jakoby M, Wang HY, Reidt W, Weisshaar B, Bauer P., FEBS Lett. 577(3), 2004
PMID: 15556641
Attenuation of brassinosteroid signaling enhances FLC expression and delays flowering.
Domagalska MA, Schomburg FM, Amasino RM, Vierstra RD, Nagy F, Davis SJ., Development 134(15), 2007
PMID: 17611230
Quantitative analysis of Drosophila period gene transcription in living animals.
Plautz JD, Straume M, Stanewsky R, Jamison CF, Brandes C, Dowse HB, Hall JC, Kay SA., J. Biol. Rhythms 12(3), 1997
PMID: 9181432
Functional independence of circadian clocks that regulate plant gene expression.
Thain SC, Hall A, Millar AJ., Curr. Biol. 10(16), 2000
PMID: 10985381
The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks.
Hall A, Bastow RM, Davis SJ, Hanano S, McWatters HG, Hibberd V, Doyle MR, Sung S, Halliday KJ, Amasino RM, Millar AJ., Plant Cell 15(11), 2003
PMID: 14555691

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 18426557
PubMed | Europe PMC

Suchen in

Google Scholar