PUB - Publikationen an der Universität Bielefeld

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• [44]
  

  2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2537912

  Rubiano Castellanos, C. C., Merkle, T., & Nattkemper, T. W. (In Press). Using random forest to find Nuclear Export Signals (NESs) in proteins of Arabidopsis thaliana. Presented at the BIOINFORMATICS Conf., Barcelona, Spain

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• [43]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1994730

  Merkle, T. (2011). Nucleo-cytoplasmic transport of proteins and RNA in plants. Plant Cell Reports, 30(2), 153-176. https://doi.org/10.1007/s00299-010-0928-3

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• [42]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2379960

  Pedersen, D. S., Coppens, F., Ma, L., Antosch, M., Marktl, B., Merkle, T., Beemster, G. T., et al. (2011). The plant-specific family of DNA-binding proteins containing three HMG-box domains interacts with mitotic and meiotic chromosomes. New Phytologist, 192(3), 577-589. https://doi.org/10.1111/j.1469-8137.2011.03828.x

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• [41]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375640

  Merkle, T., & Grasser, K. D. (2011). Unexpected mobility of plant chromatin-associated HMGB proteins. Plant Signaling & Behavior, 6(6), 878-880. https://doi.org/10.4161/psb.6.6.15255

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• [40]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996275

  Niemeier, S., Alves jun., L., & Merkle, T. (2010). Improvement of the design and generation of highly specific plant knockdown lines using primary synthetic microRNAs (pri-smiRNAs). BMC Research Notes, 3(1), 59. https://doi.org/10.1186/1756-0500-3-59

  PUB | DOI | Download (ext.) | PubMed | Europe PMC
   
• [39]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968236

  Pedersen, D. S., Merkle, T., Marktl, B., Lildballe, D. L., Antosch, M., Bergmann, T., Tönsing, K., et al. (2010). Nucleocytoplasmic Distribution of the Arabidopsis Chromatin-Associated HMGB2/3 and HMGB4 Proteins. Plant Physiology, 154(4), 1831-1841. https://doi.org/10.1104/pp.110.163055

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• [38]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591539

  Alves jun., L., Niemeier, S., Hauenschild, A., Rehmsmeier, M., & Merkle, T. (2009). Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Research, 37(12), 4010-4021. https://doi.org/10.1093/nar/gkp272

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• [37]
  

  2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1996271

  Merkle, T. (2009). Nuclear Export of Proteins and RNA. In I. Meier & D. G. Robinson (Eds.), Functional Organization of the Plant Nucleus (Vol. 14, pp. 55-57). Berlin, Heidelberg: Springer. https://doi.org/10.1007/978-3-540-71058-5-4

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• [36]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635243

  Grasser, M., Kane, C. M., Merkle, T., Melzer, M., Emmersen, J., & Grasser, K. D. (2009). Transcript Elongation Factor TFIIS Is Involved in Arabidopsis Seed Dormancy. Journal of Molecular Biology, 386(3), 598-611. https://doi.org/10.1016/j.jmb.2008.12.066

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• [35]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587614

  Hanano, S., Stracke, R., Jakoby, M., Merkle, T., Domagalska, M. A., Weisshaar, B., & Davis, S. J. (2008). A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters. BMC Genomics, 9(1), 182. https://doi.org/10.1186/1471-2164-9-182

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• [34]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636583

  Hansen, F. T., Madsen, C. K., Nordland, A. M., Grasser, M., Merkle, T., & Grasser, K. D. (2008). A Novel Family of Plant DNA-Binding Proteins Containing both HMG-Box and AT-Rich Interaction Domains. Biochemistry, 47(50), 13207-13214. https://doi.org/10.1021/bi801772k

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• [33]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592809

  Kiilerich, B., Stemmer, C., Merkle, T., Launholt, D., Gorr, G., & Grasser, K. D. (2008). Chromosomal high mobility group (HMG) proteins of the HMGB-type occurring in the moss Physcomitrella patens. Gene, 407(1-2), 86-97. https://doi.org/10.1016/j.gene.2007.09.025

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• [32]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2316612

  Anselmetti, D., Hansmeier, N., Kalinowski, J., Martini, J., Merkle, T., Palmisano, R., Ros, R., et al. (2007). Analysis of Subcellular Surface Structure, Function and Dynamics. Analytical and Bioanalytical Chemistry, 387(1), 83-89. https://doi.org/10.1007/s00216-006-0789-3

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• [31]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593589

  Martini, J., Schmied, K., Palmisano, R., Tönsing, K., Anselmetti, D., & Merkle, T. (2007). Multifocal two-photon laser scanning microscopy combined with photo-activatable GFP for in vivo monitoring of intracellular protein dynamics in real time. Journal of Structural Biology, 158(3), 401-409. https://doi.org/10.1016/j.jsb.2006.12.012

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• [30]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595711

  Gronlund, J. T., Stemmer, C., Lichota, J., Merkle, T., & Grasser, K. D. (2007). Functionality of the beta/six site-specific recombination system in tobacco and Arabidopsis: A novel tool for genetic engineering of plant genomes. Plant Molecular Biology, 63(4), 545-556. https://doi.org/10.1007/s11103-006-9108-9

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• [29]
  

  2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1946105

  Martini, J., Hellmich, W., Greif, D., Becker, A., Merkle, T., Ros, R., Ros, A., et al. (2007). Systems nanobiology: from quantitative single molecule biophysics to microfluidic-based single cell analysis. In M. Faupel & E. Bertrand (Eds.), Subcellular Proteomics (Vol. 43, pp. 301-321). Heidelberg: Springer.

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• [28]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599537

  Grasser, M., Lentz, A., Lichota, J., Merkle, T., & Grasser, K. D. (2006). The Arabidopsis genome encodes structurally and functionally diverse HMGB-type proteins. Journal of Molecular Biology, 358(3), 654-664. https://doi.org/10.1016/j.jmb.2006.02.068

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• [27]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596329

  Launholt, D., Merkle, T., Houben, A., Schulz, A., & Grasser, K. D. (2006). Arabidopsis chromatin-associated HMGA and HMGB use different nuclear targeting signals and display highly dynamic localization within the nucleus. The Plant Cell, 18(11), 2904-2918. https://doi.org/10.1105/tpc.106.047274

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• [26]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598258

  Jakoby, M. J., Weinl, C., Pusch, S., Kuijt, S. J. H., Merkle, T., Dissmeyer, N., & Schnittger, A. (2006). Analysis of the subcellular localization, function, and proteolytic control of the Arabidopsis cyclin-dependent kinase inhibitor ICK1/KRP1. Plant Physiology, 141(4), 1293-1305. https://doi.org/10.1104/pp.106.081406

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [25]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597619

  Kaminaka, H., Naeke, C., Epple, P., Dittgen, J., Schuetze, K., Chaban, C., Holt, B. F. , I. I. I., et al. (2006). bZIP10-LSD1 antagonism modulates basal defense and cell death in Arabidopsis following infection. The EMBO JOURNAL, 25(18), 4400-4411. https://doi.org/10.1038/sj.emboj.7601312

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• [24]
  

  2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996224

  Vetter, G., Hily, J. - M., Klein, E., Schmidlin, L., Haas, M., Merkle, T., & Gilmer, D. (2004). Nucleo-cytoplasmic shuttling of the beet necrotic yellow vein virus RNA-3-encoded p25 protein. The Journal of General Virology, 85(8), 2459-2469. https://doi.org/10.1099/vir.0.80142-0

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• [23]
  

  2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996206

  Grasser, K. D., Grill, S., Duroux, M., Launholt, D., Thomsen, M. S., Nielsen, B. V., Nielsen, H. K., et al. (2004). HMGB6 from Arabidopsis thaliana specifies a novel type of plant chromosomal HMGB protein. Biochemistry, 43(5), 1309-1314. https://doi.org/10.1021/bi035931c

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• [22]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2439047

  Ziemienowicz, A., Haasen, D., Staiger, D., & Merkle, T. (2003). Arabidopsis transportin1 is the nuclear import receptor for the circadian clock-regulated RNA-binding protein AtGRP7. Plant Molecular Biology, 53(1/2), 201-212. https://doi.org/10.1023/B:PLAN.0000009288.46713.1f

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• [21]
  

  2003 | Zeitschriftenaufsatz | PUB-ID: 1867296

  Merkle, T. (2003). Nucleo-cytoplasmic partitioning of proteins in plants: implications for the regulation of environmental and developmental signalling. Current Genetics, 44(5), 231-260. https://doi.org/10.1007/s00294-003-0444-x

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• [20]
  

  2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867297

  Haasen, D., & Merkle, T. (2002). Characterisation of an Arabidopsis thaliana homologue of the nuclear export receptor CAS by its interaction with Importin alpha. Plant Biology, 4, 432-439.

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• [19]
  

  2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867299

  Huang, K., Merkle, T., & Beck, C. F. (2002). Isolation and characterization of a Chlamydomonas gene that encodes a putative blue-light photoreceptor of the phototropin family. Plant Physiology, 115(4), 613-622. https://doi.org/10.1034/j.1399-3054.2002.1150416.x

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• [18]
  

  2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867302

  Karsies, A., Merkle, T., Szurek, B., Bonas, U., Hohn, T., & Leclerc, D. (2002). Regulated nuclear targeting of cauliflower mosaic virus. Journal of General Virology, 83(7), 1783-1790. https://doi.org/10.1099/0022-1317-83-7-1783

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• [17]
  

  2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867312

  Merkle, T. (2001). Nuclear import and export of proteins in plants: a tool for the regulation of signalling. Planta, 213(4), 499-517. https://doi.org/10.1007/s004250100621

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• [16]
  

  2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867317

  Ziemienowicz, A., Merkle, T., Schoumacher, F., Hohn, B., & Rossi, L. (2001). Import of agrobacterium T-DNA into plant nuclei: two distinct functions of VirD2 and VirE2 proteins. The Plant Cell, 13(2), 369-384. https://doi.org/10.1105/tpc.13.2.369

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• [15]
  

  2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867313

  Köhler, C., Merkle, T., Roby, D., & Neuhaus, G. (2001). Developmentally regulated expression of a cyclic nucleotide-gated ion channel from Arabidopsis indicates its involvement in programmed cell death. Planta, 213(3), 327-332. https://doi.org/10.1007/s004250000510

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• [14]
  

  2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867322

  Röttgers, K., Krohn, N. M., Lichota, J., Stemmer, C., Merkle, T., & Grasser, K. D. (2000). DNA-interactions and nuclear localisation of the chromosomal HMG domain protein SSRP1 from maize. The Plant Journal, 23(3), 395-405. https://doi.org/10.1046/j.1365-313x.2000.00801.x

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• [13]
  

  2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867328

  Obrdlik, P., Neuhaus, G., & Merkle, T. (2000). Plant heterotrimeric G protein beta subunit is associated with membranes via protein interactions involving coiled-coil formation. FEBS Letters, 476(3), 208-212. https://doi.org/10.1016/S0014-5793(00)01706-3

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• [12]
  

  1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867331

  Haasen, D., Neuhaus, G., & Merkle, T. (1999). Isolaton and sequence analysis of a genomic clone of the nuclear export receptor AtXPO1 (AtCRM1) from Arabidopsis thaliana. Plant Physiology, 121, 311-311.

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• [11]
  

  1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867334

  Haasen, D., Köhler, C., Neuhaus, G., & Merkle, T. (1999). Nuclear export of proteins in plants: AtXPO1 is the export receptor for leucine-rich nuclear export signals in Arabidopsis thaliana. The Plant Journal, 20(6), 695-705. https://doi.org/10.1046/j.1365-313X.1999.00644.x

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• [10]
  

  1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867338

  Köhler, C., Merkle, T., & Neuhaus, G. (1999). Characterisation of a novel gene family of putative cyclic nucleotide- and calmodulin-regulated ion channels in Arabidopsis thaliana. The Plant Journal, 18(1), 97-104. https://doi.org/10.1046/j.1365-313X.1999.00422.x

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• [9]
  

  1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867341

  Schledz, M., Leclerc, D., Neuhaus, G., & Merkle, T. (1998). Characterization of four cDNAs encoding different Importin alpha homologues from Arabidopsis thaliana, designated AtIMPa1-4. Plant Physiology, 116, 868-868.

  PUB | GenBank
   
• [8]
  

  1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867345

  Nagy, F., & Merkle, T. (1997). Nuclear import of proteins: putative import factors and development of in vitro import systems in higher plants. Trends Plant Science, 2(12), 458-464.

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• [7]
  

  1997 | Zeitschriftenaufsatz | PUB-ID: 1867347

  Haizel, T., Merkle, T., Pay, A., Fejes, E., & Nagy, F. (1997). Characterization of proteins that interact with the GTP-bound form of the regulatory GTPase Ran in Arabidopsis. The Plant Journal, 11(1), 93-103. https://doi.org/10.1046/j.1365-313X.1997.11010093.x

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• [6]
  

  1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092358

  Merkle, T., Leclerc, D., Marshallsay, C., & Nagy, F. (1996). A plant in vitro system for the nuclear import of proteins. The Plant Journal, 10(6), 1177-1186. https://doi.org/10.1046/j.1365-313X.1996.10061177.x

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• [5]
  

  1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1867356

  Haizel, T., Merkle, T., Turck, F., & Nagy, F. (1995). Characterization of membrane-bound small GTP-binding proteins from Nicotiana tabacum. Plant Physiology, 108(1), 59-67. https://doi.org/10.1104/pp.108.1.59

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• [4]
  

  1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092391

  Merkle, T., Haizel, T., Matsumoto, T., Harter, K., Dallmann, G., & Nagy, F. (1994). Phenotype of the fission yeast cell cycle regulatory mutant pim1-46 is suppressed by a tobacco cDNA encoding a small, Ran-like GTP-binding protein. The Plant Journal, 6(4), 555-565. https://doi.org/10.1046/j.1365-313X.1994.6040555.x

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• [3]
  

  1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092408

  Merkle, T., Frohnmeyer, H. J., Schulze-Lefert, P., Dangl, J. L., Hahlbrock, K., & Schafer, E. (1994). Analysis of the parsley chalcone-synthase promoter in response to different light qualities. Planta, 193(2), 275-282.

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• [2]
  

  1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2092443

  Merkle, T., Krenz, M., Wenng, A., & Schafer, E. (1990). Nucleotide sequence and deduced amino acid sequence of a gene encoding the 23 kDa polypeptide of the oxygen-evolving complex from mustard (Sinapis alba L.). Plant Molecular Biology, 14(5), 889-890. https://doi.org/10.1007/BF00016526

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• [1]
  

  1988 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2395115

  Kircher, S., Merkle, T., Schafer, E., & Nagy, F. (1988). Effect of cycloheximide on the inverse control by phytochrome of the expression of two nuclear genes in barley (Hordeum vulgare L.). Plant Cell Physiology, 29, 1251-1254.

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