Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana

Alves jun. L, Niemeier S, Hauenschild A, Rehmsmeier M, Merkle T (2009)
Nucleic Acids Research 37(12): 4010-4021.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
OA
DOI
URN
urn:nbn:de:0070-pub-15915391
Autor*in
Alves jun., LeonardoUniBi; Niemeier, SandraUniBi; Hauenschild, Arne; Rehmsmeier, MarcUniBi; Merkle, ThomasUniBi
Einrichtung
Fakultät für Biologie > Genetik und Genomik der Pflanzen
Technische Fakultät
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Erscheinungsjahr
2009
Zeitschriftentitel
Nucleic Acids Research
Band
37
Ausgabe
12
Seite(n)
4010-4021
ISSN
0305-1048
eISSN
1362-4962
Page URI
https://pub.uni-bielefeld.de/record/1591539

Zitieren

Alves jun. L, Niemeier S, Hauenschild A, Rehmsmeier M, Merkle T. Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Research. 2009;37(12):4010-4021.
Alves jun., L., Niemeier, S., Hauenschild, A., Rehmsmeier, M., & Merkle, T. (2009). Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Research, 37(12), 4010-4021. https://doi.org/10.1093/nar/gkp272
Alves jun., Leonardo, Niemeier, Sandra, Hauenschild, Arne, Rehmsmeier, Marc, and Merkle, Thomas. 2009. “Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana”. Nucleic Acids Research 37 (12): 4010-4021.
Alves jun., L., Niemeier, S., Hauenschild, A., Rehmsmeier, M., and Merkle, T. (2009). Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Research 37, 4010-4021.
Alves jun., L., et al., 2009. Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Research, 37(12), p 4010-4021.
L. Alves jun., et al., “Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana”, Nucleic Acids Research, vol. 37, 2009, pp. 4010-4021.
Alves jun., L., Niemeier, S., Hauenschild, A., Rehmsmeier, M., Merkle, T.: Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Research. 37, 4010-4021 (2009).
Alves jun., Leonardo, Niemeier, Sandra, Hauenschild, Arne, Rehmsmeier, Marc, and Merkle, Thomas. “Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana”. Nucleic Acids Research 37.12 (2009): 4010-4021.
Alle Dateien verfügbar unter der/den folgenden Lizenz(en):
Copyright Statement:
Dieses Objekt ist durch das Urheberrecht und/oder verwandte Schutzrechte geschützt. [...]
Volltext(e)
Name
Access Level
OA Open Access
Zuletzt Hochgeladen
2019-09-06T08:48:01Z
MD5 Prüfsumme
8ae73c240b1bbb64c63b94b7924361ca


50 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
Zheng Z, Reichel M, Deveson I, Wong G, Li J, Millar AA., Plant Physiol 174(3), 2017
PMID: 28515145
Genome-wide identification and evolutionary analyses of bZIP transcription factors in wheat and its relatives and expression profiles of anther development related TabZIP genes.
Li X, Gao S, Tang Y, Li L, Zhang F, Feng B, Fang Z, Ma L, Zhao C., BMC Genomics 16(), 2015
PMID: 26581444
Comprehensive analysis of small RNA-seq data reveals that combination of miRNA with its isomiRs increase the accuracy of target prediction in Arabidopsis thaliana.
Ahmed F, Senthil-Kumar M, Lee S, Dai X, Mysore KS, Zhao PX., RNA Biol 11(11), 2014
PMID: 25629686
Analysis of complementarity requirements for plant microRNA targeting using a Nicotiana benthamiana quantitative transient assay.
Liu Q, Wang F, Axtell MJ., Plant Cell 26(2), 2014
PMID: 24510721
Family-wide survey of miR169s and NF-YAs and their expression profiles response to abiotic stress in maize roots.
Luan M, Xu M, Lu Y, Zhang Q, Zhang L, Zhang C, Fan Y, Lang Z, Wang L., PLoS One 9(3), 2014
PMID: 24633051
Identification and characterization of a subset of microRNAs in wheat (Triticum aestivum L.).
Su C, Yang X, Gao S, Tang Y, Zhao C, Li L., Genomics 103(4), 2014
PMID: 24667243
Virus versus host plant microRNAs: who determines the outcome of the interaction?
Maghuly F, Ramkat RC, Laimer M., PLoS One 9(6), 2014
PMID: 24896088
A reversed framework for the identification of microRNA-target pairs in plants.
Shao C, Chen M, Meng Y., Brief Bioinform 14(3), 2013
PMID: 22811545
Classification and comparison of small RNAs from plants.
Axtell MJ., Annu Rev Plant Biol 64(), 2013
PMID: 23330790
A protodermal miR394 signal defines a region of stem cell competence in the Arabidopsis shoot meristem.
Knauer S, Holt AL, Rubio-Somoza I, Tucker EJ, Hinze A, Pisch M, Javelle M, Timmermans MC, Tucker MR, Laux T., Dev Cell 24(2), 2013
PMID: 23333352
MiR-122 modulates type I interferon expression through blocking suppressor of cytokine signaling 1.
Li A, Song W, Qian J, Li Y, He J, Zhang Q, Li W, Zhai A, Kao W, Hu Y, Li H, Wu J, Ling H, Zhong Z, Zhang F., Int J Biochem Cell Biol 45(4), 2013
PMID: 23348614
Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis.
Yang X, Wang L, Yuan D, Lindsey K, Zhang X., J Exp Bot 64(6), 2013
PMID: 23382553
SQUAMOSA promoter binding protein-like7 regulated microRNA408 is required for vegetative development in Arabidopsis.
Zhang H, Li L., Plant J 74(1), 2013
PMID: 23289771
MicroRNAs and their putative targets in Brassica napus seed maturation.
Huang D, Koh C, Feurtado JA, Tsang EW, Cutler AJ., BMC Genomics 14(), 2013
PMID: 23448243
Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage.
Jeong DH, Thatcher SR, Brown RS, Zhai J, Park S, Rymarquis LA, Meyers BC, Green PJ., Plant Physiol 162(3), 2013
PMID: 23709668
Prediction of microRNA-regulated protein interaction pathways in Arabidopsis using machine learning algorithms.
Kurubanjerdjit N, Huang CH, Lee YL, Tsai JJ, Ng KL., Comput Biol Med 43(11), 2013
PMID: 24209909
MicroRNA or NMD: why have two RNA silencing systems?
Zhang Z, Hu L, Kong X., J Genet Genomics 40(10), 2013
PMID: 24156916
Deep sequencing of small RNAs in plants: applied bioinformatics.
Studholme DJ., Brief Funct Genomics 11(1), 2012
PMID: 22184332
Known and novel post-transcriptional regulatory sequences are conserved across plant families.
Vaughn JN, Ellingson SR, Mignone F, Arnim Av., RNA 18(3), 2012
PMID: 22237150
Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis.
Yang X, Zhang H, Li L., Plant J 70(3), 2012
PMID: 22247970
Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing.
Peláez P, Trejo MS, Iñiguez LP, Estrada-Navarrete G, Covarrubias AA, Reyes JL, Sanchez F., BMC Genomics 13(), 2012
PMID: 22394504
In-silico and in-vivo analyses of EST databases unveil conserved miRNAs from Carthamus tinctorius and Cynara cardunculus.
Catalano D, Pignone D, Sonnante G, Finetti-Sialer MM., BMC Bioinformatics 13 Suppl 4(), 2012
PMID: 22536958
Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach.
Ding J, Li D, Ohler U, Guan J, Zhou S., BMC Genomics 13 Suppl 3(), 2012
PMID: 22759612
Identification of soybean microRNAs involved in soybean cyst nematode infection by deep sequencing.
Li X, Wang X, Zhang S, Liu D, Duan Y, Dong W., PLoS One 7(6), 2012
PMID: 22802924
Identification of new microRNA-regulated genes by conserved targeting in plant species.
Chorostecki U, Crosa VA, Lodeyro AF, Bologna NG, Martin AP, Carrillo N, Schommer C, Palatnik JF., Nucleic Acids Res 40(18), 2012
PMID: 22772987
Characterization of microRNAs expression during maize seed development.
Kang M, Zhao Q, Zhu D, Yu J., BMC Genomics 13(), 2012
PMID: 22853295
Analyzing the microRNA Transcriptome in Plants Using Deep Sequencing Data.
Yang X, Li L., Biology (Basel) 1(2), 2012
PMID: 24832228
AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies.
Jiang Z, Liu X, Peng Z, Wan Y, Ji Y, He W, Wan W, Luo J, Guo H., Nucleic Acids Res 39(database issue), 2011
PMID: 21045062
LSD: a leaf senescence database.
Liu X, Li Z, Jiang Z, Zhao Y, Peng J, Jin J, Guo H, Luo J., Nucleic Acids Res 39(database issue), 2011
PMID: 21097471
Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulation.
Zhang H, He H, Wang X, Wang X, Yang X, Li L, Deng XW., Plant J 65(3), 2011
PMID: 21265889
Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing.
Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS., BMC Plant Biol 11(), 2011
PMID: 21219599
Novel and conserved micrornas in Dalian purple urchin (Strongylocentrotus nudus) identified by next generation sequencing.
Wei Z, Liu X, Feng T, Chang Y., Int J Biol Sci 7(2), 2011
PMID: 21383954
Global analysis of gene-level microRNA expression in Arabidopsis using deep sequencing data.
Yang X, Zhang H, Li L., Genomics 98(1), 2011
PMID: 21473907
Bioinformatic analysis of fruit-specific expressed sequence tag libraries of Diospyros kaki Thunb.: view at the transcriptome at different developmental stages.
Sablok G, Luo C, Lee WS, Rahman F, Tatarinova TV, Harikrishna JA, Luo Z., 3 Biotech 1(1), 2011
PMID: 22558534
High-throughput sequencing, characterization and detection of new and conserved cucumber miRNAs.
Martínez G, Forment J, Llave C, Pallás V, Gómez G., PLoS One 6(5), 2011
PMID: 21603611
Identification of potential microRNAs and their targets in Brassica rapa L.
Dhandapani V, Ramchiary N, Paul P, Kim J, Choi SH, Lee J, Hur Y, Lim YP., Mol Cells 32(1), 2011
PMID: 21647586
Regulation of gene expression in plants through miRNA inactivation.
Ivashuta S, Banks IR, Wiggins BE, Zhang Y, Ziegler TE, Roberts JK, Heck GR., PLoS One 6(6), 2011
PMID: 21731706
Comparative analysis of miRNAs and their targets across four plant species.
Lenz D, May P, Walther D., BMC Res Notes 4(), 2011
PMID: 22067256
Expression profile of small RNAs in Acacia mangium secondary xylem tissue with contrasting lignin content - potential regulatory sequences in monolignol biosynthetic pathway.
Ong SS, Wickneswari R., BMC Genomics 12 Suppl 3(), 2011
PMID: 22369296
microRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis.
Beauclair L, Yu A, Bouché N., Plant J 62(3), 2010
PMID: 20128885
Improvement of the design and generation of highly specific plant knockdown lines using primary synthetic microRNAs (pri-smiRNAs).
Niemeier S, Alves Junior L, Merkle T., BMC Res Notes 3(), 2010
PMID: 20202197
Cleavage of a non-conserved target by a specific miR156 isoform in root apexes of Medicago truncatula.
Naya L, Khan GA, Sorin C, Hartmann C, Crespi M, Lelandais-Brière C., Plant Signal Behav 5(3), 2010
PMID: 20200496
Identification of novel miRNAs and miRNA dependent developmental shifts of gene expression in Arabidopsis thaliana.
Zhan S, Lukens L., PLoS One 5(4), 2010
PMID: 20405016
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.
Bonnet E, He Y, Billiau K, Van de Peer Y., Bioinformatics 26(12), 2010
PMID: 20430753
Analysis of antisense expression by whole genome tiling microarrays and siRNAs suggests mis-annotation of Arabidopsis orphan protein-coding genes.
Richardson CR, Luo QJ, Gontcharova V, Jiang YW, Samanta M, Youn E, Rock CD., PLoS One 5(5), 2010
PMID: 20520764
Systematic analysis of regulation and functions of co-expressed microRNAs in humans.
Liao M, Jiang W, Chen X, Lian B, Li W, Lv Y, Wang Y, Wang S, Li X., Mol Biosyst 6(10), 2010
PMID: 20548996
MicroR159 regulation of most conserved targets in Arabidopsis has negligible phenotypic effects.
Allen RS, Li J, Alonso-Peral MM, White RG, Gubler F, Millar AA., Silence 1(1), 2010
PMID: 21029441
miSolRNA: A tomato micro RNA relational database.
Bazzini AA, Asís R, González V, Bassi S, Conte M, Soria M, Fernie AR, Asurmendi S, Carrari F., BMC Plant Biol 10(), 2010
PMID: 21059227
A genome-wide characterization of microRNA genes in maize.
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D., PLoS Genet 5(11), 2009
PMID: 19936050
MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana.
Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H., BMC Genomics 10(), 2009
PMID: 20042113

78 References

Daten bereitgestellt von Europe PubMed Central.

MicroRNAS and their regulatory roles in plants.
Jones-Rhoades MW, Bartel DP, Bartel B., Annu Rev Plant Biol 57(), 2006
PMID: 16669754
Endogenous and silencing-associated small RNAs in plants.
Llave C, Kasschau KD, Rector MA, Carrington JC., Plant Cell 14(7), 2002
PMID: 12119378
MicroRNAs in plants.
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP., Genes Dev. 16(13), 2002
PMID: 12101121
Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes.
Emery JF, Floyd SK, Alvarez J, Eshed Y, Hawker NP, Izhaki A, Baum SF, Bowman JL., Curr. Biol. 13(20), 2003
PMID: 14561401
Control of leaf morphogenesis by microRNAs.
Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D., Nature 425(6955), 2003
PMID: 12931144
Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes.
Aukerman MJ, Sakai H., Plant Cell 15(11), 2003
PMID: 14555699
The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis.
Baker CC, Sieber P, Wellmer F, Meyerowitz EM., Curr. Biol. 15(4), 2005
PMID: 15723790
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development.
Chen X., Science 303(5666), 2003
PMID: 12893888
The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings.
Gandikota M, Birkenbihl RP, Hohmann S, Cardon GH, Saedler H, Huijser P., Plant J. 49(4), 2007
PMID: 17217458
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development.
Guo HS, Xie Q, Fei JF, Chua NH., Plant Cell 17(5), 2005
PMID: 15829603
MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems.
Laufs P, Peaucelle A, Morin H, Traas J., Development 131(17), 2004
PMID: 15294871
MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs.
Mallory AC, Dugas DV, Bartel DP, Bartel B., Curr. Biol. 14(12), 2004
PMID: 15202996
microRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems.
Kim J, Jung JH, Reyes JL, Kim YS, Kim SY, Chung KS, Kim JA, Lee M, Lee Y, Narry Kim V, Chua NH, Park CM., Plant J. 42(1), 2005
PMID: 15773855
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development.
Vaucheret H, Vazquez F, Crete P, Bartel DP., Genes Dev. 18(10), 2004
PMID: 15131082
Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation.
Xie Z, Kasschau KD, Carrington JC., Curr. Biol. 13(9), 2003
PMID: 12725739
pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene.
Aung K, Lin SI, Wu CC, Huang YT, Su CL, Chiou TJ., Plant Physiol. 141(3), 2006
PMID: 16679417
Regulation of phosphate homeostasis by MicroRNA in Arabidopsis.
Chiou TJ, Aung K, Lin SI, Wu CC, Chiang SF, Su CL., Plant Cell 18(2), 2005
PMID: 16387831
A miRNA involved in phosphate-starvation response in Arabidopsis.
Fujii H, Chiou TJ, Lin SI, Aung K, Zhu JK., Curr. Biol. 15(22), 2005
PMID: 16303564
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.
Jones-Rhoades MW, Bartel DP., Mol. Cell 14(6), 2004
PMID: 15200956
Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance.
Sunkar R, Kapoor A, Zhu JK., Plant Cell 18(8), 2006
PMID: 16861386
Modulation of floral development by a gibberellin-regulated microRNA.
Achard P, Herr A, Baulcombe DC, Harberd NP., Development 131(14), 2004
PMID: 15226253
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction.
Kasschau KD, Xie Z, Allen E, Llave C, Chapman EJ, Krizan KA, Carrington JC., Dev. Cell 4(2), 2003
PMID: 12586064
MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes.
Mallory AC, Bartel DP, Bartel B., Plant Cell 17(5), 2005
PMID: 15829600
ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination.
Reyes JL, Chua NH., Plant J. 49(4), 2007
PMID: 17217461
MicroRNAs: genomics, biogenesis, mechanism, and function.
Bartel DP., Cell 116(2), 2004
PMID: 14744438
MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome.
Bao N, Lye KW, Barton MK., Dev. Cell 7(5), 2004
PMID: 15525527
The microRNA Registry.
Griffiths-Jones S., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681370
Prediction of plant microRNA targets.
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP., Cell 110(4), 2002
PMID: 12202040
microRNA-directed phasing during trans-acting siRNA biogenesis in plants.
Allen E, Xie Z, Gustafson AM, Carrington JC., Cell 121(2), 2005
PMID: 15851028
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana.
Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC., Nat. Genet. 36(12), 2004
PMID: 15565108
Specific effects of microRNAs on the plant transcriptome.
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D., Dev. Cell 8(4), 2005
PMID: 15809034
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis.
Sunkar R, Zhu JK., Plant Cell 16(8), 2004
PMID: 15258262
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets.
Wang XJ, Reyes JL, Chua NH, Gaasterland T., Genome Biol. 5(9), 2004
PMID: 15345049
Highly specific gene silencing by artificial microRNAs in Arabidopsis.
Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D., Plant Cell 18(5), 2006
PMID: 16531494
MicroInspector: a web tool for detection of miRNA binding sites in an RNA sequence.
Rusinov V, Baev V, Minkov IN, Tabler M., Nucleic Acids Res. 33(Web Server issue), 2005
PMID: 15980566
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes.
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC., PLoS ONE 2(2), 2007
PMID: 17299599
Elucidation of the small RNA component of the transcriptome.
Lu C, Tej SS, Luo S, Haudenschild CD, Meyers BC, Green PJ., Science 309(5740), 2005
PMID: 16141074
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP., Genes Dev. 20(24), 2006
PMID: 17182867
Expression of Arabidopsis MIRNA genes.
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC., Plant Physiol. 138(4), 2005
PMID: 16040653
Fast and effective prediction of microRNA/target duplexes.
Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R., RNA 10(10), 2004
PMID: 15383676
RNAhybrid: microRNA target prediction easy, fast and flexible.
Kruger J, Rehmsmeier M., Nucleic Acids Res. 34(Web Server issue), 2006
PMID: 16845047

Eddy SR., 2003
The TIGR Plant Transcript Assemblies database.
Childs KL, Hamilton JP, Zhu W, Ly E, Cheung F, Wu H, Rabinowicz PD, Town CD, Buell CR, Chan AP., Nucleic Acids Res. 35(Database issue), 2006
PMID: 17088284
Nuclear export of proteins in plants: AtXPO1 is the export receptor for leucine-rich nuclear export signals in Arabidopsis thaliana.
Haasen D, Kohler C, Neuhaus G, Merkle T., Plant J. 20(6), 1999
PMID: 10652141
A plant in vitro system for the nuclear import of proteins.
Merkle T, Leclerc D, Marshallsay C, Nagy F., Plant J. 10(6), 1996
PMID: 9011099
Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system.
Hartmann U, Valentine WJ, Christie JM, Hays J, Jenkins GI, Weisshaar B., Plant Mol. Biol. 36(5), 1998
PMID: 9526507

Sambrook J, Russel DW., 2001
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA.
Llave C, Xie Z, Kasschau KD, Carrington JC., Science 297(5589), 2002
PMID: 12242443
Computational prediction of miRNAs in Arabidopsis thaliana.
Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V, Sundaresan V., Genome Res. 15(1), 2005
PMID: 15632092
Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction.
Wu MF, Tian Q, Reed JW., Development 133(21), 2006
PMID: 17021043
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant.
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC., Genome Res. 16(10), 2006
PMID: 16954541
DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana.
Xie Z, Allen E, Wilken A, Carrington JC., Proc. Natl. Acad. Sci. U.S.A. 102(36), 2005
PMID: 16129836
A novel class of MYB factors controls sperm-cell formation in plants.
Rotman N, Durbarry A, Wardle A, Yang WC, Chaboud A, Faure JE, Berger F, Twell D., Curr. Biol. 15(3), 2005
PMID: 15694308
Male germ line development in Arabidopsis. duo pollen mutants reveal gametophytic regulators of generative cell cycle progression.
Durbarry A, Vizir I, Twell D., Plant Physiol. 137(1), 2004
PMID: 15618418
Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319.
Palatnik JF, Wollmann H, Schommer C, Schwab R, Boisbouvier J, Rodriguez R, Warthmann N, Allen E, Dezulian T, Huson D, Carrington JC, Weigel D., Dev. Cell 13(1), 2007
PMID: 17609114
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
German MA, Pillay M, Jeong D-H, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R., 2008
The biosynthesis of D-Galacturonate in plants. functional cloning and characterization of a membrane-anchored UDP-D-Glucuronate 4-epimerase from Arabidopsis.
Molhoj M, Verma R, Reiter WD., Plant Physiol. 135(3), 2004
PMID: 15247385
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana.
Park W, Li J, Song R, Messing J, Chen X., Curr. Biol. 12(17), 2002
PMID: 12225663
Revisiting the principles of microRNA target recognition and mode of action
Brodersen P, Voinnet O., 2009
MicroRNA regulation of gene expression in plants.
Dugas DV, Bartel B., Curr. Opin. Plant Biol. 7(5), 2004
PMID: 15337093
Functions of microRNAs and related small RNAs in plants.
Mallory AC, Vaucheret H., Nat. Genet. 38 Suppl(), 2006
PMID: 16736022
MicroRNAs and their regulatory roles in animals and plants.
Zhang B, Wang Q, Pan X., J. Cell. Physiol. 210(2), 2007
PMID: 17096367
The R2R3-MYB gene family in Arabidopsis thaliana.
Stracke R, Werber M, Weisshaar B., Curr. Opin. Plant Biol. 4(5), 2001
PMID: 11597504
The SPOROCYTELESS gene of Arabidopsis is required for initiation of sporogenesis and encodes a novel nuclear protein.
Yang WC, Ye D, Xu J, Sundaresan V., Genes Dev. 13(16), 1999
PMID: 10465788
The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development.
Millar AA, Gubler F., Plant Cell 17(3), 2005
PMID: 15722475
The role of the Arabidopsis E2FB transcription factor in regulating auxin-dependent cell division.
Magyar Z, De Veylder L, Atanassova A, Bako L, Inze D, Bogre L., Plant Cell 17(9), 2005
PMID: 16055635
Genome-wide analysis of core cell cycle genes in Arabidopsis.
Vandepoele K, Raes J, De Veylder L, Rouze P, Rombauts S, Inze D., Plant Cell 14(4), 2002
PMID: 11971144
BRX mediates feedback between brassinosteroid levels and auxin signalling in root growth.
Mouchel CF, Osmont KS, Hardtke CS., Nature 443(7110), 2006
PMID: 17006513
FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering.
Michaels SD, Amasino RM., Plant Cell 11(5), 1999
PMID: 10330478
PAF1-complex-mediated histone methylation of FLOWERING LOCUS C chromatin is required for the vernalization-responsive, winter-annual habit in Arabidopsis.
He Y, Doyle MR, Amasino RM., Genes Dev. 18(22), 2004
PMID: 15520273
AtMBD9: a protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis.
Peng M, Cui Y, Bi YM, Rothstein SJ., Plant J. 46(2), 2006
PMID: 16623890
MicroRNA biogenesis and function in plants.
Chen X., FEBS Lett. 579(26), 2005
PMID: 16144699
MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region.
Mallory AC, Reinhart BJ, Jones-Rhoades MW, Tang G, Zamore PD, Barton MK, Bartel DP., EMBO J. 23(16), 2004
PMID: 15282547
Target mimicry provides a new mechanism for regulation of microRNA activity.
Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, Rubio-Somoza I, Leyva A, Weigel D, Garcia JA, Paz-Ares J., Nat. Genet. 39(8), 2007
PMID: 17643101
Widespread translational inhibition by plant miRNAs and siRNAs.
Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, Sieburth L, Voinnet O., Science 320(5880), 2008
PMID: 18483398
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome.
Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ., Curr. Biol. 18(10), 2008
PMID: 18472421
Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradation.
Jiao Y, Riechmann JL, Meyerowitz EM., Plant Cell 20(10), 2008
PMID: 18952771
A link between RNA metabolism and silencing affecting Arabidopsis development.
Gregory BD, O'Malley RC, Lister R, Urich MA, Tonti-Filippini J, Chen H, Millar AH, Ecker JR., Dev. Cell 14(6), 2008
PMID: 18486559
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 19417064
PubMed | Europe PMC

Suchen in

Google Scholar