59 Publikationen

Alle markieren

[59]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943037 OA
Sielemann K, Weisshaar B, Pucker B (2021)
Reference-based QUantification Of gene Dispensability (QUOD).
Plant Methods 17(1): 18.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[58]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952434
Pucker B, Kleinbölting N, Weisshaar B (2021)
Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis.
BMC Genomics 22: 599.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
 
[57]
2021 | Datenpublikation | PUB-ID: 2956654 OA
Schilbert H, Kleinbölting N, Weisshaar B, Pucker B (2021)
Arabidopsis thaliana methylation pattern analysis based on ONT sequence reads.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[56]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955954 OA
Pucker B, Singh HB, Kumari M, Khan MI, Brockington SF (2021)
The report of anthocyanins in the betalain-pigmented genus Hylocereus is not well evidenced and is not a strong basis to refute the mutual exclusion paradigm.
BMC Plant Biology 21(1): 297.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[55]
2021 | Datenpublikation | PUB-ID: 2956788 OA
Pucker B, Brockington S (2021)
Pitaya transcriptome assemblies and investigation of transcript abundances II.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[54]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955558
Montero H, Lee T, Pucker B, Ferreras-Garrucho G, Oldroyd G, Brockington SF, Miyao A, Paszkowski U (2021)
A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage.
Proceedings of the National Academy of Sciences 118(25): e2105281118.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[53]
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2952659
Naik J, Rajput R, Pucker B, Stracke R, Pandey A (2021)
The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula.
Plant Molecular Biology 106(1-2): 157-172.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[52]
2020 | Datenpublikation | PUB-ID: 2946079 OA
Sielemann K, Weisshaar B, Pucker B (2020)
Reference-based QUantification Of gene Dispensability (QUOD) - test dataset.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[51]
2020 | Datenpublikation | PUB-ID: 2946374 OA
Pucker B, Brockington S (2020)
Pitaya transcriptome assemblies and investigation of transcript abundances.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[50]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946440 OA
Pucker B, Pandey A, Weisshaar B, Stracke R (2020)
The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns.
PLoS One 15(10): e0239275.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
 
[49]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948720 OA
Pucker B, Schwandner A, Becker S, Hausmann L, Viehöver P, Töpfer R, Weisshaar B, Holtgräwe D (2020)
RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile.
Plants 9(11): 1548.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
 
[48]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946066 OA
Sielemann K, Hafner A, Pucker B (2020)
The reuse of public datasets in the life sciences: potential risks and rewards.
PeerJ 8: e9954.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[47]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655 OA
Holtgräwe D, Rosleff Soerensen T, Hausmann L, Pucker B, Viehöver P, Töpfer R, Weisshaar B (2020)
A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping.
Frontiers in Plant Science 11: 156.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
 
[46]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669 OA
Siadjeu C, Pucker B, Viehöver P, Albach DC, Weisshaar B (2020)
High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing.
Genes 11(3): 274.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
 
[45]
2020 | Datenpublikation | PUB-ID: 2941469 OA
Pucker B, Siadjeu C, Viehöver P, Albach D, Weisshaar B (2020)
Dioscorea dumetorum genome sequence v1.0.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[44]
2020 | Datenpublikation | PUB-ID: 2942069 OA
Schilbert H, Rempel A, Pucker B (2020)
Gold standard of Nd1 vs TAIR10 sequence variants.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[43]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341 OA
Schilbert H, Rempel A, Pucker B (2020)
Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data.
Plants 9(4): 439.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[42]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938807
Busche M, Pucker B, Viehöver P, Weisshaar B, Stracke R (2020)
Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2.
G3: Genes|Genomes|Genetics 10(1): 37-42.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
 
[41]
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2946565
Xu B, Taylor L, Pucker B, Feng T, Glover BJ, Brockington SF (2020)
The land plant‐specific MIXTA‐MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of land.
New Phytologist: nph.16997.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[40]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944597 OA
Pucker B, Reiher F, Schilbert H (2020)
Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tiglium.
Plants 9(9): 1103.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[39]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943062
Choi J, Lee T, Cho J, Servante EK, Pucker B, Summers W, Bowden S, Rahimi M, An K, An G, Bouwmeester HJ, Wallington EJ, Oldroyd G, Paszkowski U (2020)
The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice.
Nature Communications 11(1): 2114.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[38]
2020 | Preprint | Veröffentlicht | PUB-ID: 2945592 OA
Pellegrinelli V, Rodriguez-Cuenca S, Rouault C, Schilbert H, Virtue S, Moreno-Navarrete JM, Bidault G, Borrego M del CV, Dias AR, Pucker B, Dale M, Campbell M, Carobbio S, Aron-Wisnewsky J, Mora S, Masiero M, Emmanouilidou A, Mukhopadhyay S, Dougan G, Hoed M den, Loos R, Fernández-Real JM, Chiarugi D, Clément K, Vidal-Puig A (2020)
Dysregulation of macrophage PEPD in obesity determines adipose tissue fibro-inflammation and insulin resistance.
Research square.
PUB | PDF | DOI | Download (ext.)
 
[37]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935311 OA
Frey K, Pucker B (2020)
Animal, fungi, and plant genome sequences harbour different non-canonical splice sites.
Cells 9(2): 458.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[36]
2020 | Datenpublikation | PUB-ID: 2941041 OA
Pucker B, Feng T, Brockington S (2020)
Next generation sequencing to investigate genomic diversity in Caryophyllales - Kewa caespitosa.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[35]
2020 | Datenpublikation | PUB-ID: 2941045 OA
Pucker B, Feng T, Brockington S (2020)
Next generation sequencing to investigate genomic diversity in Caryophyllales - Pharnaceum exiguum.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[34]
2020 | Datenpublikation | PUB-ID: 2941043 OA
Pucker B, Feng T, Brockington S (2020)
Next generation sequencing to investigate genomic diversity in Caryophyllales - Macarthuria australis.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[33]
2020 | Datenpublikation | PUB-ID: 2941047 OA
Pucker B (2020)
Arabidopsis thaliana Nd-1 Illumina short reads.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[32]
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938013 OA
Pucker B, Schilbert H (2019)
Genomics and Transcriptomics Advance in Plant Sciences.
In: Molecular Approaches in Plant Biology and Environmental Challenges. Singh SP, Upadhyay SK, Pandey A, Kumar S (Eds); Energy, Environment, and Sustainability, Singapore: Springer: 419-448.
PUB | PDF | DOI
 
[31]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936783
Sheehan H, Feng T, Walker‐Hale N, Lopez‐Nieves S, Pucker B, Guo R, Yim WC, Badgami R, Timoneda A, Zhao L, Tiley H, Copetti D, Sanderson MJ, Cushman JC, Moore MJ, Smith SA, Brockington SF (2019)
Evolution of L‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales .
New Phytologist 227(3): 914-929.
PUB | DOI | WoS | PubMed | Europe PMC
 
[30]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698 OA
Pucker B, Holtgräwe D, Stadermann KB, Frey K, Huettel B, Reinhardt R, Weisshaar B (2019)
Chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set.
PLoS One 14(5): e0216233.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | GenBank
 
[29]
2019 | Bielefelder E-Dissertation | PUB-ID: 2935794 OA
Pucker B (2019)
De novo Nd-1 genome assembly reveals genomic diversity of Arabidopsis thaliana and facilitates genome-wide non-canonical splice site analysis across plant species.
Bielefeld: Universität Bielefeld.
PUB | PDF | DOI
 
[28]
2019 | Datenpublikation | PUB-ID: 2949309
Pucker B, Holtgräwe D, Stadermann KB, Weisshaar B (2019)
Chromosome-level Assembly Reveals the Niederzenz (Nd-1) Genome Structure and Gene Set.
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben.
PUB | Dateien verfügbar | DOI
 
[27]
2019 | Datenpublikation | PUB-ID: 2938178 OA
Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)
Homozygous SNVs between BoeWGS1.0 and PN40024.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[26]
2019 | Datenpublikation | PUB-ID: 2938180 OA
Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)
Heterozygous SNVs between BoeWGS1.0 and PN40024.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[25]
2019 | Datenpublikation | PUB-ID: 2938185 OA
Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)
Description and mapping positions of BoeWGS1.0 contigs.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[24]
2019 | Datenpublikation | PUB-ID: 2934220 OA
Pucker B, Frey K (2019)
RNA-Seq read coverage depth of splice sites in fungi.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[23]
2019 | Datenpublikation | PUB-ID: 2934226 OA
Pucker B, Frey K (2019)
RNA-Seq read coverage depth of splice sites in animals.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[22]
2019 | Datenpublikation | PUB-ID: 2936278 OA
Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)
Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[21]
2019 | Datenpublikation | PUB-ID: 2937972 OA
Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)
Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[20]
2019 | Datenpublikation | PUB-ID: 2937697 OA
Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)
Genome assemblies of Musa acuminata Dwarf Cavendish.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[19]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935844 OA
Pucker B, Schilbert H, Schumacher SF (2019)
Integrating Molecular Biology and Bioinformatics Education.
Journal of Integrative Bioinformatics 16(3): 20190005.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[18]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135 OA
Pucker B, Rückert C, Stracke R, Viehöver P, Kalinowski J, Weisshaar B (2019)
Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome.
Genes 10(9): 671.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
 
[17]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079
Timoneda A, Feng T, Sheehan H, Walker‐Hale N, Pucker B, Lopez‐Nieves S, Guo R, Brockington S (2019)
The evolution of betalain biosynthesis in Caryophyllales.
New Phytologist 224(1): 71-85.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[16]
2019 | Preprint | Veröffentlicht | PUB-ID: 2935737 OA
Pucker B, Feng T, Brockington SF (2019)
Next generation sequencing to investigate genomic diversity in Caryophyllales.
bioRxiv.
PUB | PDF | Download (ext.) | Preprint
 
[15]
2019 | Preprint | Veröffentlicht | PUB-ID: 2934975 OA
Pucker B (2019)
Mapping-based genome size estimation.
bioRxiv.
PUB | PDF | Download (ext.) | Preprint
 
[14]
2019 | Preprint | Veröffentlicht | PUB-ID: 2934778 OA
Baasner J-S, Howard D, Pucker B (2019)
Influence of neighboring small sequence variants on functional impact prediction.
bioRxiv.
PUB | PDF | Download (ext.) | Preprint
 
[13]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931064 OA
Brinkrolf C, Henke NA, Ochel L, Pucker B, Kruse O, Lutter P (2018)
Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA.
Journal of Integrative Bioinformatics 15(3): 20180018.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[12]
2018 | Datenpublikation | PUB-ID: 2931315 OA
Pucker B (2018)
RNA-Seq read coverage depth of splice sites in plants.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[11]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870 OA
Pucker B, Brockington SF (2018)
Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes.
BMC Genomics 19(1): 980.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[10]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296 OA
Whitford CM, Dymek S, Kerkhoff D, März C, Schmidt O, Edich M, Droste J, Pucker B, Rückert C, Kalinowski J (2018)
Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications.
Journal of Biological Engineering 12(1): 13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[9]
2018 | Diskussionspapier | Veröffentlicht | PUB-ID: 2920633 OA
Friedrich A, Pucker B (2018)
Peer-review as a teaching method. Working Paper der AG Forschendes Lernen in der dghd; 2, 2018.
Carl von Ossietzky Universität Oldenburg.
PUB | PDF | Download (ext.)
 
[8]
2018 | Preprint | Veröffentlicht | PUB-ID: 2931225
Schilbert H, Pellegrinelli V, Rodriguez-Cuenca S, Vidal-Puig A, Pucker B (2018)
Harnessing natural diversity to identify key amino acid residues in prolidase.
bioRxiv.
PUB | Download (ext.) | Preprint
 
[7]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026 OA
Haak M, Vinke S, Keller W, Droste J, Rückert C, Kalinowski J, Pucker B (2018)
High Quality de Novo Transcriptome Assembly of Croton tiglium.
Frontiers in Molecular Biosciences 5: 62.
PUB | PDF | DOI | Download (ext.)
 
[6]
2017 | Datenpublikation | PUB-ID: 2930821 OA
Karsten L, Bergen D, Drake C, Dymek S, Edich M, Haak M, Kerkhoff D, Kerkhoff Y, Liebers M, März C, Schlüter L, Schmidt O, Vinke S, M. Whitford C, Pucker B, Droste J, Rückert C, Müller K, Kalinowski J (2017)
Expanding The Genetic Code.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[5]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524 OA
Pucker B, Holtgräwe D, Weisshaar B (2017)
Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence.
BMC Research Notes 10(1): 667.
PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
 
[4]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462
Alkhateeb R, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter F-J (2017)
Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.
Journal of Biotechnology 253: 55-61.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905844 OA
Pucker B, Holtgräwe D, Rosleff Sörensen T, Stracke R, Viehöver P, Weisshaar B (2016)
A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny.
PLoS One 11(10): e0164321.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
 
[2]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778 OA
Stracke R, Holtgräwe D, Schneider J, Pucker B, Rosleff Sörensen T, Weisshaar B (2014)
Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ).
BMC Plant Biology 14(1): 249.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[1]
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2905012 OA
Fust A, Hollmann B, Pucker B, Wollborn D, Tiemann J, Droste J, Brosda S, Blunk S, Riedl S, Bleckwehl T (2014)
The Transformers. From Carbon Dioxide to Biofuel.
Presented at the International Genetically Engineered Machine Competition (IGEM) 2014, Boston, Mass., USA.
PUB | PDF | DOI
 

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59 Publikationen

Alle markieren

[59]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943037 OA
Sielemann K, Weisshaar B, Pucker B (2021)
Reference-based QUantification Of gene Dispensability (QUOD).
Plant Methods 17(1): 18.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[58]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952434
Pucker B, Kleinbölting N, Weisshaar B (2021)
Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis.
BMC Genomics 22: 599.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
 
[57]
2021 | Datenpublikation | PUB-ID: 2956654 OA
Schilbert H, Kleinbölting N, Weisshaar B, Pucker B (2021)
Arabidopsis thaliana methylation pattern analysis based on ONT sequence reads.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[56]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955954 OA
Pucker B, Singh HB, Kumari M, Khan MI, Brockington SF (2021)
The report of anthocyanins in the betalain-pigmented genus Hylocereus is not well evidenced and is not a strong basis to refute the mutual exclusion paradigm.
BMC Plant Biology 21(1): 297.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[55]
2021 | Datenpublikation | PUB-ID: 2956788 OA
Pucker B, Brockington S (2021)
Pitaya transcriptome assemblies and investigation of transcript abundances II.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[54]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955558
Montero H, Lee T, Pucker B, Ferreras-Garrucho G, Oldroyd G, Brockington SF, Miyao A, Paszkowski U (2021)
A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage.
Proceedings of the National Academy of Sciences 118(25): e2105281118.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[53]
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2952659
Naik J, Rajput R, Pucker B, Stracke R, Pandey A (2021)
The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula.
Plant Molecular Biology 106(1-2): 157-172.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[52]
2020 | Datenpublikation | PUB-ID: 2946079 OA
Sielemann K, Weisshaar B, Pucker B (2020)
Reference-based QUantification Of gene Dispensability (QUOD) - test dataset.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[51]
2020 | Datenpublikation | PUB-ID: 2946374 OA
Pucker B, Brockington S (2020)
Pitaya transcriptome assemblies and investigation of transcript abundances.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[50]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946440 OA
Pucker B, Pandey A, Weisshaar B, Stracke R (2020)
The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns.
PLoS One 15(10): e0239275.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
 
[49]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948720 OA
Pucker B, Schwandner A, Becker S, Hausmann L, Viehöver P, Töpfer R, Weisshaar B, Holtgräwe D (2020)
RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile.
Plants 9(11): 1548.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
 
[48]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946066 OA
Sielemann K, Hafner A, Pucker B (2020)
The reuse of public datasets in the life sciences: potential risks and rewards.
PeerJ 8: e9954.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[47]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655 OA
Holtgräwe D, Rosleff Soerensen T, Hausmann L, Pucker B, Viehöver P, Töpfer R, Weisshaar B (2020)
A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping.
Frontiers in Plant Science 11: 156.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
 
[46]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669 OA
Siadjeu C, Pucker B, Viehöver P, Albach DC, Weisshaar B (2020)
High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing.
Genes 11(3): 274.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
 
[45]
2020 | Datenpublikation | PUB-ID: 2941469 OA
Pucker B, Siadjeu C, Viehöver P, Albach D, Weisshaar B (2020)
Dioscorea dumetorum genome sequence v1.0.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[44]
2020 | Datenpublikation | PUB-ID: 2942069 OA
Schilbert H, Rempel A, Pucker B (2020)
Gold standard of Nd1 vs TAIR10 sequence variants.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[43]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341 OA
Schilbert H, Rempel A, Pucker B (2020)
Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data.
Plants 9(4): 439.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[42]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938807
Busche M, Pucker B, Viehöver P, Weisshaar B, Stracke R (2020)
Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2.
G3: Genes|Genomes|Genetics 10(1): 37-42.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
 
[41]
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2946565
Xu B, Taylor L, Pucker B, Feng T, Glover BJ, Brockington SF (2020)
The land plant‐specific MIXTA‐MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of land.
New Phytologist: nph.16997.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[40]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944597 OA
Pucker B, Reiher F, Schilbert H (2020)
Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tiglium.
Plants 9(9): 1103.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[39]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943062
Choi J, Lee T, Cho J, Servante EK, Pucker B, Summers W, Bowden S, Rahimi M, An K, An G, Bouwmeester HJ, Wallington EJ, Oldroyd G, Paszkowski U (2020)
The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice.
Nature Communications 11(1): 2114.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[38]
2020 | Preprint | Veröffentlicht | PUB-ID: 2945592 OA
Pellegrinelli V, Rodriguez-Cuenca S, Rouault C, Schilbert H, Virtue S, Moreno-Navarrete JM, Bidault G, Borrego M del CV, Dias AR, Pucker B, Dale M, Campbell M, Carobbio S, Aron-Wisnewsky J, Mora S, Masiero M, Emmanouilidou A, Mukhopadhyay S, Dougan G, Hoed M den, Loos R, Fernández-Real JM, Chiarugi D, Clément K, Vidal-Puig A (2020)
Dysregulation of macrophage PEPD in obesity determines adipose tissue fibro-inflammation and insulin resistance.
Research square.
PUB | PDF | DOI | Download (ext.)
 
[37]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935311 OA
Frey K, Pucker B (2020)
Animal, fungi, and plant genome sequences harbour different non-canonical splice sites.
Cells 9(2): 458.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[36]
2020 | Datenpublikation | PUB-ID: 2941041 OA
Pucker B, Feng T, Brockington S (2020)
Next generation sequencing to investigate genomic diversity in Caryophyllales - Kewa caespitosa.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[35]
2020 | Datenpublikation | PUB-ID: 2941045 OA
Pucker B, Feng T, Brockington S (2020)
Next generation sequencing to investigate genomic diversity in Caryophyllales - Pharnaceum exiguum.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[34]
2020 | Datenpublikation | PUB-ID: 2941043 OA
Pucker B, Feng T, Brockington S (2020)
Next generation sequencing to investigate genomic diversity in Caryophyllales - Macarthuria australis.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[33]
2020 | Datenpublikation | PUB-ID: 2941047 OA
Pucker B (2020)
Arabidopsis thaliana Nd-1 Illumina short reads.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[32]
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938013 OA
Pucker B, Schilbert H (2019)
Genomics and Transcriptomics Advance in Plant Sciences.
In: Molecular Approaches in Plant Biology and Environmental Challenges. Singh SP, Upadhyay SK, Pandey A, Kumar S (Eds); Energy, Environment, and Sustainability, Singapore: Springer: 419-448.
PUB | PDF | DOI
 
[31]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936783
Sheehan H, Feng T, Walker‐Hale N, Lopez‐Nieves S, Pucker B, Guo R, Yim WC, Badgami R, Timoneda A, Zhao L, Tiley H, Copetti D, Sanderson MJ, Cushman JC, Moore MJ, Smith SA, Brockington SF (2019)
Evolution of L‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales .
New Phytologist 227(3): 914-929.
PUB | DOI | WoS | PubMed | Europe PMC
 
[30]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698 OA
Pucker B, Holtgräwe D, Stadermann KB, Frey K, Huettel B, Reinhardt R, Weisshaar B (2019)
Chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set.
PLoS One 14(5): e0216233.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | GenBank
 
[29]
2019 | Bielefelder E-Dissertation | PUB-ID: 2935794 OA
Pucker B (2019)
De novo Nd-1 genome assembly reveals genomic diversity of Arabidopsis thaliana and facilitates genome-wide non-canonical splice site analysis across plant species.
Bielefeld: Universität Bielefeld.
PUB | PDF | DOI
 
[28]
2019 | Datenpublikation | PUB-ID: 2949309
Pucker B, Holtgräwe D, Stadermann KB, Weisshaar B (2019)
Chromosome-level Assembly Reveals the Niederzenz (Nd-1) Genome Structure and Gene Set.
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben.
PUB | Dateien verfügbar | DOI
 
[27]
2019 | Datenpublikation | PUB-ID: 2938178 OA
Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)
Homozygous SNVs between BoeWGS1.0 and PN40024.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[26]
2019 | Datenpublikation | PUB-ID: 2938180 OA
Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)
Heterozygous SNVs between BoeWGS1.0 and PN40024.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[25]
2019 | Datenpublikation | PUB-ID: 2938185 OA
Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)
Description and mapping positions of BoeWGS1.0 contigs.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[24]
2019 | Datenpublikation | PUB-ID: 2934220 OA
Pucker B, Frey K (2019)
RNA-Seq read coverage depth of splice sites in fungi.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[23]
2019 | Datenpublikation | PUB-ID: 2934226 OA
Pucker B, Frey K (2019)
RNA-Seq read coverage depth of splice sites in animals.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[22]
2019 | Datenpublikation | PUB-ID: 2936278 OA
Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)
Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[21]
2019 | Datenpublikation | PUB-ID: 2937972 OA
Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)
Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[20]
2019 | Datenpublikation | PUB-ID: 2937697 OA
Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)
Genome assemblies of Musa acuminata Dwarf Cavendish.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[19]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935844 OA
Pucker B, Schilbert H, Schumacher SF (2019)
Integrating Molecular Biology and Bioinformatics Education.
Journal of Integrative Bioinformatics 16(3): 20190005.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[18]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135 OA
Pucker B, Rückert C, Stracke R, Viehöver P, Kalinowski J, Weisshaar B (2019)
Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome.
Genes 10(9): 671.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
 
[17]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079
Timoneda A, Feng T, Sheehan H, Walker‐Hale N, Pucker B, Lopez‐Nieves S, Guo R, Brockington S (2019)
The evolution of betalain biosynthesis in Caryophyllales.
New Phytologist 224(1): 71-85.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[16]
2019 | Preprint | Veröffentlicht | PUB-ID: 2935737 OA
Pucker B, Feng T, Brockington SF (2019)
Next generation sequencing to investigate genomic diversity in Caryophyllales.
bioRxiv.
PUB | PDF | Download (ext.) | Preprint
 
[15]
2019 | Preprint | Veröffentlicht | PUB-ID: 2934975 OA
Pucker B (2019)
Mapping-based genome size estimation.
bioRxiv.
PUB | PDF | Download (ext.) | Preprint
 
[14]
2019 | Preprint | Veröffentlicht | PUB-ID: 2934778 OA
Baasner J-S, Howard D, Pucker B (2019)
Influence of neighboring small sequence variants on functional impact prediction.
bioRxiv.
PUB | PDF | Download (ext.) | Preprint
 
[13]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931064 OA
Brinkrolf C, Henke NA, Ochel L, Pucker B, Kruse O, Lutter P (2018)
Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA.
Journal of Integrative Bioinformatics 15(3): 20180018.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[12]
2018 | Datenpublikation | PUB-ID: 2931315 OA
Pucker B (2018)
RNA-Seq read coverage depth of splice sites in plants.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[11]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870 OA
Pucker B, Brockington SF (2018)
Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes.
BMC Genomics 19(1): 980.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
 
[10]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296 OA
Whitford CM, Dymek S, Kerkhoff D, März C, Schmidt O, Edich M, Droste J, Pucker B, Rückert C, Kalinowski J (2018)
Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications.
Journal of Biological Engineering 12(1): 13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[9]
2018 | Diskussionspapier | Veröffentlicht | PUB-ID: 2920633 OA
Friedrich A, Pucker B (2018)
Peer-review as a teaching method. Working Paper der AG Forschendes Lernen in der dghd; 2, 2018.
Carl von Ossietzky Universität Oldenburg.
PUB | PDF | Download (ext.)
 
[8]
2018 | Preprint | Veröffentlicht | PUB-ID: 2931225
Schilbert H, Pellegrinelli V, Rodriguez-Cuenca S, Vidal-Puig A, Pucker B (2018)
Harnessing natural diversity to identify key amino acid residues in prolidase.
bioRxiv.
PUB | Download (ext.) | Preprint
 
[7]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026 OA
Haak M, Vinke S, Keller W, Droste J, Rückert C, Kalinowski J, Pucker B (2018)
High Quality de Novo Transcriptome Assembly of Croton tiglium.
Frontiers in Molecular Biosciences 5: 62.
PUB | PDF | DOI | Download (ext.)
 
[6]
2017 | Datenpublikation | PUB-ID: 2930821 OA
Karsten L, Bergen D, Drake C, Dymek S, Edich M, Haak M, Kerkhoff D, Kerkhoff Y, Liebers M, März C, Schlüter L, Schmidt O, Vinke S, M. Whitford C, Pucker B, Droste J, Rückert C, Müller K, Kalinowski J (2017)
Expanding The Genetic Code.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[5]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524 OA
Pucker B, Holtgräwe D, Weisshaar B (2017)
Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence.
BMC Research Notes 10(1): 667.
PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
 
[4]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462
Alkhateeb R, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter F-J (2017)
Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.
Journal of Biotechnology 253: 55-61.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905844 OA
Pucker B, Holtgräwe D, Rosleff Sörensen T, Stracke R, Viehöver P, Weisshaar B (2016)
A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny.
PLoS One 11(10): e0164321.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
 
[2]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778 OA
Stracke R, Holtgräwe D, Schneider J, Pucker B, Rosleff Sörensen T, Weisshaar B (2014)
Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ).
BMC Plant Biology 14(1): 249.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[1]
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2905012 OA
Fust A, Hollmann B, Pucker B, Wollborn D, Tiemann J, Droste J, Brosda S, Blunk S, Riedl S, Bleckwehl T (2014)
The Transformers. From Carbon Dioxide to Biofuel.
Presented at the International Genetically Engineered Machine Competition (IGEM) 2014, Boston, Mass., USA.
PUB | PDF | DOI
 

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