62 Publikationen
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2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2981194Feng T, Pucker B, Kuang T, Song B, Yang Y, Lin N, Zhang H, Moore MJ, Brockington SF, Wang Q, Deng T, Wang H, Sun H (2023)PUB | DOI | WoS | PubMed | Europe PMC | CNGBdb Project
The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine adaptation.
Communications Biology 6(1): 706. -
2022 | Datenpublikation | PUB-ID: 2963492Pucker B, Schilbert H, Viehöver P, Weisshaar B, Holtgräwe D (2022)PUB | Dateien verfügbar | DOI
Supplementary material related to MBS analysis of seed quality parameters in Brassica napus.
Bielefeld University. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965468Rajput R, Tyagi S, Naik J, Pucker B, Stracke R, Pandey A (2022)PUB | DOI | WoS | PubMed | Europe PMC
The R2R3-MYB gene family in Cicer arietinum: genome-wide identification and expression analysis leads to functional characterization of proanthocyanidin biosynthesis regulators in the seed coat.
Planta 256(4): 67. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945592Pellegrinelli V, Rodriguez-Cuenca S, Rouault C, Schilbert H, Virtue S, Moreno-Navarrete JM, Bidault G, Borrego M del CV, Dias AR, Pucker B, Dale M, Campbell M, Carobbio S, Aron-Wisnewsky J, Mora S, Masiero M, Emmanouilidou A, Mukhopadhyay S, Dougan G, Hoed M den, Loos R, Fernández-Real JM, Chiarugi D, Clément K, Vidal-Puig A (2022)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Dysregulation of macrophage PEPD in obesity determines adipose tissue fibro-inflammation and insulin resistance.
Nature Metabolism 4(4): 476-494. -
2021 | Datenpublikation | PUB-ID: 2956654Schilbert H, Kleinbölting N, Weisshaar B, Pucker B (2021)PUB | Dateien verfügbar | DOI
Arabidopsis thaliana methylation pattern analysis based on ONT sequence reads.
Bielefeld University. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952434Pucker B, Kleinbölting N, Weisshaar B (2021)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis.
BMC Genomics 22: 599. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943037Sielemann K, Weisshaar B, Pucker B (2021)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Reference-based QUantification Of gene Dispensability (QUOD).
Plant Methods 17(1): 18. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2952659Naik J, Rajput R, Pucker B, Stracke R, Pandey A (2021)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula.
Plant Molecular Biology 106(1-2): 157-172. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955954Pucker B, Singh HB, Kumari M, Khan MI, Brockington SF (2021)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
The report of anthocyanins in the betalain-pigmented genus Hylocereus is not well evidenced and is not a strong basis to refute the mutual exclusion paradigm.
BMC Plant Biology 21(1): 297. -
2021 | Datenpublikation | PUB-ID: 2956788Pucker B, Brockington S (2021)PUB | Dateien verfügbar | DOI
Pitaya transcriptome assemblies and investigation of transcript abundances II.
Bielefeld University. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955558Montero H, Lee T, Pucker B, Ferreras-Garrucho G, Oldroyd G, Brockington SF, Miyao A, Paszkowski U (2021)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage.
Proceedings of the National Academy of Sciences 118(25): e2105281118. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948720Pucker B, Schwandner A, Becker S, Hausmann L, Viehöver P, Töpfer R, Weisshaar B, Holtgräwe D (2020)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile.
Plants 9(11): 1548. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938807Busche M, Pucker B, Viehöver P, Weisshaar B, Stracke R (2020)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2.
G3: Genes|Genomes|Genetics 10(1): 37-42. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944597Pucker B, Reiher F, Schilbert H (2020)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tiglium.
Plants 9(9): 1103. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341Schilbert H, Rempel A, Pucker B (2020)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data.
Plants 9(4): 439. -
2020 | Datenpublikation | PUB-ID: 2942069Schilbert H, Rempel A, Pucker B (2020)PUB | Dateien verfügbar | DOI
Gold standard of Nd1 vs TAIR10 sequence variants.
Bielefeld University. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655Holtgräwe D, Rosleff Soerensen T, Hausmann L, Pucker B, Viehöver P, Töpfer R, Weisshaar B (2020)PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping.
Frontiers in Plant Science 11: 156. -
2020 | Datenpublikation | PUB-ID: 2946079Sielemann K, Weisshaar B, Pucker B (2020)PUB | Dateien verfügbar | DOI
Reference-based QUantification Of gene Dispensability (QUOD) - test dataset.
Bielefeld University. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935311Frey K, Pucker B (2020)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Animal, fungi, and plant genome sequences harbour different non-canonical splice sites.
Cells 9(2): 458. -
2020 | Datenpublikation | PUB-ID: 2946374Pucker B, Brockington S (2020)PUB | Dateien verfügbar | DOI
Pitaya transcriptome assemblies and investigation of transcript abundances.
Bielefeld University. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946440Pucker B, Pandey A, Weisshaar B, Stracke R (2020)PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns.
PLoS One 15(10): e0239275. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946066Sielemann K, Hafner A, Pucker B (2020)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
The reuse of public datasets in the life sciences: potential risks and rewards.
PeerJ 8: e9954. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669Siadjeu C, Pucker B, Viehöver P, Albach DC, Weisshaar B (2020)PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing.
Genes 11(3): 274. -
2020 | Datenpublikation | PUB-ID: 2941469Pucker B, Siadjeu C, Viehöver P, Albach D, Weisshaar B (2020)PUB | Dateien verfügbar | DOI
Dioscorea dumetorum genome sequence v1.0.
Bielefeld University. -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2946565Xu B, Taylor L, Pucker B, Feng T, Glover BJ, Brockington SF (2020)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
The land plant‐specific MIXTA‐MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of land.
New Phytologist: nph.16997. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943062Choi J, Lee T, Cho J, Servante EK, Pucker B, Summers W, Bowden S, Rahimi M, An K, An G, Bouwmeester HJ, Wallington EJ, Oldroyd G, Paszkowski U (2020)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice.
Nature Communications 11(1): 2114. -
2020 | Datenpublikation | PUB-ID: 2941041Pucker B, Feng T, Brockington S (2020)PUB | Dateien verfügbar | DOI
Next generation sequencing to investigate genomic diversity in Caryophyllales - Kewa caespitosa.
Bielefeld University. -
2020 | Datenpublikation | PUB-ID: 2941045Pucker B, Feng T, Brockington S (2020)PUB | Dateien verfügbar | DOI
Next generation sequencing to investigate genomic diversity in Caryophyllales - Pharnaceum exiguum.
Bielefeld University. -
2020 | Datenpublikation | PUB-ID: 2941043Pucker B, Feng T, Brockington S (2020)PUB | Dateien verfügbar | DOI
Next generation sequencing to investigate genomic diversity in Caryophyllales - Macarthuria australis.
Bielefeld University. -
2020 | Datenpublikation | PUB-ID: 2941047Pucker B (2020)PUB | Dateien verfügbar | DOI
Arabidopsis thaliana Nd-1 Illumina short reads.
Bielefeld University. -
2019 | Datenpublikation | PUB-ID: 2937697Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)PUB | Dateien verfügbar | DOI
Genome assemblies of Musa acuminata Dwarf Cavendish.
Bielefeld University. -
2019 | Datenpublikation | PUB-ID: 2937972Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)PUB | Dateien verfügbar | DOI
Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang.
Bielefeld University. -
2019 | Preprint | Veröffentlicht | PUB-ID: 2934778Baasner J-S, Howard D, Pucker B (2019)PUB | PDF | Download (ext.) | Preprint
Influence of neighboring small sequence variants on functional impact prediction.
bioRxiv. -
2019 | Datenpublikation | PUB-ID: 2936278Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)PUB | Dateien verfügbar | DOI
Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang.
Bielefeld University. -
2019 | Datenpublikation | PUB-ID: 2938180Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)PUB | Dateien verfügbar | DOI
Heterozygous SNVs between BoeWGS1.0 and PN40024.
Bielefeld University. -
2019 | Datenpublikation | PUB-ID: 2938178Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)PUB | Dateien verfügbar | DOI
Homozygous SNVs between BoeWGS1.0 and PN40024.
Bielefeld University. -
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938013Pucker B, Schilbert H (2019)PUB | PDF | DOI
Genomics and Transcriptomics Advance in Plant Sciences.
In: Molecular Approaches in Plant Biology and Environmental Challenges. Singh SP, Upadhyay SK, Pandey A, Kumar S (Eds); Energy, Environment, and Sustainability, Singapore: Springer: 419-448. -
2019 | Datenpublikation | PUB-ID: 2938185Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)PUB | Dateien verfügbar | DOI
Description and mapping positions of BoeWGS1.0 contigs.
Bielefeld University. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936783Sheehan H, Feng T, Walker‐Hale N, Lopez‐Nieves S, Pucker B, Guo R, Yim WC, Badgami R, Timoneda A, Zhao L, Tiley H, Copetti D, Sanderson MJ, Cushman JC, Moore MJ, Smith SA, Brockington SF (2019)PUB | DOI | WoS | PubMed | Europe PMC
Evolution of L‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales .
New Phytologist 227(3): 914-929. -
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698Pucker B, Holtgräwe D, Stadermann KB, Frey K, Huettel B, Reinhardt R, Weisshaar B (2019)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | GenBank
Chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set.
PLoS One 14(5): e0216233. -
2019 | Datenpublikation | PUB-ID: 2949309Pucker B, Holtgräwe D, Stadermann KB, Weisshaar B (2019)PUB | Dateien verfügbar | DOI
Chromosome-level Assembly Reveals the Niederzenz (Nd-1) Genome Structure and Gene Set.
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben. -
2019 | Datenpublikation | PUB-ID: 2934220Pucker B, Frey K (2019)PUB | Dateien verfügbar | DOI
RNA-Seq read coverage depth of splice sites in fungi.
Bielefeld University. -
2019 | Datenpublikation | PUB-ID: 2934226Pucker B, Frey K (2019)PUB | Dateien verfügbar | DOI
RNA-Seq read coverage depth of splice sites in animals.
Bielefeld University. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935844Pucker B, Schilbert H, Schumacher SF (2019)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Integrating Molecular Biology and Bioinformatics Education.
Journal of Integrative Bioinformatics 16(3): 20190005. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135Pucker B, Rückert C, Stracke R, Viehöver P, Kalinowski J, Weisshaar B (2019)PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome.
Genes 10(9): 671. -
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079Timoneda A, Feng T, Sheehan H, Walker‐Hale N, Pucker B, Lopez‐Nieves S, Guo R, Brockington S (2019)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
The evolution of betalain biosynthesis in Caryophyllales.
New Phytologist 224(1): 71-85. -
2019 | Preprint | Veröffentlicht | PUB-ID: 2935737Pucker B, Feng T, Brockington SF (2019)PUB | PDF | Download (ext.) | Preprint
Next generation sequencing to investigate genomic diversity in Caryophyllales.
bioRxiv. -
2019 | Preprint | Veröffentlicht | PUB-ID: 2934975Pucker B (2019)PUB | PDF | Download (ext.) | Preprint
Mapping-based genome size estimation.
bioRxiv. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296Whitford CM, Dymek S, Kerkhoff D, März C, Schmidt O, Edich M, Droste J, Pucker B, Rückert C, Kalinowski J (2018)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications.
Journal of Biological Engineering 12(1): 13. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931064Brinkrolf C, Henke NA, Ochel L, Pucker B, Kruse O, Lutter P (2018)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA.
Journal of Integrative Bioinformatics 15(3): 20180018. -
2018 | Datenpublikation | PUB-ID: 2931315Pucker B (2018)PUB | Dateien verfügbar | DOI
RNA-Seq read coverage depth of splice sites in plants.
Bielefeld University. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870Pucker B, Brockington SF (2018)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes.
BMC Genomics 19(1): 980. -
2018 | Diskussionspapier | Veröffentlicht | PUB-ID: 2920633Friedrich A, Pucker B (2018)PUB | PDF | Download (ext.)
Peer-review as a teaching method. Working Paper der AG Forschendes Lernen in der dghd; 2, 2018.
Carl von Ossietzky Universität Oldenburg. -
2018 | Preprint | Veröffentlicht | PUB-ID: 2931225Schilbert H, Pellegrinelli V, Rodriguez-Cuenca S, Vidal-Puig A, Pucker B (2018)PUB | Download (ext.) | Preprint
Harnessing natural diversity to identify key amino acid residues in prolidase.
bioRxiv. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026Haak M, Vinke S, Keller W, Droste J, Rückert C, Kalinowski J, Pucker B (2018)PUB | PDF | DOI | Download (ext.)
High Quality de Novo Transcriptome Assembly of Croton tiglium.
Frontiers in Molecular Biosciences 5: 62. -
2017 | Datenpublikation | PUB-ID: 2930821Karsten L, Bergen D, Drake C, Dymek S, Edich M, Haak M, Kerkhoff D, Kerkhoff Y, Liebers M, März C, Schlüter L, Schmidt O, Vinke S, M. Whitford C, Pucker B, Droste J, Rückert C, Müller K, Kalinowski J (2017)PUB | Dateien verfügbar | DOI
Expanding The Genetic Code.
Bielefeld University. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524Pucker B, Holtgräwe D, Weisshaar B (2017)PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence.
BMC Research Notes 10(1): 667. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462Alkhateeb R, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter F-J (2017)PUB | DOI | WoS | PubMed | Europe PMC
Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.
Journal of Biotechnology 253: 55-61. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905844Pucker B, Holtgräwe D, Rosleff Sörensen T, Stracke R, Viehöver P, Weisshaar B (2016)PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny.
PLoS One 11(10): e0164321. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778Stracke R, Holtgräwe D, Schneider J, Pucker B, Rosleff Sörensen T, Weisshaar B (2014)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ).
BMC Plant Biology 14(1): 249. -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2905012Fust A, Hollmann B, Pucker B, Wollborn D, Tiemann J, Droste J, Brosda S, Blunk S, Riedl S, Bleckwehl T (2014)PUB | PDF | DOI
The Transformers. From Carbon Dioxide to Biofuel.
Presented at the International Genetically Engineered Machine Competition (IGEM) 2014, Boston, Mass., USA.