Pitaya transcriptome assemblies and investigation of transcript abundances

Pucker B, Brockington S (2020)
Bielefeld University.

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Pucker, BoasUniBi ; Brockington, Samuel
Abstract / Bemerkung
#### Pitaya transcriptome assemblies and investigation of transcript abundances The RNA-Seq dataset SRP250877 was re-analysed to check findings reported in the corresponding publication. RNA-Seq reads were trimmed with Trimmomatic ([Bolger et al., 2014](https://dx.doi.org/10.1093%2Fbioinformatics%2Fbtu170)) and assembled with Trinity ([Grabher et al., 2011](https://dx.doi.org/10.1038%2Fnbt.1883)). Encoded peptide sequences were predicted and functionally annotated using a previously developed approach ([Haak et al., 2018](https://dx.doi.org/10.3389%2Ffmolb.2018.00062)). kallisto ([Bray et al., 2016](https://doi.org/10.1038/nbt.3519)) was applied to estimate the abundance of transcripts based on transcriptome assemblies of three pitaya species and the raw RNA-Seq reads.
Please see our corresponding manuscript for details.
Erscheinungsjahr
2020
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https://pub.uni-bielefeld.de/record/2946374

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Pucker B, Brockington S. Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University; 2020.
Pucker, B., & Brockington, S. (2020). Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University. doi:10.4119/unibi/2946374
Pucker, B., and Brockington, S. (2020). Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University.
Pucker, B., & Brockington, S., 2020. Pitaya transcriptome assemblies and investigation of transcript abundances, Bielefeld University.
B. Pucker and S. Brockington, Pitaya transcriptome assemblies and investigation of transcript abundances, Bielefeld University, 2020.
Pucker, B., Brockington, S.: Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University (2020).
Pucker, Boas, and Brockington, Samuel. Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University, 2020.
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2020-10-06T21:06:12Z
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