Pitaya transcriptome assemblies and investigation of transcript abundances
Pucker B, Brockington S (2020)
Bielefeld University.
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pitaya_transcriptomics.tar.gz
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Pucker, BoasUniBi ;
Brockington, Samuel
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Abstract / Bemerkung
#### Pitaya transcriptome assemblies and investigation of transcript abundances
The RNA-Seq dataset SRP250877 was re-analysed to check findings reported in the corresponding publication. RNA-Seq reads were trimmed with Trimmomatic ([Bolger et al., 2014](https://dx.doi.org/10.1093%2Fbioinformatics%2Fbtu170)) and assembled with Trinity ([Grabher et al., 2011](https://dx.doi.org/10.1038%2Fnbt.1883)). Encoded peptide sequences were predicted and functionally annotated using a previously developed approach ([Haak et al., 2018](https://dx.doi.org/10.3389%2Ffmolb.2018.00062)). kallisto ([Bray et al., 2016](https://doi.org/10.1038/nbt.3519)) was applied to estimate the abundance of transcripts based on transcriptome assemblies of three pitaya species and the raw RNA-Seq reads.
Please see our corresponding manuscript for details.
Please see our corresponding manuscript for details.
Erscheinungsjahr
2020
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https://pub.uni-bielefeld.de/record/2946374
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Pucker B, Brockington S. Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University; 2020.
Pucker, B., & Brockington, S. (2020). Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University. https://doi.org/10.4119/unibi/2946374
Pucker, Boas, and Brockington, Samuel. 2020. Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University.
Pucker, B., and Brockington, S. (2020). Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University.
Pucker, B., & Brockington, S., 2020. Pitaya transcriptome assemblies and investigation of transcript abundances, Bielefeld University.
B. Pucker and S. Brockington, Pitaya transcriptome assemblies and investigation of transcript abundances, Bielefeld University, 2020.
Pucker, B., Brockington, S.: Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University (2020).
Pucker, Boas, and Brockington, Samuel. Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University, 2020.
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