62 Publikationen
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2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2981194T. Feng, B. Pucker, T. Kuang, B. Song, Y. Yang, N. Lin, H. Zhang, M. J. Moore, S. F. Brockington, Q. Wang, et al., “The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine adaptation”, Communications Biology , 2023, 6, : 706.PUB | DOI | WoS | PubMed | Europe PMC | CNGBdb Project
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965468R. Rajput, S. Tyagi, J. Naik, B. Pucker, R. Stracke, and A. Pandey, “The R2R3-MYB gene family in Cicer arietinum: genome-wide identification and expression analysis leads to functional characterization of proanthocyanidin biosynthesis regulators in the seed coat”, Planta, 2022, 256, : 67.PUB | DOI | WoS | PubMed | Europe PMC
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2022 | Datenpublikation | PUB-ID: 2963492B. Pucker, H. Schilbert, P. Viehöver, B. Weisshaar, and D. Holtgräwe, Supplementary material related to MBS analysis of seed quality parameters in Brassica napus, Bielefeld University, 2022.PUB | Dateien verfügbar | DOI
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945592V. Pellegrinelli, S. Rodriguez-Cuenca, C. Rouault, H. Schilbert, S. Virtue, J. M. Moreno-Navarrete, G. Bidault, M. del C. V. Borrego, A. R. Dias, B. Pucker, et al., “Dysregulation of macrophage PEPD in obesity determines adipose tissue fibro-inflammation and insulin resistance”, Nature Metabolism, 2022, 4, 476-494.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2021 | Datenpublikation | PUB-ID: 2956654H. Schilbert, N. Kleinbölting, B. Weisshaar, and B. Pucker, Arabidopsis thaliana methylation pattern analysis based on ONT sequence reads, Bielefeld University, 2021.PUB | Dateien verfügbar | DOI
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952434B. Pucker, N. Kleinbölting, and B. Weisshaar, “Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis”, BMC Genomics, 2021, 22, : 599.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943037K. Sielemann, B. Weisshaar, and B. Pucker, “Reference-based QUantification Of gene Dispensability (QUOD)”, Plant Methods, 2021, 17, : 18.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2952659J. Naik, R. Rajput, B. Pucker, R. Stracke, and A. Pandey, “The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula”, Plant Molecular Biology, 2021, 106, 157-172.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955954B. Pucker, H. B. Singh, M. Kumari, M. I. Khan, and S. F. Brockington, “The report of anthocyanins in the betalain-pigmented genus Hylocereus is not well evidenced and is not a strong basis to refute the mutual exclusion paradigm”, BMC Plant Biology, 2021, 21, : 297.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2021 | Datenpublikation | PUB-ID: 2956788B. Pucker, and S. Brockington, Pitaya transcriptome assemblies and investigation of transcript abundances II, Bielefeld University, 2021.PUB | Dateien verfügbar | DOI
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955558H. Montero, T. Lee, B. Pucker, G. Ferreras-Garrucho, G. Oldroyd, S. F. Brockington, A. Miyao, and U. Paszkowski, “A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage”, Proceedings of the National Academy of Sciences, 2021, 118, : e2105281118.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938807M. Busche, B. Pucker, P. Viehöver, B. Weisshaar, and R. Stracke, “Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2”, G3: Genes|Genomes|Genetics, 2020, 10, 37-42.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655D. Holtgräwe, T. Rosleff Soerensen, L. Hausmann, B. Pucker, P. Viehöver, R. Töpfer, and B. Weisshaar, “A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping”, Frontiers in Plant Science, 2020, 11, : 156.PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
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2020 | Datenpublikation | PUB-ID: 2942069H. Schilbert, A. Rempel, and B. Pucker, Gold standard of Nd1 vs TAIR10 sequence variants, Bielefeld University, 2020.PUB | Dateien verfügbar | DOI
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341H. Schilbert, A. Rempel, and B. Pucker, “Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data”, Plants, 2020, 9, : 439.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2020 | Datenpublikation | PUB-ID: 2946079K. Sielemann, B. Weisshaar, and B. Pucker, Reference-based QUantification Of gene Dispensability (QUOD) - test dataset, Bielefeld University, 2020.PUB | Dateien verfügbar | DOI
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935311K. Frey, and B. Pucker, “Animal, fungi, and plant genome sequences harbour different non-canonical splice sites”, Cells, 2020, 9, : 458.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2020 | Datenpublikation | PUB-ID: 2946374B. Pucker, and S. Brockington, Pitaya transcriptome assemblies and investigation of transcript abundances, Bielefeld University, 2020.PUB | Dateien verfügbar | DOI
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946440B. Pucker, A. Pandey, B. Weisshaar, and R. Stracke, “The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns”, PLoS One, 2020, 15, : e0239275.PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948720B. Pucker, A. Schwandner, S. Becker, L. Hausmann, P. Viehöver, R. Töpfer, B. Weisshaar, and D. Holtgräwe, “RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile”, Plants, 2020, 9, : 1548.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946066K. Sielemann, A. Hafner, and B. Pucker, “The reuse of public datasets in the life sciences: potential risks and rewards”, PeerJ, 2020, 8, : e9954.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669C. Siadjeu, B. Pucker, P. Viehöver, D. C. Albach, and B. Weisshaar, “High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing”, Genes, 2020, 11, : 274.PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
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2020 | Datenpublikation | PUB-ID: 2941469B. Pucker, C. Siadjeu, P. Viehöver, D. Albach, and B. Weisshaar, Dioscorea dumetorum genome sequence v1.0, Bielefeld University, 2020.PUB | Dateien verfügbar | DOI
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2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2946565B. Xu, L. Taylor, B. Pucker, T. Feng, B. J. Glover, and S. F. Brockington, “The land plant‐specific MIXTA‐MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of land”, New Phytologist, 2020, : nph.16997.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944597B. Pucker, F. Reiher, and H. Schilbert, “Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tiglium”, Plants, 2020, 9, 1103.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943062J. Choi, T. Lee, J. Cho, E. K. Servante, B. Pucker, W. Summers, S. Bowden, M. Rahimi, K. An, G. An, et al., “The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice”, Nature Communications, 2020, 11, : 2114.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Datenpublikation | PUB-ID: 2941041B. Pucker, T. Feng, and S. Brockington, Next generation sequencing to investigate genomic diversity in Caryophyllales - Kewa caespitosa, Bielefeld University, 2020.PUB | Dateien verfügbar | DOI
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2020 | Datenpublikation | PUB-ID: 2941045B. Pucker, T. Feng, and S. Brockington, Next generation sequencing to investigate genomic diversity in Caryophyllales - Pharnaceum exiguum, Bielefeld University, 2020.PUB | Dateien verfügbar | DOI
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2020 | Datenpublikation | PUB-ID: 2941043B. Pucker, T. Feng, and S. Brockington, Next generation sequencing to investigate genomic diversity in Caryophyllales - Macarthuria australis, Bielefeld University, 2020.PUB | Dateien verfügbar | DOI
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2020 | Datenpublikation | PUB-ID: 2941047B. Pucker, Arabidopsis thaliana Nd-1 Illumina short reads, Bielefeld University, 2020.PUB | Dateien verfügbar | DOI
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2019 | Preprint | Veröffentlicht | PUB-ID: 2934778J. - S. Baasner, D. Howard, and B. Pucker, “Influence of neighboring small sequence variants on functional impact prediction”, bioRxiv, 2019.PUB | PDF | Download (ext.) | Preprint
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2019 | Datenpublikation | PUB-ID: 2937972B. Pucker, M. Busche, P. Viehöver, B. Weisshaar, and R. Stracke, Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang, Bielefeld University, 2019.PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2936278B. Pucker, M. Busche, P. Viehöver, B. Weisshaar, and R. Stracke, Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang, Bielefeld University, 2019.PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2938180D. Holtgräwe, B. Pucker, T. Rosleff Sörensen, and B. Weisshaar, Heterozygous SNVs between BoeWGS1.0 and PN40024, Bielefeld University, 2019.PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2938178D. Holtgräwe, B. Pucker, T. Rosleff Sörensen, and B. Weisshaar, Homozygous SNVs between BoeWGS1.0 and PN40024, Bielefeld University, 2019.PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2938185D. Holtgräwe, B. Pucker, T. Rosleff Sörensen, and B. Weisshaar, Description and mapping positions of BoeWGS1.0 contigs, Bielefeld University, 2019.PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2937697B. Pucker, M. Busche, P. Viehöver, B. Weisshaar, and R. Stracke, Genome assemblies of Musa acuminata Dwarf Cavendish, Bielefeld University, 2019.PUB | Dateien verfügbar | DOI
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936783H. Sheehan, T. Feng, N. Walker‐Hale, S. Lopez‐Nieves, B. Pucker, R. Guo, W. C. Yim, R. Badgami, A. Timoneda, L. Zhao, et al., “Evolution of L‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales ”, New Phytologist, 2019, 227, : 914-929.PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698B. Pucker, D. Holtgräwe, K. B. Stadermann, K. Frey, B. Huettel, R. Reinhardt, and B. Weisshaar, “Chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set”, PLoS One, 2019, 14, : e0216233.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | GenBank
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2019 | Datenpublikation | PUB-ID: 2949309B. Pucker, D. Holtgräwe, K. B. Stadermann, and B. Weisshaar, Chromosome-level Assembly Reveals the Niederzenz (Nd-1) Genome Structure and Gene Set, Leibniz Institute Of Plant Genetics And Crop Plant Research (Ipk), Seeland Ot Gatersleben, 2019.PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2934220B. Pucker, and K. Frey, RNA-Seq read coverage depth of splice sites in fungi, Bielefeld University, 2019.PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2934226B. Pucker, and K. Frey, RNA-Seq read coverage depth of splice sites in animals, Bielefeld University, 2019.PUB | Dateien verfügbar | DOI
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935844B. Pucker, H. Schilbert, and S. F. Schumacher, “Integrating Molecular Biology and Bioinformatics Education”, Journal of Integrative Bioinformatics, 2019, 16, : 20190005.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135B. Pucker, C. Rückert, R. Stracke, P. Viehöver, J. Kalinowski, and B. Weisshaar, “Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome”, Genes, 2019, 10, : 671.PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079A. Timoneda, T. Feng, H. Sheehan, N. Walker‐Hale, B. Pucker, S. Lopez‐Nieves, R. Guo, and S. Brockington, “The evolution of betalain biosynthesis in Caryophyllales”, New Phytologist, 2019, 224, 71-85.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2019 | Preprint | Veröffentlicht | PUB-ID: 2935737B. Pucker, T. Feng, and S. F. Brockington, “Next generation sequencing to investigate genomic diversity in Caryophyllales”, bioRxiv, 2019.PUB | PDF | Download (ext.) | Preprint
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2019 | Preprint | Veröffentlicht | PUB-ID: 2934975B. Pucker, “Mapping-based genome size estimation”, bioRxiv, 2019.PUB | PDF | Download (ext.) | Preprint
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296C. M. Whitford, S. Dymek, D. Kerkhoff, C. März, O. Schmidt, M. Edich, J. Droste, B. Pucker, C. Rückert, and J. Kalinowski, “Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications”, Journal of Biological Engineering, 2018, 12, : 13.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931064C. Brinkrolf, N. A. Henke, L. Ochel, B. Pucker, O. Kruse, and P. Lutter, “Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA”, Journal of Integrative Bioinformatics, 2018, 15, : 20180018.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2018 | Datenpublikation | PUB-ID: 2931315B. Pucker, RNA-Seq read coverage depth of splice sites in plants, Bielefeld University, 2018.PUB | Dateien verfügbar | DOI
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870B. Pucker, and S. F. Brockington, “Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes”, BMC Genomics, 2018, 19, : 980.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2018 | Diskussionspapier | Veröffentlicht | PUB-ID: 2920633A. Friedrich, and B. Pucker, Peer-review as a teaching method, Carl Von Ossietzky Universität Oldenburg, 2018.PUB | PDF | Download (ext.)
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2018 | Preprint | Veröffentlicht | PUB-ID: 2931225H. Schilbert, V. Pellegrinelli, S. Rodriguez-Cuenca, A. Vidal-Puig, and B. Pucker, “Harnessing natural diversity to identify key amino acid residues in prolidase”, bioRxiv, 2018.PUB | Download (ext.) | Preprint
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026M. Haak, S. Vinke, W. Keller, J. Droste, C. Rückert, J. Kalinowski, and B. Pucker, “High Quality de Novo Transcriptome Assembly of Croton tiglium”, Frontiers in Molecular Biosciences, 2018, 5, : 62.PUB | PDF | DOI | Download (ext.)
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2017 | Datenpublikation | PUB-ID: 2930821L. Karsten, D. Bergen, C. Drake, S. Dymek, M. Edich, M. Haak, D. Kerkhoff, Y. Kerkhoff, M. Liebers, C. März, et al., Expanding The Genetic Code, Bielefeld University, 2017.PUB | Dateien verfügbar | DOI
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524B. Pucker, D. Holtgräwe, and B. Weisshaar, “Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence”, BMC Research Notes, 2017, 10, : 667.PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462R. Alkhateeb, C. Rückert, O. Rupp, B. Pucker, G. Hublik, D. Wibberg, K. Niehaus, A. Pühler, and F. - J. Vorhölter, “Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data”, Journal of Biotechnology, 2017, 253, 55-61.PUB | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905844B. Pucker, D. Holtgräwe, T. Rosleff Sörensen, R. Stracke, P. Viehöver, and B. Weisshaar, “A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny”, PLoS One, 2016, 11, : e0164321.PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778R. Stracke, D. Holtgräwe, J. Schneider, B. Pucker, T. Rosleff Sörensen, and B. Weisshaar, “Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris )”, BMC Plant Biology, 2014, 14, : 249.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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