Boas Pucker

boas.pucker@uni-bielefeld.de
ORCID logo https://orcid.org/0000-0002-3321-7471

PEVZ-ID
64858304

62 Publikationen

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  • [62]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2981194
    Feng, T.; Pucker, B.; Kuang, T.; Song, B.; Yang, Y.; Lin, N.; Zhang, H.; Moore, M. J.; Brockington, S. F.; Wang, Q.; Deng, T.; Wang, H.; Sun, H. (2023): The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine adaptation Communications Biology ,6:(1):706
    PUB | DOI | WoS | PubMed | Europe PMC | CNGBdb Project
     
  • [61]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965468
    Rajput, R.; Tyagi, S.; Naik, J.; Pucker, B.; Stracke, R.; Pandey, A. (2022): The R2R3-MYB gene family in Cicer arietinum: genome-wide identification and expression analysis leads to functional characterization of proanthocyanidin biosynthesis regulators in the seed coat Planta,256:(4):67
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [60]
    2022 | Datenpublikation | PUB-ID: 2963492 OA
    Pucker, B.; Schilbert, H.; Viehöver, P.; Weisshaar, B.; Holtgräwe, D. (2022): Supplementary material related to MBS analysis of seed quality parameters in Brassica napus. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [59]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945592
    Pellegrinelli, V.; Rodriguez-Cuenca, S.; Rouault, C.; Schilbert, H.; Virtue, S.; Moreno-Navarrete, J. M.; Bidault, G.; Borrego, M. del C. V.; Dias, A. R.; Pucker, B.; Dale, M.; Campbell, M.; Carobbio, S.; Aron-Wisnewsky, J.; Mora, S.; Masiero, M.; Emmanouilidou, A.; Mukhopadhyay, S.; Dougan, G.; Hoed, M. den; Loos, R.; Fernández-Real, J. M.; Chiarugi, D.; Clément, K.; Vidal-Puig, A. (2022): Dysregulation of macrophage PEPD in obesity determines adipose tissue fibro-inflammation and insulin resistance Nature Metabolism,4:(4): 476-494.
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  • [58]
    2021 | Datenpublikation | PUB-ID: 2956654 OA
    Schilbert, H.; Kleinbölting, N.; Weisshaar, B.; Pucker, B. (2021): Arabidopsis thaliana methylation pattern analysis based on ONT sequence reads. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [57]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952434 OA
    Pucker, B.; Kleinbölting, N.; Weisshaar, B. (2021): Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis BMC Genomics,22:599
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  • [56]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943037 OA
    Sielemann, K.; Weisshaar, B.; Pucker, B. (2021): Reference-based QUantification Of gene Dispensability (QUOD) Plant Methods,17:(1):18
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  • [55]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2952659
    Naik, J.; Rajput, R.; Pucker, B.; Stracke, R.; Pandey, A. (2021): The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula Plant Molecular Biology,106:(1-2): 157-172.
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  • [54]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955954 OA
    Pucker, B.; Singh, H. B.; Kumari, M.; Khan, M. I.; Brockington, S. F. (2021): The report of anthocyanins in the betalain-pigmented genus Hylocereus is not well evidenced and is not a strong basis to refute the mutual exclusion paradigm BMC Plant Biology,21:(1):297
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  • [53]
    2021 | Datenpublikation | PUB-ID: 2956788 OA
    Pucker, B.; Brockington, S. (2021): Pitaya transcriptome assemblies and investigation of transcript abundances II. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [52]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955558
    Montero, H.; Lee, T.; Pucker, B.; Ferreras-Garrucho, G.; Oldroyd, G.; Brockington, S. F.; Miyao, A.; Paszkowski, U. (2021): A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage Proceedings of the National Academy of Sciences,118:(25):e2105281118
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  • [51]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938807
    Busche, M.; Pucker, B.; Viehöver, P.; Weisshaar, B.; Stracke, R. (2020): Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2 G3: Genes|Genomes|Genetics,10:(1): 37-42.
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  • [50]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655 OA
    Holtgräwe, D.; Rosleff Soerensen, T.; Hausmann, L.; Pucker, B.; Viehöver, P.; Töpfer, R.; Weisshaar, B. (2020): A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping Frontiers in Plant Science,11:156
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
     
  • [49]
    2020 | Datenpublikation | PUB-ID: 2942069 OA
    Schilbert, H.; Rempel, A.; Pucker, B. (2020): Gold standard of Nd1 vs TAIR10 sequence variants. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [48]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341 OA
    Schilbert, H.; Rempel, A.; Pucker, B. (2020): Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data Plants,9:(4):439
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  • [47]
    2020 | Datenpublikation | PUB-ID: 2946079 OA
    Sielemann, K.; Weisshaar, B.; Pucker, B. (2020): Reference-based QUantification Of gene Dispensability (QUOD) - test dataset. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [46]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935311 OA
    Frey, K.; Pucker, B. (2020): Animal, fungi, and plant genome sequences harbour different non-canonical splice sites Cells,9:(2):458
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  • [45]
    2020 | Datenpublikation | PUB-ID: 2946374 OA
    Pucker, B.; Brockington, S. (2020): Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [44]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946440 OA
    Pucker, B.; Pandey, A.; Weisshaar, B.; Stracke, R. (2020): The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns PLoS One,15:(10):e0239275
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  • [43]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948720 OA
    Pucker, B.; Schwandner, A.; Becker, S.; Hausmann, L.; Viehöver, P.; Töpfer, R.; Weisshaar, B.; Holtgräwe, D. (2020): RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile Plants,9:(11):1548
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
  • [42]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946066 OA
    Sielemann, K.; Hafner, A.; Pucker, B. (2020): The reuse of public datasets in the life sciences: potential risks and rewards PeerJ,8:e9954
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  • [41]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669 OA
    Siadjeu, C.; Pucker, B.; Viehöver, P.; Albach, D. C.; Weisshaar, B. (2020): High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing Genes,11:(3):274
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
     
  • [40]
    2020 | Datenpublikation | PUB-ID: 2941469 OA
    Pucker, B.; Siadjeu, C.; Viehöver, P.; Albach, D.; Weisshaar, B. (2020): Dioscorea dumetorum genome sequence v1.0. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [39]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2946565
    Xu, B.; Taylor, L.; Pucker, B.; Feng, T.; Glover, B. J.; Brockington, S. F. (2020): The land plant‐specific MIXTA‐MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of land New Phytologist,nph.16997
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  • [38]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944597 OA
    Pucker, B.; Reiher, F.; Schilbert, H. (2020): Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tiglium Plants,9:(9): 1103.
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  • [37]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943062
    Choi, J.; Lee, T.; Cho, J.; Servante, E. K.; Pucker, B.; Summers, W.; Bowden, S.; Rahimi, M.; An, K.; An, G.; Bouwmeester, H. J.; Wallington, E. J.; Oldroyd, G.; Paszkowski, U. (2020): The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice Nature Communications,11:(1):2114
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  • [36]
    2020 | Datenpublikation | PUB-ID: 2941041 OA
    Pucker, B.; Feng, T.; Brockington, S. (2020): Next generation sequencing to investigate genomic diversity in Caryophyllales - Kewa caespitosa. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [35]
    2020 | Datenpublikation | PUB-ID: 2941045 OA
    Pucker, B.; Feng, T.; Brockington, S. (2020): Next generation sequencing to investigate genomic diversity in Caryophyllales - Pharnaceum exiguum. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [34]
    2020 | Datenpublikation | PUB-ID: 2941043 OA
    Pucker, B.; Feng, T.; Brockington, S. (2020): Next generation sequencing to investigate genomic diversity in Caryophyllales - Macarthuria australis. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [33]
    2020 | Datenpublikation | PUB-ID: 2941047 OA
    Pucker, B. (2020): Arabidopsis thaliana Nd-1 Illumina short reads. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [32]
    2019 | Preprint | Veröffentlicht | PUB-ID: 2934778 OA
    Baasner, J. - S.; Howard, D.; Pucker, B. (2019): Influence of neighboring small sequence variants on functional impact prediction bioRxiv
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  • [31]
    2019 | Datenpublikation | PUB-ID: 2937972 OA
    Pucker, B.; Busche, M.; Viehöver, P.; Weisshaar, B.; Stracke, R. (2019): Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [30]
    2019 | Datenpublikation | PUB-ID: 2936278 OA
    Pucker, B.; Busche, M.; Viehöver, P.; Weisshaar, B.; Stracke, R. (2019): Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [29]
    2019 | Datenpublikation | PUB-ID: 2938180 OA
    Holtgräwe, D.; Pucker, B.; Rosleff Sörensen, T.; Weisshaar, B. (2019): Heterozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [28]
    2019 | Datenpublikation | PUB-ID: 2938178 OA
    Holtgräwe, D.; Pucker, B.; Rosleff Sörensen, T.; Weisshaar, B. (2019): Homozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [27]
    2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938013 OA
    Pucker, B.; Schilbert, H. (2019): Genomics and Transcriptomics Advance in Plant Sciences. In: Sudhir P. Singh; Santosh Kumar Upadhyay; Ashutosh Pandey; Sunil Kumar (Hrsg.): Molecular Approaches in Plant Biology and Environmental Challenges. Singapore: Springer. (Energy, Environment, and Sustainability, ). S. 419-448.
    PUB | PDF | DOI
     
  • [26]
    2019 | Datenpublikation | PUB-ID: 2938185 OA
    Holtgräwe, D.; Pucker, B.; Rosleff Sörensen, T.; Weisshaar, B. (2019): Description and mapping positions of BoeWGS1.0 contigs. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [25]
    2019 | Datenpublikation | PUB-ID: 2937697 OA
    Pucker, B.; Busche, M.; Viehöver, P.; Weisshaar, B.; Stracke, R. (2019): Genome assemblies of Musa acuminata Dwarf Cavendish. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [24]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936783
    Sheehan, H.; Feng, T.; Walker‐Hale, N.; Lopez‐Nieves, S.; Pucker, B.; Guo, R.; Yim, W. C.; Badgami, R.; Timoneda, A.; Zhao, L.; Tiley, H.; Copetti, D.; Sanderson, M. J.; Cushman, J. C.; Moore, M. J.; Smith, S. A.; Brockington, S. F. (2019): Evolution of L‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales New Phytologist,227:(3):914-929
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [23]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698 OA
    Pucker, B.; Holtgräwe, D.; Stadermann, K. B.; Frey, K.; Huettel, B.; Reinhardt, R.; Weisshaar, B. (2019): Chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set PLoS One,14:(5):e0216233
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | GenBank
     
  • [22]
    2019 | Datenpublikation | PUB-ID: 2949309
    Pucker, B.; Holtgräwe, D.; Stadermann, K. B.; Weisshaar, B. (2019): Chromosome-level Assembly Reveals the Niederzenz (Nd-1) Genome Structure and Gene Set. Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben.
    PUB | Dateien verfügbar | DOI
     
  • [21]
    2019 | Bielefelder E-Dissertation | PUB-ID: 2935794 OA
    Pucker, B. (2019): De novo Nd-1 genome assembly reveals genomic diversity of Arabidopsis thaliana and facilitates genome-wide non-canonical splice site analysis across plant species. Bielefeld: Universität Bielefeld.
    PUB | PDF | DOI
     
  • [20]
    2019 | Datenpublikation | PUB-ID: 2934220 OA
    Pucker, B.; Frey, K. (2019): RNA-Seq read coverage depth of splice sites in fungi. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [19]
    2019 | Datenpublikation | PUB-ID: 2934226 OA
    Pucker, B.; Frey, K. (2019): RNA-Seq read coverage depth of splice sites in animals. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [18]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935844 OA
    Pucker, B.; Schilbert, H.; Schumacher, S. F. (2019): Integrating Molecular Biology and Bioinformatics Education Journal of Integrative Bioinformatics,16:(3):20190005
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  • [17]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135 OA
    Pucker, B.; Rückert, C.; Stracke, R.; Viehöver, P.; Kalinowski, J.; Weisshaar, B. (2019): Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome Genes,10:(9):671
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
  • [16]
    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079
    Timoneda, A.; Feng, T.; Sheehan, H.; Walker‐Hale, N.; Pucker, B.; Lopez‐Nieves, S.; Guo, R.; Brockington, S. (2019): The evolution of betalain biosynthesis in Caryophyllales New Phytologist,224:(1): 71-85.
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  • [15]
    2019 | Preprint | Veröffentlicht | PUB-ID: 2935737 OA
    Pucker, B.; Feng, T.; Brockington, S. F. (2019): Next generation sequencing to investigate genomic diversity in Caryophyllales bioRxiv
    PUB | PDF | Download (ext.) | Preprint
     
  • [14]
    2019 | Preprint | Veröffentlicht | PUB-ID: 2934975 OA
    Pucker, B. (2019): Mapping-based genome size estimation bioRxiv
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  • [13]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296 OA
    Whitford, C. M.; Dymek, S.; Kerkhoff, D.; März, C.; Schmidt, O.; Edich, M.; Droste, J.; Pucker, B.; Rückert, C.; Kalinowski, J. (2018): Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications Journal of Biological Engineering,12:(1):13
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  • [12]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931064 OA
    Brinkrolf, C.; Henke, N. A.; Ochel, L.; Pucker, B.; Kruse, O.; Lutter, P. (2018): Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA Journal of Integrative Bioinformatics,15:(3):20180018
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  • [11]
    2018 | Datenpublikation | PUB-ID: 2931315 OA
    Pucker, B. (2018): RNA-Seq read coverage depth of splice sites in plants. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [10]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870 OA
    Pucker, B.; Brockington, S. F. (2018): Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes BMC Genomics,19:(1):980
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  • [9]
    2018 | Diskussionspapier | Veröffentlicht | PUB-ID: 2920633 OA
    Friedrich, A.; Pucker, B. (2018): Peer-review as a teaching method. Carl von Ossietzky Universität Oldenburg.
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  • [8]
    2018 | Preprint | Veröffentlicht | PUB-ID: 2931225
    Schilbert, H.; Pellegrinelli, V.; Rodriguez-Cuenca, S.; Vidal-Puig, A.; Pucker, B. (2018): Harnessing natural diversity to identify key amino acid residues in prolidase bioRxiv
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  • [7]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026 OA
    Haak, M.; Vinke, S.; Keller, W.; Droste, J.; Rückert, C.; Kalinowski, J.; Pucker, B. (2018): High Quality de Novo Transcriptome Assembly of Croton tiglium Frontiers in Molecular Biosciences,5:62
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  • [6]
    2017 | Datenpublikation | PUB-ID: 2930821 OA
    Karsten, L.; Bergen, D.; Drake, C.; Dymek, S.; Edich, M.; Haak, M.; Kerkhoff, D.; Kerkhoff, Y.; Liebers, M.; März, C.; Schlüter, L.; Schmidt, O.; Vinke, S.; M. Whitford, C.; Pucker, B.; Droste, J.; Rückert, C.; Müller, K.; Kalinowski, J. (2017): Expanding The Genetic Code. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [5]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524 OA
    Pucker, B.; Holtgräwe, D.; Weisshaar, B. (2017): Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence BMC Research Notes,10:(1):667
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  • [4]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462
    Alkhateeb, R.; Rückert, C.; Rupp, O.; Pucker, B.; Hublik, G.; Wibberg, D.; Niehaus, K.; Pühler, A.; Vorhölter, F. - J. (2017): Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data Journal of Biotechnology,253: 55-61.
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  • [3]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905844 OA
    Pucker, B.; Holtgräwe, D.; Rosleff Sörensen, T.; Stracke, R.; Viehöver, P.; Weisshaar, B. (2016): A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny PLoS One,11:(10):e0164321
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
     
  • [2]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778 OA
    Stracke, R.; Holtgräwe, D.; Schneider, J.; Pucker, B.; Rosleff Sörensen, T.; Weisshaar, B. (2014): Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ) BMC Plant Biology,14:(1):249
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  • [1]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2905012 OA
    Fust, A.; Hollmann, B.; Pucker, B.; Wollborn, D.; Tiemann, J.; Droste, J.; Brosda, S.; Blunk, S.; Riedl, S.; Bleckwehl, T. (2014): The Transformers. From Carbon Dioxide to Biofuel.
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