46 Publikationen

Alle markieren

[46]
2020 | Preprint | Veröffentlicht | PUB-ID: 2944597 OA
Pucker, B., Reiher, F. & Schilbert, H. (2020). Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tiglium. bioRxiv. Cold Spring Harbor Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
[45]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341 OA
Schilbert, H., Rempel, A. & Pucker, B. (2020). Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data. Plants, 9(4): 439. MDPI AG. doi:10.3390/plants9040439.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv
 
[44]
2020 | Datenpublikation | PUB-ID: 2942069 OA
Schilbert, H., Rempel, A. & Pucker, B. (2020). Gold standard of Nd1 vs TAIR10 sequence variants. Bielefeld University. doi:10.4119/unibi/2942069.
PUB | Dateien verfügbar | DOI
 
[43]
2020 | Datenpublikation | PUB-ID: 2941469 OA
Pucker, B., Siadjeu, C., Viehöver, P., Albach, D. & Weisshaar, B. (2020). Dioscorea dumetorum genome sequence v1.0. Bielefeld University. doi:10.4119/unibi/2941469.
PUB | Dateien verfügbar | DOI
 
[42]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669 OA
Siadjeu, C., Pucker, B., Viehöver, P., Albach, D.C. & Weisshaar, B. (2020). High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing. Genes, 11(3): 274. MDPI AG. doi:10.3390/genes11030274.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project | GenBank
 
[41]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943062
Choi, J., Lee, T., Cho, J., Servante, E.K., Pucker, B., Summers, W., Bowden, S., Rahimi, M., An, K., An, G., Bouwmeester, H.J., Wallington, E.J., Oldroyd, G. & Paszkowski, U. (2020). The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice. Nature Communications, 11(1): 2114. Nature Publishing Group. doi:10.1038/s41467-020-16021-1.
PUB | DOI | Download (ext.) | PubMed | Europe PMC
 
[40]
2020 | Preprint | Veröffentlicht | PUB-ID: 2943037 OA
Frey, K., Weisshaar, B. & Pucker, B. (2020). Reference-based QUantification Of gene Dispensability (QUOD). bioRxiv. Cold Spring Harbor Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
[39]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935311 OA
Frey, K. & Pucker, B. (2020). Animal, fungi, and plant genome sequences harbour different non-canonical splice sites. Cells, 9(2): 458. MDPI. doi:10.3390/cells9020458.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv
 
[38]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655 OA
Holtgräwe, D., Rosleff Soerensen, T., Hausmann, L., Pucker, B., Viehöver, P., Töpfer, R. & Weisshaar, B. (2020). A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping. Frontiers in Plant Science, 11: 156. Frontiers Media SA. doi:10.3389/fpls.2020.00156.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project | GenBank
 
[37]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938807
Busche, M., Pucker, B., Viehöver, P., Weisshaar, B. & Stracke, R. (2020). Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2. G3: Genes|Genomes|Genetics, 10(1), 37-42. SSPA Scientific Society Publisher Alliance. doi:10.1534/g3.119.400847.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project
 
[36]
2020 | Datenpublikation | PUB-ID: 2941041 OA
Pucker, B., Feng, T. & Brockington, S. (2020). Next generation sequencing to investigate genomic diversity in Caryophyllales - Kewa caespitosa. Bielefeld University. doi:10.4119/unibi/2941041.
PUB | Dateien verfügbar | DOI
 
[35]
2020 | Datenpublikation | PUB-ID: 2941045 OA
Pucker, B., Feng, T. & Brockington, S. (2020). Next generation sequencing to investigate genomic diversity in Caryophyllales - Pharnaceum exiguum. Bielefeld University. doi:10.4119/unibi/2941045.
PUB | Dateien verfügbar | DOI
 
[34]
2020 | Datenpublikation | PUB-ID: 2941043 OA
Pucker, B., Feng, T. & Brockington, S. (2020). Next generation sequencing to investigate genomic diversity in Caryophyllales - Macarthuria australis. Bielefeld University. doi:10.4119/unibi/2941043.
PUB | Dateien verfügbar | DOI
 
[33]
2020 | Datenpublikation | PUB-ID: 2941047 OA
Pucker, B. (2020). Arabidopsis thaliana Nd-1 Illumina short reads. Bielefeld University. doi:10.4119/unibi/2941047.
PUB | Dateien verfügbar | DOI
 
[32]
2020 | Preprint | Veröffentlicht | PUB-ID: 2940694
Pucker, B., Pandey, A., Weisshaar, B. & Stracke, R. (2020). The R2R3-MYB gene family in banana (Musa acuminata): genome-wide identification, classification and expression patterns. bioRxiv. Cold Spring Harbor Laboratory.
PUB | Download (ext.) | bioRxiv
 
[31]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935844 OA
Pucker, B., Schilbert, H. & Schumacher, S.F. (2019). Integrating Molecular Biology and Bioinformatics Education. Journal of Integrative Bioinformatics, 16(3): 20190005. de Gruyter. doi:10.1515/jib-2019-0005.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[30]
2019 | Datenpublikation | PUB-ID: 2938178 OA
Holtgräwe, D., Pucker, B., Rosleff Sörensen, T. & Weisshaar, B. (2019). Homozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University. doi:10.4119/unibi/2938178.
PUB | Dateien verfügbar | DOI
 
[29]
2019 | Datenpublikation | PUB-ID: 2938180 OA
Holtgräwe, D., Pucker, B., Rosleff Sörensen, T. & Weisshaar, B. (2019). Heterozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University. doi:10.4119/unibi/2938180.
PUB | Dateien verfügbar | DOI
 
[28]
2019 | Datenpublikation | PUB-ID: 2938185 OA
Holtgräwe, D., Pucker, B., Rosleff Sörensen, T. & Weisshaar, B. (2019). Description and mapping positions of BoeWGS1.0 contigs. Bielefeld University. doi:10.4119/unibi/2938185.
PUB | Dateien verfügbar | DOI
 
[27]
2019 | Datenpublikation | PUB-ID: 2937972 OA
Pucker, B., Busche, M., Viehöver, P., Weisshaar, B. & Stracke, R. (2019). Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang. Bielefeld University. doi:10.4119/unibi/2937972.
PUB | Dateien verfügbar | DOI
 
[26]
2019 | Datenpublikation | PUB-ID: 2937697 OA
Pucker, B., Busche, M., Viehöver, P., Weisshaar, B. & Stracke, R. (2019). Genome assemblies of Musa acuminata Dwarf Cavendish. Bielefeld University. doi:10.4119/unibi/2937697.
PUB | Dateien verfügbar | DOI
 
[25]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698 OA
Pucker, B., Holtgräwe, D., Stadermann, K.B., Frey, K., Huettel, B., Reinhardt, R. & Weisshaar, B. (2019). A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set. PLOS ONE, 14(5): e0216233. Public Library of Science. doi:10.1371/journal.pone.0216233.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv | GenBank
 
[24]
2019 | Bielefelder E-Dissertation | PUB-ID: 2935794 OA
Pucker, B. (2019). De novo Nd-1 genome assembly reveals genomic diversity of Arabidopsis thaliana and facilitates genome-wide non-canonical splice site analysis across plant species. Bielefeld: Universität Bielefeld. doi:10.4119/unibi/2935794.
PUB | PDF | DOI
 
[23]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135 OA
Pucker, B., Rückert, C., Stracke, R., Viehöver, P., Kalinowski, J. & Weisshaar, B. (2019). Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome. Genes, 10(9): 671. MDPI. doi:10.3390/genes10090671.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project
 
[22]
2019 | Datenpublikation | PUB-ID: 2934220 OA
Pucker, B. & Frey, K. (2019). RNA-Seq read coverage depth of splice sites in fungi. Bielefeld University. doi:10.4119/unibi/2934220.
PUB | Dateien verfügbar | DOI
 
[21]
2019 | Datenpublikation | PUB-ID: 2934226 OA
Pucker, B. & Frey, K. (2019). RNA-Seq read coverage depth of splice sites in animals. Bielefeld University. doi:10.4119/unibi/2934226.
PUB | Dateien verfügbar | DOI
 
[20]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079
Timoneda, A., Feng, T., Sheehan, H., Walker‐Hale, N., Pucker, B., Lopez‐Nieves, S., Guo, R. & Brockington, S. (2019). The evolution of betalain biosynthesis in Caryophyllales. New Phytologist, 224(1), 71-85. Wiley-Blackwell. doi:10.1111/nph.15980.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[19]
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938013
Pucker, B. & Schilbert, H. (2019). Genomics and Transcriptomics Advance in Plant Sciences (Energy, Environment, and Sustainability). In S.P. Singh, S.K. Upadhyay, A. Pandey & S. Kumar (Hrsg.), Molecular Approaches in Plant Biology and Environmental Challenges. Singapore: Springer. doi:10.1007/978-981-15-0690-1_19.
PUB | DOI
 
[18]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936783
Sheehan, H., Feng, T., Walker‐Hale, N., Lopez‐Nieves, S., Pucker, B., Guo, R., Yim, W.C., Badgami, R., Timoneda, A., Zhao, L., Tiley, H., Copetti, D., Sanderson, M.J., Cushman, J.C., Moore, M.J., Smith, S.A. & Brockington, S.F. (2019). Evolution of L‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales . New Phytologist: nph.16089. Wiley-Blackwell. doi:10.1111/nph.16089.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2019 | Preprint | Veröffentlicht | PUB-ID: 2935737 OA
Pucker, B., Feng, T. & Brockington, S.F. (2019). Next generation sequencing to investigate genomic diversity in Caryophyllales. bioRxiv. Cold Spring Harbour Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
[16]
2019 | Preprint | Veröffentlicht | PUB-ID: 2934975 OA
Pucker, B. (2019). Mapping-based genome size estimation. bioRxiv. Cold Spring Harbor Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
[15]
2019 | Preprint | Veröffentlicht | PUB-ID: 2934778 OA
Baasner, J.-S., Howard, D. & Pucker, B. (2019). Influence of neighboring small sequence variants on functional impact prediction. bioRxiv. Cold Spring Harbor Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
[14]
2019 | Datenpublikation | PUB-ID: 2936278 OA
Pucker, B., Busche, M., Viehöver, P., Weisshaar, B. & Stracke, R. (2019). Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang. Bielefeld University. doi:10.4119/unibi/2936278.
PUB | Dateien verfügbar | DOI
 
[13]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870 OA
Pucker, B. & Brockington, S.F. (2018). Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes. BMC Genomics, 19(1): 980. Springer Nature. doi:10.1186/s12864-018-5360-z.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv
 
[12]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931064
Brinkrolf, C., Henke, N.A., Ochel, L., Pucker, B., Kruse, O. & Lutter, P. (2018). Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA. Journal of Integrative Bioinformatics, 15(3): 20180018. Walter de Gruyter GmbH. doi:10.1515/jib-2018-0018.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[11]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296 OA
Whitford, C.M., Dymek, S., Kerkhoff, D., März, C., Schmidt, O., Edich, M., Droste, J., Pucker, B., Rückert, C. & Kalinowski, J. (2018). Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications. Journal of Biological Engineering, 12(1): 13. Springer Nature America, Inc. doi:10.1186/s13036-018-0105-8.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[10]
2018 | Diskussionspapier | Veröffentlicht | PUB-ID: 2920633 OA
Friedrich, A. & Pucker, B. (2018). Peer-review as a teaching method (Working Paper der AG Forschendes Lernen in der dghd). Carl von Ossietzky Universität Oldenburg.
PUB | PDF | Download (ext.)
 
[9]
2018 | Preprint | Veröffentlicht | PUB-ID: 2931225
Schilbert, H., Pellegrinelli, V., Rodriguez-Cuenca, S., Vidal-Puig, A. & Pucker, B. (2018). Harnessing natural diversity to identify key amino acid residues in prolidase. bioRxiv. Cold Spring Harbor Laboratory.
PUB | Download (ext.) | bioRxiv
 
[8]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026 OA
Haak, M., Vinke, S., Keller, W., Droste, J., Rückert, C., Kalinowski, J. & Pucker, B. (2018). High Quality de Novo Transcriptome Assembly of Croton tiglium. Frontiers in Molecular Biosciences, 5: 62. Frontiers Media SA. doi:10.3389/fmolb.2018.00062.
PUB | PDF | DOI | Download (ext.)
 
[7]
2018 | Datenpublikation | PUB-ID: 2931315 OA
Pucker, B. (2018). RNA-Seq read coverage depth of splice sites in plants. Bielefeld University. doi:10.4119/unibi/2931315.
PUB | Dateien verfügbar | DOI
 
[6]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524 OA
Pucker, B., Holtgräwe, D. & Weisshaar, B. (2017). Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence. BMC Research Notes, 10(1): 667. Springer Nature. doi:10.1186/s13104-017-2985-y.
PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
 
[5]
2017 | Datenpublikation | PUB-ID: 2930821 OA
Karsten, L., Bergen, D., Drake, C., Dymek, S., Edich, M., Haak, M., Kerkhoff, D., Kerkhoff, Y., Liebers, M., März, C., Schlüter, L., Schmidt, O., Vinke, S., M. Whitford, C., Pucker, B., Droste, J., Rückert, C., M. Müller, K. & Kalinowski, J. (2017). Expanding The Genetic Code. Bielefeld University. doi:10.13140/RG.2.2.20342.91203.
PUB | Dateien verfügbar | DOI
 
[4]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462
Alkhateeb, R., Rückert, C., Rupp, O., Pucker, B., Hublik, G., Wibberg, D., Niehaus, K., Pühler, A. & Vorhölter, F.-J. (2017). Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data. Journal of Biotechnology, 253, 55-61. Elsevier BV. doi:10.1016/j.jbiotec.2017.05.009.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905844 OA
Pucker, B., Holtgräwe, D., Rosleff Sörensen, T., Stracke, R., Viehöver, P. & Weisshaar, B. (2016). A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. PLoS ONE, 11(10): e0164321. Public Library of Science. doi:10.1371/journal.pone.0164321.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
 
[2]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778 OA
Stracke, R., Holtgräwe, D., Schneider, J., Pucker, B., Rosleff Sörensen, T. & Weisshaar, B. (2014). Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ). BMC Plant Biology, 14(1): 249. Springer Science + Business Media. doi:10.1186/s12870-014-0249-8.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[1]
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2905012 OA
Fust, A., Hollmann, B., Pucker, B., Wollborn, D., Tiemann, J., Droste, J., Brosda, S., Blunk, S., Riedl, S. & Bleckwehl, T. (2014). The Transformers. From Carbon Dioxide to Biofuel. Gehalten auf der International Genetically Engineered Machine Competition (IGEM) 2014. doi:10.13140/RG.2.2.30504.98566.
PUB | PDF | DOI
 

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46 Publikationen

Alle markieren

[46]
2020 | Preprint | Veröffentlicht | PUB-ID: 2944597 OA
Pucker, B., Reiher, F. & Schilbert, H. (2020). Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tiglium. bioRxiv. Cold Spring Harbor Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
[45]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341 OA
Schilbert, H., Rempel, A. & Pucker, B. (2020). Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data. Plants, 9(4): 439. MDPI AG. doi:10.3390/plants9040439.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv
 
[44]
2020 | Datenpublikation | PUB-ID: 2942069 OA
Schilbert, H., Rempel, A. & Pucker, B. (2020). Gold standard of Nd1 vs TAIR10 sequence variants. Bielefeld University. doi:10.4119/unibi/2942069.
PUB | Dateien verfügbar | DOI
 
[43]
2020 | Datenpublikation | PUB-ID: 2941469 OA
Pucker, B., Siadjeu, C., Viehöver, P., Albach, D. & Weisshaar, B. (2020). Dioscorea dumetorum genome sequence v1.0. Bielefeld University. doi:10.4119/unibi/2941469.
PUB | Dateien verfügbar | DOI
 
[42]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669 OA
Siadjeu, C., Pucker, B., Viehöver, P., Albach, D.C. & Weisshaar, B. (2020). High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing. Genes, 11(3): 274. MDPI AG. doi:10.3390/genes11030274.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project | GenBank
 
[41]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943062
Choi, J., Lee, T., Cho, J., Servante, E.K., Pucker, B., Summers, W., Bowden, S., Rahimi, M., An, K., An, G., Bouwmeester, H.J., Wallington, E.J., Oldroyd, G. & Paszkowski, U. (2020). The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice. Nature Communications, 11(1): 2114. Nature Publishing Group. doi:10.1038/s41467-020-16021-1.
PUB | DOI | Download (ext.) | PubMed | Europe PMC
 
[40]
2020 | Preprint | Veröffentlicht | PUB-ID: 2943037 OA
Frey, K., Weisshaar, B. & Pucker, B. (2020). Reference-based QUantification Of gene Dispensability (QUOD). bioRxiv. Cold Spring Harbor Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
[39]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935311 OA
Frey, K. & Pucker, B. (2020). Animal, fungi, and plant genome sequences harbour different non-canonical splice sites. Cells, 9(2): 458. MDPI. doi:10.3390/cells9020458.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv
 
[38]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655 OA
Holtgräwe, D., Rosleff Soerensen, T., Hausmann, L., Pucker, B., Viehöver, P., Töpfer, R. & Weisshaar, B. (2020). A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping. Frontiers in Plant Science, 11: 156. Frontiers Media SA. doi:10.3389/fpls.2020.00156.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project | GenBank
 
[37]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938807
Busche, M., Pucker, B., Viehöver, P., Weisshaar, B. & Stracke, R. (2020). Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2. G3: Genes|Genomes|Genetics, 10(1), 37-42. SSPA Scientific Society Publisher Alliance. doi:10.1534/g3.119.400847.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project
 
[36]
2020 | Datenpublikation | PUB-ID: 2941041 OA
Pucker, B., Feng, T. & Brockington, S. (2020). Next generation sequencing to investigate genomic diversity in Caryophyllales - Kewa caespitosa. Bielefeld University. doi:10.4119/unibi/2941041.
PUB | Dateien verfügbar | DOI
 
[35]
2020 | Datenpublikation | PUB-ID: 2941045 OA
Pucker, B., Feng, T. & Brockington, S. (2020). Next generation sequencing to investigate genomic diversity in Caryophyllales - Pharnaceum exiguum. Bielefeld University. doi:10.4119/unibi/2941045.
PUB | Dateien verfügbar | DOI
 
[34]
2020 | Datenpublikation | PUB-ID: 2941043 OA
Pucker, B., Feng, T. & Brockington, S. (2020). Next generation sequencing to investigate genomic diversity in Caryophyllales - Macarthuria australis. Bielefeld University. doi:10.4119/unibi/2941043.
PUB | Dateien verfügbar | DOI
 
[33]
2020 | Datenpublikation | PUB-ID: 2941047 OA
Pucker, B. (2020). Arabidopsis thaliana Nd-1 Illumina short reads. Bielefeld University. doi:10.4119/unibi/2941047.
PUB | Dateien verfügbar | DOI
 
[32]
2020 | Preprint | Veröffentlicht | PUB-ID: 2940694
Pucker, B., Pandey, A., Weisshaar, B. & Stracke, R. (2020). The R2R3-MYB gene family in banana (Musa acuminata): genome-wide identification, classification and expression patterns. bioRxiv. Cold Spring Harbor Laboratory.
PUB | Download (ext.) | bioRxiv
 
[31]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935844 OA
Pucker, B., Schilbert, H. & Schumacher, S.F. (2019). Integrating Molecular Biology and Bioinformatics Education. Journal of Integrative Bioinformatics, 16(3): 20190005. de Gruyter. doi:10.1515/jib-2019-0005.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[30]
2019 | Datenpublikation | PUB-ID: 2938178 OA
Holtgräwe, D., Pucker, B., Rosleff Sörensen, T. & Weisshaar, B. (2019). Homozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University. doi:10.4119/unibi/2938178.
PUB | Dateien verfügbar | DOI
 
[29]
2019 | Datenpublikation | PUB-ID: 2938180 OA
Holtgräwe, D., Pucker, B., Rosleff Sörensen, T. & Weisshaar, B. (2019). Heterozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University. doi:10.4119/unibi/2938180.
PUB | Dateien verfügbar | DOI
 
[28]
2019 | Datenpublikation | PUB-ID: 2938185 OA
Holtgräwe, D., Pucker, B., Rosleff Sörensen, T. & Weisshaar, B. (2019). Description and mapping positions of BoeWGS1.0 contigs. Bielefeld University. doi:10.4119/unibi/2938185.
PUB | Dateien verfügbar | DOI
 
[27]
2019 | Datenpublikation | PUB-ID: 2937972 OA
Pucker, B., Busche, M., Viehöver, P., Weisshaar, B. & Stracke, R. (2019). Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang. Bielefeld University. doi:10.4119/unibi/2937972.
PUB | Dateien verfügbar | DOI
 
[26]
2019 | Datenpublikation | PUB-ID: 2937697 OA
Pucker, B., Busche, M., Viehöver, P., Weisshaar, B. & Stracke, R. (2019). Genome assemblies of Musa acuminata Dwarf Cavendish. Bielefeld University. doi:10.4119/unibi/2937697.
PUB | Dateien verfügbar | DOI
 
[25]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698 OA
Pucker, B., Holtgräwe, D., Stadermann, K.B., Frey, K., Huettel, B., Reinhardt, R. & Weisshaar, B. (2019). A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set. PLOS ONE, 14(5): e0216233. Public Library of Science. doi:10.1371/journal.pone.0216233.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv | GenBank
 
[24]
2019 | Bielefelder E-Dissertation | PUB-ID: 2935794 OA
Pucker, B. (2019). De novo Nd-1 genome assembly reveals genomic diversity of Arabidopsis thaliana and facilitates genome-wide non-canonical splice site analysis across plant species. Bielefeld: Universität Bielefeld. doi:10.4119/unibi/2935794.
PUB | PDF | DOI
 
[23]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135 OA
Pucker, B., Rückert, C., Stracke, R., Viehöver, P., Kalinowski, J. & Weisshaar, B. (2019). Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome. Genes, 10(9): 671. MDPI. doi:10.3390/genes10090671.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | bioRxiv | EBI - ENA Project
 
[22]
2019 | Datenpublikation | PUB-ID: 2934220 OA
Pucker, B. & Frey, K. (2019). RNA-Seq read coverage depth of splice sites in fungi. Bielefeld University. doi:10.4119/unibi/2934220.
PUB | Dateien verfügbar | DOI
 
[21]
2019 | Datenpublikation | PUB-ID: 2934226 OA
Pucker, B. & Frey, K. (2019). RNA-Seq read coverage depth of splice sites in animals. Bielefeld University. doi:10.4119/unibi/2934226.
PUB | Dateien verfügbar | DOI
 
[20]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079
Timoneda, A., Feng, T., Sheehan, H., Walker‐Hale, N., Pucker, B., Lopez‐Nieves, S., Guo, R. & Brockington, S. (2019). The evolution of betalain biosynthesis in Caryophyllales. New Phytologist, 224(1), 71-85. Wiley-Blackwell. doi:10.1111/nph.15980.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[19]
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938013
Pucker, B. & Schilbert, H. (2019). Genomics and Transcriptomics Advance in Plant Sciences (Energy, Environment, and Sustainability). In S.P. Singh, S.K. Upadhyay, A. Pandey & S. Kumar (Hrsg.), Molecular Approaches in Plant Biology and Environmental Challenges. Singapore: Springer. doi:10.1007/978-981-15-0690-1_19.
PUB | DOI
 
[18]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936783
Sheehan, H., Feng, T., Walker‐Hale, N., Lopez‐Nieves, S., Pucker, B., Guo, R., Yim, W.C., Badgami, R., Timoneda, A., Zhao, L., Tiley, H., Copetti, D., Sanderson, M.J., Cushman, J.C., Moore, M.J., Smith, S.A. & Brockington, S.F. (2019). Evolution of L‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales . New Phytologist: nph.16089. Wiley-Blackwell. doi:10.1111/nph.16089.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2019 | Preprint | Veröffentlicht | PUB-ID: 2935737 OA
Pucker, B., Feng, T. & Brockington, S.F. (2019). Next generation sequencing to investigate genomic diversity in Caryophyllales. bioRxiv. Cold Spring Harbour Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
[16]
2019 | Preprint | Veröffentlicht | PUB-ID: 2934975 OA
Pucker, B. (2019). Mapping-based genome size estimation. bioRxiv. Cold Spring Harbor Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
[15]
2019 | Preprint | Veröffentlicht | PUB-ID: 2934778 OA
Baasner, J.-S., Howard, D. & Pucker, B. (2019). Influence of neighboring small sequence variants on functional impact prediction. bioRxiv. Cold Spring Harbor Laboratory.
PUB | PDF | Download (ext.) | bioRxiv
 
[14]
2019 | Datenpublikation | PUB-ID: 2936278 OA
Pucker, B., Busche, M., Viehöver, P., Weisshaar, B. & Stracke, R. (2019). Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang. Bielefeld University. doi:10.4119/unibi/2936278.
PUB | Dateien verfügbar | DOI
 
[13]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870 OA
Pucker, B. & Brockington, S.F. (2018). Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes. BMC Genomics, 19(1): 980. Springer Nature. doi:10.1186/s12864-018-5360-z.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | bioRxiv
 
[12]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931064
Brinkrolf, C., Henke, N.A., Ochel, L., Pucker, B., Kruse, O. & Lutter, P. (2018). Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA. Journal of Integrative Bioinformatics, 15(3): 20180018. Walter de Gruyter GmbH. doi:10.1515/jib-2018-0018.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[11]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296 OA
Whitford, C.M., Dymek, S., Kerkhoff, D., März, C., Schmidt, O., Edich, M., Droste, J., Pucker, B., Rückert, C. & Kalinowski, J. (2018). Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications. Journal of Biological Engineering, 12(1): 13. Springer Nature America, Inc. doi:10.1186/s13036-018-0105-8.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[10]
2018 | Diskussionspapier | Veröffentlicht | PUB-ID: 2920633 OA
Friedrich, A. & Pucker, B. (2018). Peer-review as a teaching method (Working Paper der AG Forschendes Lernen in der dghd). Carl von Ossietzky Universität Oldenburg.
PUB | PDF | Download (ext.)
 
[9]
2018 | Preprint | Veröffentlicht | PUB-ID: 2931225
Schilbert, H., Pellegrinelli, V., Rodriguez-Cuenca, S., Vidal-Puig, A. & Pucker, B. (2018). Harnessing natural diversity to identify key amino acid residues in prolidase. bioRxiv. Cold Spring Harbor Laboratory.
PUB | Download (ext.) | bioRxiv
 
[8]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026 OA
Haak, M., Vinke, S., Keller, W., Droste, J., Rückert, C., Kalinowski, J. & Pucker, B. (2018). High Quality de Novo Transcriptome Assembly of Croton tiglium. Frontiers in Molecular Biosciences, 5: 62. Frontiers Media SA. doi:10.3389/fmolb.2018.00062.
PUB | PDF | DOI | Download (ext.)
 
[7]
2018 | Datenpublikation | PUB-ID: 2931315 OA
Pucker, B. (2018). RNA-Seq read coverage depth of splice sites in plants. Bielefeld University. doi:10.4119/unibi/2931315.
PUB | Dateien verfügbar | DOI
 
[6]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524 OA
Pucker, B., Holtgräwe, D. & Weisshaar, B. (2017). Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence. BMC Research Notes, 10(1): 667. Springer Nature. doi:10.1186/s13104-017-2985-y.
PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
 
[5]
2017 | Datenpublikation | PUB-ID: 2930821 OA
Karsten, L., Bergen, D., Drake, C., Dymek, S., Edich, M., Haak, M., Kerkhoff, D., Kerkhoff, Y., Liebers, M., März, C., Schlüter, L., Schmidt, O., Vinke, S., M. Whitford, C., Pucker, B., Droste, J., Rückert, C., M. Müller, K. & Kalinowski, J. (2017). Expanding The Genetic Code. Bielefeld University. doi:10.13140/RG.2.2.20342.91203.
PUB | Dateien verfügbar | DOI
 
[4]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462
Alkhateeb, R., Rückert, C., Rupp, O., Pucker, B., Hublik, G., Wibberg, D., Niehaus, K., Pühler, A. & Vorhölter, F.-J. (2017). Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data. Journal of Biotechnology, 253, 55-61. Elsevier BV. doi:10.1016/j.jbiotec.2017.05.009.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905844 OA
Pucker, B., Holtgräwe, D., Rosleff Sörensen, T., Stracke, R., Viehöver, P. & Weisshaar, B. (2016). A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. PLoS ONE, 11(10): e0164321. Public Library of Science. doi:10.1371/journal.pone.0164321.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
 
[2]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778 OA
Stracke, R., Holtgräwe, D., Schneider, J., Pucker, B., Rosleff Sörensen, T. & Weisshaar, B. (2014). Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ). BMC Plant Biology, 14(1): 249. Springer Science + Business Media. doi:10.1186/s12870-014-0249-8.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[1]
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2905012 OA
Fust, A., Hollmann, B., Pucker, B., Wollborn, D., Tiemann, J., Droste, J., Brosda, S., Blunk, S., Riedl, S. & Bleckwehl, T. (2014). The Transformers. From Carbon Dioxide to Biofuel. Gehalten auf der International Genetically Engineered Machine Competition (IGEM) 2014. doi:10.13140/RG.2.2.30504.98566.
PUB | PDF | DOI
 

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