62 Publikationen
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2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2981194Feng, T., Pucker, B., Kuang, T., Song, B., Yang, Y., Lin, N., Zhang, H., Moore, M.J., Brockington, S.F., Wang, Q., Deng, T., Wang, H., Sun, H.: The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine adaptation. Communications Biology . 6, : 706 (2023).PUB | DOI | WoS | PubMed | Europe PMC | CNGBdb Project
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965468Rajput, R., Tyagi, S., Naik, J., Pucker, B., Stracke, R., Pandey, A.: The R2R3-MYB gene family in Cicer arietinum: genome-wide identification and expression analysis leads to functional characterization of proanthocyanidin biosynthesis regulators in the seed coat. Planta. 256, : 67 (2022).PUB | DOI | WoS | PubMed | Europe PMC
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2022 | Datenpublikation | PUB-ID: 2963492Pucker, B., Schilbert, H., Viehöver, P., Weisshaar, B., Holtgräwe, D.: Supplementary material related to MBS analysis of seed quality parameters in Brassica napus. Bielefeld University (2022).PUB | Dateien verfügbar | DOI
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945592Pellegrinelli, V., Rodriguez-Cuenca, S., Rouault, C., Schilbert, H., Virtue, S., Moreno-Navarrete, J.M., Bidault, G., Borrego, M. del C.V., Dias, A.R., Pucker, B., Dale, M., Campbell, M., Carobbio, S., Aron-Wisnewsky, J., Mora, S., Masiero, M., Emmanouilidou, A., Mukhopadhyay, S., Dougan, G., Hoed, M. den, Loos, R., Fernández-Real, J.M., Chiarugi, D., Clément, K., Vidal-Puig, A.: Dysregulation of macrophage PEPD in obesity determines adipose tissue fibro-inflammation and insulin resistance. Nature Metabolism. 4, 476-494 (2022).PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2021 | Datenpublikation | PUB-ID: 2956654Schilbert, H., Kleinbölting, N., Weisshaar, B., Pucker, B.: Arabidopsis thaliana methylation pattern analysis based on ONT sequence reads. Bielefeld University (2021).PUB | Dateien verfügbar | DOI
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952434Pucker, B., Kleinbölting, N., Weisshaar, B.: Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis. BMC Genomics. 22, : 599 (2021).PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943037Sielemann, K., Weisshaar, B., Pucker, B.: Reference-based QUantification Of gene Dispensability (QUOD). Plant Methods. 17, : 18 (2021).PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2952659Naik, J., Rajput, R., Pucker, B., Stracke, R., Pandey, A.: The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula. Plant Molecular Biology. 106, 157-172 (2021).PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955954Pucker, B., Singh, H.B., Kumari, M., Khan, M.I., Brockington, S.F.: The report of anthocyanins in the betalain-pigmented genus Hylocereus is not well evidenced and is not a strong basis to refute the mutual exclusion paradigm. BMC Plant Biology. 21, : 297 (2021).PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2021 | Datenpublikation | PUB-ID: 2956788Pucker, B., Brockington, S.: Pitaya transcriptome assemblies and investigation of transcript abundances II. Bielefeld University (2021).PUB | Dateien verfügbar | DOI
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955558Montero, H., Lee, T., Pucker, B., Ferreras-Garrucho, G., Oldroyd, G., Brockington, S.F., Miyao, A., Paszkowski, U.: A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage. Proceedings of the National Academy of Sciences. 118, : e2105281118 (2021).PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938807Busche, M., Pucker, B., Viehöver, P., Weisshaar, B., Stracke, R.: Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2. G3: Genes|Genomes|Genetics. 10, 37-42 (2020).PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655Holtgräwe, D., Rosleff Soerensen, T., Hausmann, L., Pucker, B., Viehöver, P., Töpfer, R., Weisshaar, B.: A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping. Frontiers in Plant Science. 11, : 156 (2020).PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
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2020 | Datenpublikation | PUB-ID: 2942069Schilbert, H., Rempel, A., Pucker, B.: Gold standard of Nd1 vs TAIR10 sequence variants. Bielefeld University (2020).PUB | Dateien verfügbar | DOI
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341Schilbert, H., Rempel, A., Pucker, B.: Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data. Plants. 9, : 439 (2020).PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2020 | Datenpublikation | PUB-ID: 2946079Sielemann, K., Weisshaar, B., Pucker, B.: Reference-based QUantification Of gene Dispensability (QUOD) - test dataset. Bielefeld University (2020).PUB | Dateien verfügbar | DOI
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935311Frey, K., Pucker, B.: Animal, fungi, and plant genome sequences harbour different non-canonical splice sites. Cells. 9, : 458 (2020).PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2020 | Datenpublikation | PUB-ID: 2946374Pucker, B., Brockington, S.: Pitaya transcriptome assemblies and investigation of transcript abundances. Bielefeld University (2020).PUB | Dateien verfügbar | DOI
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946440Pucker, B., Pandey, A., Weisshaar, B., Stracke, R.: The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns. PLoS One. 15, : e0239275 (2020).PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948720Pucker, B., Schwandner, A., Becker, S., Hausmann, L., Viehöver, P., Töpfer, R., Weisshaar, B., Holtgräwe, D.: RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile. Plants. 9, : 1548 (2020).PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946066Sielemann, K., Hafner, A., Pucker, B.: The reuse of public datasets in the life sciences: potential risks and rewards. PeerJ. 8, : e9954 (2020).PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669Siadjeu, C., Pucker, B., Viehöver, P., Albach, D.C., Weisshaar, B.: High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing. Genes. 11, : 274 (2020).PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
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2020 | Datenpublikation | PUB-ID: 2941469Pucker, B., Siadjeu, C., Viehöver, P., Albach, D., Weisshaar, B.: Dioscorea dumetorum genome sequence v1.0. Bielefeld University (2020).PUB | Dateien verfügbar | DOI
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2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2946565Xu, B., Taylor, L., Pucker, B., Feng, T., Glover, B.J., Brockington, S.F.: The land plant‐specific MIXTA‐MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of land. New Phytologist. : nph.16997 (2020).PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944597Pucker, B., Reiher, F., Schilbert, H.: Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tiglium. Plants. 9, 1103 (2020).PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943062Choi, J., Lee, T., Cho, J., Servante, E.K., Pucker, B., Summers, W., Bowden, S., Rahimi, M., An, K., An, G., Bouwmeester, H.J., Wallington, E.J., Oldroyd, G., Paszkowski, U.: The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice. Nature Communications. 11, : 2114 (2020).PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Datenpublikation | PUB-ID: 2941041Pucker, B., Feng, T., Brockington, S.: Next generation sequencing to investigate genomic diversity in Caryophyllales - Kewa caespitosa. Bielefeld University (2020).PUB | Dateien verfügbar | DOI
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2020 | Datenpublikation | PUB-ID: 2941045Pucker, B., Feng, T., Brockington, S.: Next generation sequencing to investigate genomic diversity in Caryophyllales - Pharnaceum exiguum. Bielefeld University (2020).PUB | Dateien verfügbar | DOI
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2020 | Datenpublikation | PUB-ID: 2941043Pucker, B., Feng, T., Brockington, S.: Next generation sequencing to investigate genomic diversity in Caryophyllales - Macarthuria australis. Bielefeld University (2020).PUB | Dateien verfügbar | DOI
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2020 | Datenpublikation | PUB-ID: 2941047Pucker, B.: Arabidopsis thaliana Nd-1 Illumina short reads. Bielefeld University (2020).PUB | Dateien verfügbar | DOI
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2019 | Preprint | Veröffentlicht | PUB-ID: 2934778Baasner, J.-S., Howard, D., Pucker, B.: Influence of neighboring small sequence variants on functional impact prediction. bioRxiv. (2019).PUB | PDF | Download (ext.) | Preprint
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2019 | Datenpublikation | PUB-ID: 2937972Pucker, B., Busche, M., Viehöver, P., Weisshaar, B., Stracke, R.: Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang. Bielefeld University (2019).PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2936278Pucker, B., Busche, M., Viehöver, P., Weisshaar, B., Stracke, R.: Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang. Bielefeld University (2019).PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2938180Holtgräwe, D., Pucker, B., Rosleff Sörensen, T., Weisshaar, B.: Heterozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University (2019).PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2938178Holtgräwe, D., Pucker, B., Rosleff Sörensen, T., Weisshaar, B.: Homozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University (2019).PUB | Dateien verfügbar | DOI
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938013Pucker, B., Schilbert, H.: Genomics and Transcriptomics Advance in Plant Sciences. In: Singh, S.P., Upadhyay, S.K., Pandey, A., and Kumar, S. (eds.) Molecular Approaches in Plant Biology and Environmental Challenges. Energy, Environment, and Sustainability. p. 419-448. Springer, Singapore (2019).PUB | PDF | DOI
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2019 | Datenpublikation | PUB-ID: 2938185Holtgräwe, D., Pucker, B., Rosleff Sörensen, T., Weisshaar, B.: Description and mapping positions of BoeWGS1.0 contigs. Bielefeld University (2019).PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2937697Pucker, B., Busche, M., Viehöver, P., Weisshaar, B., Stracke, R.: Genome assemblies of Musa acuminata Dwarf Cavendish. Bielefeld University (2019).PUB | Dateien verfügbar | DOI
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936783Sheehan, H., Feng, T., Walker‐Hale, N., Lopez‐Nieves, S., Pucker, B., Guo, R., Yim, W.C., Badgami, R., Timoneda, A., Zhao, L., Tiley, H., Copetti, D., Sanderson, M.J., Cushman, J.C., Moore, M.J., Smith, S.A., Brockington, S.F.: Evolution of L‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales . New Phytologist. 227, : 914-929 (2019).PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698Pucker, B., Holtgräwe, D., Stadermann, K.B., Frey, K., Huettel, B., Reinhardt, R., Weisshaar, B.: Chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set. PLoS One. 14, : e0216233 (2019).PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | GenBank
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2019 | Datenpublikation | PUB-ID: 2949309Pucker, B., Holtgräwe, D., Stadermann, K.B., Weisshaar, B.: Chromosome-level Assembly Reveals the Niederzenz (Nd-1) Genome Structure and Gene Set. Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben (2019).PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2934220Pucker, B., Frey, K.: RNA-Seq read coverage depth of splice sites in fungi. Bielefeld University (2019).PUB | Dateien verfügbar | DOI
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2019 | Datenpublikation | PUB-ID: 2934226Pucker, B., Frey, K.: RNA-Seq read coverage depth of splice sites in animals. Bielefeld University (2019).PUB | Dateien verfügbar | DOI
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935844Pucker, B., Schilbert, H., Schumacher, S.F.: Integrating Molecular Biology and Bioinformatics Education. Journal of Integrative Bioinformatics. 16, : 20190005 (2019).PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135Pucker, B., Rückert, C., Stracke, R., Viehöver, P., Kalinowski, J., Weisshaar, B.: Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome. Genes. 10, : 671 (2019).PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079Timoneda, A., Feng, T., Sheehan, H., Walker‐Hale, N., Pucker, B., Lopez‐Nieves, S., Guo, R., Brockington, S.: The evolution of betalain biosynthesis in Caryophyllales. New Phytologist. 224, 71-85 (2019).PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2019 | Preprint | Veröffentlicht | PUB-ID: 2935737Pucker, B., Feng, T., Brockington, S.F.: Next generation sequencing to investigate genomic diversity in Caryophyllales. bioRxiv. (2019).PUB | PDF | Download (ext.) | Preprint
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2019 | Preprint | Veröffentlicht | PUB-ID: 2934975Pucker, B.: Mapping-based genome size estimation. bioRxiv. (2019).PUB | PDF | Download (ext.) | Preprint
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296Whitford, C.M., Dymek, S., Kerkhoff, D., März, C., Schmidt, O., Edich, M., Droste, J., Pucker, B., Rückert, C., Kalinowski, J.: Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications. Journal of Biological Engineering. 12, : 13 (2018).PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931064Brinkrolf, C., Henke, N.A., Ochel, L., Pucker, B., Kruse, O., Lutter, P.: Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA. Journal of Integrative Bioinformatics. 15, : 20180018 (2018).PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2018 | Datenpublikation | PUB-ID: 2931315Pucker, B.: RNA-Seq read coverage depth of splice sites in plants. Bielefeld University (2018).PUB | Dateien verfügbar | DOI
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870Pucker, B., Brockington, S.F.: Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes. BMC Genomics. 19, : 980 (2018).PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2018 | Diskussionspapier | Veröffentlicht | PUB-ID: 2920633Friedrich, A., Pucker, B.: Peer-review as a teaching method. Working Paper der AG Forschendes Lernen in der dghd, 2, 2018. Carl von Ossietzky Universität Oldenburg (2018).PUB | PDF | Download (ext.)
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2018 | Preprint | Veröffentlicht | PUB-ID: 2931225Schilbert, H., Pellegrinelli, V., Rodriguez-Cuenca, S., Vidal-Puig, A., Pucker, B.: Harnessing natural diversity to identify key amino acid residues in prolidase. bioRxiv. (2018).PUB | Download (ext.) | Preprint
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026Haak, M., Vinke, S., Keller, W., Droste, J., Rückert, C., Kalinowski, J., Pucker, B.: High Quality de Novo Transcriptome Assembly of Croton tiglium. Frontiers in Molecular Biosciences. 5, : 62 (2018).PUB | PDF | DOI | Download (ext.)
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2017 | Datenpublikation | PUB-ID: 2930821Karsten, L., Bergen, D., Drake, C., Dymek, S., Edich, M., Haak, M., Kerkhoff, D., Kerkhoff, Y., Liebers, M., März, C., Schlüter, L., Schmidt, O., Vinke, S., M. Whitford, C., Pucker, B., Droste, J., Rückert, C., Müller, K., Kalinowski, J.: Expanding The Genetic Code. Bielefeld University (2017).PUB | Dateien verfügbar | DOI
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524Pucker, B., Holtgräwe, D., Weisshaar, B.: Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence. BMC Research Notes. 10, : 667 (2017).PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462Alkhateeb, R., Rückert, C., Rupp, O., Pucker, B., Hublik, G., Wibberg, D., Niehaus, K., Pühler, A., Vorhölter, F.-J.: Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data. Journal of Biotechnology. 253, 55-61 (2017).PUB | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905844Pucker, B., Holtgräwe, D., Rosleff Sörensen, T., Stracke, R., Viehöver, P., Weisshaar, B.: A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. PLoS One. 11, : e0164321 (2016).PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778Stracke, R., Holtgräwe, D., Schneider, J., Pucker, B., Rosleff Sörensen, T., Weisshaar, B.: Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ). BMC Plant Biology. 14, : 249 (2014).PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2905012Fust, A., Hollmann, B., Pucker, B., Wollborn, D., Tiemann, J., Droste, J., Brosda, S., Blunk, S., Riedl, S., Bleckwehl, T.: The Transformers. From Carbon Dioxide to Biofuel. Presented at the International Genetically Engineered Machine Competition (IGEM) 2014, Boston, Mass., USA (2014).PUB | PDF | DOI