62 Publikationen
-
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2981194The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine adaptationPUB | DOI | WoS | PubMed | Europe PMC | CNGBdb Project
Feng T, Pucker B, Kuang T, Song B, Yang Y, Lin N, Zhang H, Moore MJ, Brockington SF, Wang Q, Deng T, et al. (2023)
Communications Biology 6(1): 706. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965468The R2R3-MYB gene family in Cicer arietinum: genome-wide identification and expression analysis leads to functional characterization of proanthocyanidin biosynthesis regulators in the seed coatPUB | DOI | WoS | PubMed | Europe PMC
Rajput R, Tyagi S, Naik J, Pucker B, Stracke R, Pandey A (2022)
Planta 256(4): 67. -
2022 | Datenpublikation | PUB-ID: 2963492Supplementary material related to MBS analysis of seed quality parameters in Brassica napusPUB | Dateien verfügbar | DOI
Pucker B, Schilbert H, Viehöver P, Weisshaar B, Holtgräwe D (2022)
Bielefeld University. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945592Dysregulation of macrophage PEPD in obesity determines adipose tissue fibro-inflammation and insulin resistancePUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Pellegrinelli V, Rodriguez-Cuenca S, Rouault C, Schilbert H, Virtue S, Moreno-Navarrete JM, Bidault G, Borrego M del CV, Dias AR, Pucker B, Dale M, et al. (2022)
Nature Metabolism 4(4): 476-494. -
2021 | Datenpublikation | PUB-ID: 2956654Arabidopsis thaliana methylation pattern analysis based on ONT sequence readsPUB | Dateien verfügbar | DOI
Schilbert H, Kleinbölting N, Weisshaar B, Pucker B (2021)
Bielefeld University. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952434Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesisPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
Pucker B, Kleinbölting N, Weisshaar B (2021)
BMC Genomics 22: 599. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943037Reference-based QUantification Of gene Dispensability (QUOD)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Sielemann K, Weisshaar B, Pucker B (2021)
Plant Methods 17(1): 18. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2952659The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatulaPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Naik J, Rajput R, Pucker B, Stracke R, Pandey A (2021)
Plant Molecular Biology 106(1-2): 157-172. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955954The report of anthocyanins in the betalain-pigmented genus Hylocereus is not well evidenced and is not a strong basis to refute the mutual exclusion paradigmPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Pucker B, Singh HB, Kumari M, Khan MI, Brockington SF (2021)
BMC Plant Biology 21(1): 297. -
2021 | Datenpublikation | PUB-ID: 2956788Pitaya transcriptome assemblies and investigation of transcript abundances IIPUB | Dateien verfügbar | DOI
Pucker B, Brockington S (2021)
Bielefeld University. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955558A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineagePUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Montero H, Lee T, Pucker B, Ferreras-Garrucho G, Oldroyd G, Brockington SF, Miyao A, Paszkowski U (2021)
Proceedings of the National Academy of Sciences 118(25): e2105281118. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938807Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
Busche M, Pucker B, Viehöver P, Weisshaar B, Stracke R (2020)
G3: Genes|Genomes|Genetics 10(1): 37-42. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted MappingPUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
Holtgräwe D, Rosleff Soerensen T, Hausmann L, Pucker B, Viehöver P, Töpfer R, Weisshaar B (2020)
Frontiers in Plant Science 11: 156. -
2020 | Datenpublikation | PUB-ID: 2942069Gold standard of Nd1 vs TAIR10 sequence variantsPUB | Dateien verfügbar | DOI
Schilbert H, Rempel A, Pucker B (2020)
Bielefeld University. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942341Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS DataPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Schilbert H, Rempel A, Pucker B (2020)
Plants 9(4): 439. -
2020 | Datenpublikation | PUB-ID: 2946079Reference-based QUantification Of gene Dispensability (QUOD) - test datasetPUB | Dateien verfügbar | DOI
Sielemann K, Weisshaar B, Pucker B (2020)
Bielefeld University. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935311Animal, fungi, and plant genome sequences harbour different non-canonical splice sitesPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Frey K, Pucker B (2020)
Cells 9(2): 458. -
2020 | Datenpublikation | PUB-ID: 2946374Pitaya transcriptome assemblies and investigation of transcript abundancesPUB | Dateien verfügbar | DOI
Pucker B, Brockington S (2020)
Bielefeld University. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946440The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patternsPUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
Pucker B, Pandey A, Weisshaar B, Stracke R (2020)
PLoS One 15(10): e0239275. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948720RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature ProfilePUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
Pucker B, Schwandner A, Becker S, Hausmann L, Viehöver P, Töpfer R, Weisshaar B, Holtgräwe D (2020)
Plants 9(11): 1548. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946066The reuse of public datasets in the life sciences: potential risks and rewardsPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Sielemann K, Hafner A, Pucker B (2020)
PeerJ 8: e9954. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941669High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read SequencingPUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
Siadjeu C, Pucker B, Viehöver P, Albach DC, Weisshaar B (2020)
Genes 11(3): 274. -
2020 | Datenpublikation | PUB-ID: 2941469Dioscorea dumetorum genome sequence v1.0PUB | Dateien verfügbar | DOI
Pucker B, Siadjeu C, Viehöver P, Albach D, Weisshaar B (2020)
Bielefeld University. -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2946565The land plant‐specific MIXTA‐MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of landPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Xu B, Taylor L, Pucker B, Feng T, Glover BJ, Brockington SF (2020)
New Phytologist: nph.16997. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944597Automatic identification of players in the flavonoid biosynthesis with application on the biomedicinal plant Croton tigliumPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Pucker B, Reiher F, Schilbert H (2020)
Plants 9(9): 1103. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943062The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in ricePUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Choi J, Lee T, Cho J, Servante EK, Pucker B, Summers W, Bowden S, Rahimi M, An K, An G, Bouwmeester HJ, et al. (2020)
Nature Communications 11(1): 2114. -
2020 | Datenpublikation | PUB-ID: 2941041Next generation sequencing to investigate genomic diversity in Caryophyllales - Kewa caespitosaPUB | Dateien verfügbar | DOI
Pucker B, Feng T, Brockington S (2020)
Bielefeld University. -
2020 | Datenpublikation | PUB-ID: 2941045Next generation sequencing to investigate genomic diversity in Caryophyllales - Pharnaceum exiguumPUB | Dateien verfügbar | DOI
Pucker B, Feng T, Brockington S (2020)
Bielefeld University. -
2020 | Datenpublikation | PUB-ID: 2941043Next generation sequencing to investigate genomic diversity in Caryophyllales - Macarthuria australisPUB | Dateien verfügbar | DOI
Pucker B, Feng T, Brockington S (2020)
Bielefeld University. -
-
2019 | Preprint | Veröffentlicht | PUB-ID: 2934778Influence of neighboring small sequence variants on functional impact predictionPUB | PDF | Download (ext.) | Preprint
Baasner J-S, Howard D, Pucker B (2019)
bioRxiv. -
2019 | Datenpublikation | PUB-ID: 2937972Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH PahangPUB | Dateien verfügbar | DOI
Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)
Bielefeld University. -
2019 | Datenpublikation | PUB-ID: 2936278Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH PahangPUB | Dateien verfügbar | DOI
Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)
Bielefeld University. -
2019 | Datenpublikation | PUB-ID: 2938180Heterozygous SNVs between BoeWGS1.0 and PN40024PUB | Dateien verfügbar | DOI
Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)
Bielefeld University. -
2019 | Datenpublikation | PUB-ID: 2938178Homozygous SNVs between BoeWGS1.0 and PN40024PUB | Dateien verfügbar | DOI
Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)
Bielefeld University. -
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2938013Genomics and Transcriptomics Advance in Plant SciencesPUB | PDF | DOI
Pucker B, Schilbert H (2019)
In: Molecular Approaches in Plant Biology and Environmental Challenges. Singh SP, Upadhyay SK, Pandey A, Kumar S (Eds); Energy, Environment, and Sustainability. Singapore: Springer: 419-448. -
2019 | Datenpublikation | PUB-ID: 2938185Description and mapping positions of BoeWGS1.0 contigsPUB | Dateien verfügbar | DOI
Holtgräwe D, Pucker B, Rosleff Sörensen T, Weisshaar B (2019)
Bielefeld University. -
2019 | Datenpublikation | PUB-ID: 2937697Genome assemblies of Musa acuminata Dwarf CavendishPUB | Dateien verfügbar | DOI
Pucker B, Busche M, Viehöver P, Weisshaar B, Stracke R (2019)
Bielefeld University. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936783Evolution of L‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in CaryophyllalesPUB | DOI | WoS | PubMed | Europe PMC
Sheehan H, Feng T, Walker‐Hale N, Lopez‐Nieves S, Pucker B, Guo R, Yim WC, Badgami R, Timoneda A, Zhao L, Tiley H, et al. (2019)
New Phytologist 227(3): 914-929. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698Chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene setPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | GenBank
Pucker B, Holtgräwe D, Stadermann KB, Frey K, Huettel B, Reinhardt R, Weisshaar B (2019)
PLoS One 14(5): e0216233. -
2019 | Datenpublikation | PUB-ID: 2949309Chromosome-level Assembly Reveals the Niederzenz (Nd-1) Genome Structure and Gene SetPUB | Dateien verfügbar | DOI
Pucker B, Holtgräwe D, Stadermann KB, Weisshaar B (2019)
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben. -
2019 | Bielefelder E-Dissertation | PUB-ID: 2935794De novo Nd-1 genome assembly reveals genomic diversity of Arabidopsis thaliana and facilitates genome-wide non-canonical splice site analysis across plant speciesPUB | PDF | DOI
Pucker B (2019)
Bielefeld: Universität Bielefeld. -
-
2019 | Datenpublikation | PUB-ID: 2934226RNA-Seq read coverage depth of splice sites in animalsPUB | Dateien verfügbar | DOI
Pucker B, Frey K (2019)
Bielefeld University. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935844Integrating Molecular Biology and Bioinformatics EducationPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Pucker B, Schilbert H, Schumacher SF (2019)
Journal of Integrative Bioinformatics 16(3): 20190005. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana GenomePUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
Pucker B, Rückert C, Stracke R, Viehöver P, Kalinowski J, Weisshaar B (2019)
Genes 10(9): 671. -
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936079The evolution of betalain biosynthesis in CaryophyllalesPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Timoneda A, Feng T, Sheehan H, Walker‐Hale N, Pucker B, Lopez‐Nieves S, Guo R, Brockington S (2019)
New Phytologist 224(1): 71-85. -
2019 | Preprint | Veröffentlicht | PUB-ID: 2935737Next generation sequencing to investigate genomic diversity in CaryophyllalesPUB | PDF | Download (ext.) | Preprint
Pucker B, Feng T, Brockington SF (2019)
bioRxiv. -
-
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applicationsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Whitford CM, Dymek S, Kerkhoff D, März C, Schmidt O, Edich M, Droste J, Pucker B, Rückert C, Kalinowski J (2018)
Journal of Biological Engineering 12(1): 13. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931064Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESAPUB | PDF | DOI | WoS | PubMed | Europe PMC
Brinkrolf C, Henke NA, Ochel L, Pucker B, Kruse O, Lutter P (2018)
Journal of Integrative Bioinformatics 15(3): 20180018. -
-
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932870Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomesPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Pucker B, Brockington SF (2018)
BMC Genomics 19(1): 980. -
2018 | Diskussionspapier | Veröffentlicht | PUB-ID: 2920633Peer-review as a teaching methodPUB | PDF | Download (ext.)
Friedrich A, Pucker B (2018) Working Paper der AG Forschendes Lernen in der dghd; 2, 2018.
Carl von Ossietzky Universität Oldenburg. -
2018 | Preprint | Veröffentlicht | PUB-ID: 2931225Harnessing natural diversity to identify key amino acid residues in prolidasePUB | Download (ext.) | Preprint
Schilbert H, Pellegrinelli V, Rodriguez-Cuenca S, Vidal-Puig A, Pucker B (2018)
bioRxiv. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026High Quality de Novo Transcriptome Assembly of Croton tigliumPUB | PDF | DOI | Download (ext.)
Haak M, Vinke S, Keller W, Droste J, Rückert C, Kalinowski J, Pucker B (2018)
Frontiers in Molecular Biosciences 5: 62. -
2017 | Datenpublikation | PUB-ID: 2930821Expanding The Genetic CodePUB | Dateien verfügbar | DOI
Karsten L, Bergen D, Drake C, Dymek S, Edich M, Haak M, Kerkhoff D, Kerkhoff Y, Liebers M, März C, Schlüter L, et al. (2017)
Bielefeld University. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequencePUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
Pucker B, Holtgräwe D, Weisshaar B (2017)
BMC Research Notes 10(1): 667. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence dataPUB | DOI | WoS | PubMed | Europe PMC
Alkhateeb R, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter F-J (2017)
Journal of Biotechnology 253: 55-61. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905844A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong SyntenyPUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
Pucker B, Holtgräwe D, Rosleff Sörensen T, Stracke R, Viehöver P, Weisshaar B (2016)
PLoS One 11(10): e0164321. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris )PUB | PDF | DOI | WoS | PubMed | Europe PMC
Stracke R, Holtgräwe D, Schneider J, Pucker B, Rosleff Sörensen T, Weisshaar B (2014)
BMC Plant Biology 14(1): 249. -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2905012The Transformers. From Carbon Dioxide to BiofuelPUB | PDF | DOI
Fust A, Hollmann B, Pucker B, Wollborn D, Tiemann J, Droste J, Brosda S, Blunk S, Riedl S, Bleckwehl T (2014)
Presented at the International Genetically Engineered Machine Competition (IGEM) 2014, Boston, Mass., USA.