RNA-Seq read coverage depth of splice sites in plants

Pucker B (2018)
Bielefeld University.

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Abstract / Bemerkung
RNA-Seq reads of 35 plant species were mapped to the corresponding genome sequence. The coverage around splice sites within the protein coding sequence of genes is listed. Each line represents one intron within a protein coding sequence. Species name and gene ID are provided in the first two columns. Next, the number of reads mapped to the very 3' end of the upstream exon, 5' and 3' ends of the intron, and the very 5' end of the downstream exon are given. The last two columns provide the terminal dinucleotide sequences of an intron. Analysed species: Arabidopsis lyrata, Arabidopsis thaliana, Beta vulgaris, Brachypodium distachyon, Brassica napus, Brassica oleracea, Brassica rapa, Camelina sativa, Cicer arietinum, Citrus sinensis, Durio zibethinus, Eucalyptus grandis, Eutrema salsugineum, Fragaria vesca, Glycine max, Gossypium raimondii, Jatropha curcas, Lupinus angustifolius, Malus domestica, Manihot esculenta, Marchantia polymorpha, Medicago truncatula, Monoraphidium neglectum, Morus notabilis, Musa acuminata, Oryza brachyantha, Oryza sativa, Phaseolus vulgaris, Physcomitrella patens, Populus euphratica, Populus trichocarpa, Setaria italica, Vitis vinifera, Zea mays, Ziziphus jujuba
Erscheinungsjahr
2018
Page URI
https://pub.uni-bielefeld.de/record/2931315

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Pucker B. RNA-Seq read coverage depth of splice sites in plants. Bielefeld University; 2018.
Pucker, B. (2018). RNA-Seq read coverage depth of splice sites in plants. Bielefeld University. doi:10.4119/unibi/2931315
Pucker, B. (2018). RNA-Seq read coverage depth of splice sites in plants. Bielefeld University.
Pucker, B., 2018. RNA-Seq read coverage depth of splice sites in plants, Bielefeld University.
B. Pucker, RNA-Seq read coverage depth of splice sites in plants, Bielefeld University, 2018.
Pucker, B.: RNA-Seq read coverage depth of splice sites in plants. Bielefeld University (2018).
Pucker, Boas. RNA-Seq read coverage depth of splice sites in plants. Bielefeld University, 2018.
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