Pitaya transcriptome assemblies and investigation of transcript abundances II

Pucker B, Brockington S (2021)
Bielefeld University.

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Pucker, BoasUniBi ; Brockington, Samuel
Abstract / Bemerkung
The RNA-Seq dataset PRJNA627818 was re-analysed to check findings reported in the corresponding publication. RNA-Seq reads were trimmed with Trimmomatic (Bolger et al., 2014) and assembled with Trinity (Grabher et al., 2011). Encoded peptide sequences were predicted and functionally annotated using a previously developed approach (Haak et al., 2018). kallisto (Bray et al., 2016) was applied to estimate the abundance of transcripts based on transcriptome assemblies of three pitaya species and the raw RNA-Seq reads. Please see our corresponding manuscript for details.
Stichworte
RNA-Seq; pitaya; betalains; anthocyanins
Erscheinungsjahr
2021
Page URI
https://pub.uni-bielefeld.de/record/2956788

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Pucker B, Brockington S. Pitaya transcriptome assemblies and investigation of transcript abundances II. Bielefeld University; 2021.
Pucker, B., & Brockington, S. (2021). Pitaya transcriptome assemblies and investigation of transcript abundances II. Bielefeld University. https://doi.org/10.4119/unibi/2956788
Pucker, B., and Brockington, S. (2021). Pitaya transcriptome assemblies and investigation of transcript abundances II. Bielefeld University.
Pucker, B., & Brockington, S., 2021. Pitaya transcriptome assemblies and investigation of transcript abundances II, Bielefeld University.
B. Pucker and S. Brockington, Pitaya transcriptome assemblies and investigation of transcript abundances II, Bielefeld University, 2021.
Pucker, B., Brockington, S.: Pitaya transcriptome assemblies and investigation of transcript abundances II. Bielefeld University (2021).
Pucker, Boas, and Brockington, Samuel. Pitaya transcriptome assemblies and investigation of transcript abundances II. Bielefeld University, 2021.
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2021-08-17T12:18:34Z
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