PUB - Publikationen an der Universität Bielefeld

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• [42]
  

  2020 | Bielefelder E-Dissertation | PUB-ID: 2940338

  The MGX framework for microbial community analysis
  Jaenicke S (2020)
  Bielefeld: Universität Bielefeld.

  PUB | PDF | DOI
   
• [41]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012

  Flexible metagenome analysis using the MGX framework
  Jaenicke S, Albaum S, Blumenkamp P, Linke B, Stoye J, Goesmann A (2018)
  Microbiome 6(1): 76.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [40]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556

  Bioinformatics for NGS-based metagenomics and the application to biogas research
  Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum S, Schlüter A, Goesmann A, Sczyrba A, et al. (2017)
  Journal of Biotechnology 261(SI): 10-23.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [39]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260

  Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates
  Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, et al. (2016)
  Biotechnology for Biofuels 9(1): 171.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [38]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691

  Genomics of high molecular weight plasmids isolated from an on-farm biopurification system
  Martini MC, Wibberg D, Lozano M, Torres Tejerizo G, Albicoro FJ, Jaenicke S, van Elsas JD, Petroni A, Garcillan-Barcia MP, de la Cruz F, Schlüter A, et al. (2016)
  Scientific Reports 6(1): 28284.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [37]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234

  An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant
  Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
  Journal of Biotechnology 231: 268-279.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [36]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765190

  Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare
  Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
  Genome announcements 3(4): e00783-15.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [35]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765197

  Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise
  Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
  Genome announcements 3(4): e00784-15.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [34]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722382

  Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
  Stolze Y, Zakrzewski M, Maus I, Eikmeyer FG, Jaenicke S, Rottmann N, Siebner C, Pühler A, Schlüter A (2015)
  Biotechnology for Biofuels 8(1): 14.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [33]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605

  The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms
  Rupp O, Brinkrolf K, Buerth C, Kunigo M, Schneider J, Jaenicke S, Goesmann A, Pühler A, Jaeger K-E, Ernst JF (2015)
  Journal of Biotechnology 211: 20-30.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [32]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877

  Complete genome sequence of Streptomyces lividans TK24
  Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, et al. (2015)
  Journal of Biotechnology 199: 21-22.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [31]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719679

  The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean
  Vinardell JM, Acosta-Jurado S, Göttfert M, Zehner S, Becker A, Baena-Ropero I, Blom J, Crespo-Rivas JC, Goesmann A, Jaenicke S, Krol E, et al. (2015)
  Molecular Plant-Microbe Interactions 28(7): 811-824.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [30]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2692360

  Mycolic Acid Biosynthesis Genes in the Genome Sequence of Corynebacterium atypicum DSM 44849
  Tippelt A, Möllmann S, Albersmeier A, Jaenicke S, Rückert C, Tauch A (2014)
  Genome announcements 2(4).

  PUB | DOI | PubMed | Europe PMC
   
• [29]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732

  Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria
  Klippel B, Sahm K, Basner A, Wiebusch S, John P, Lorenz U, Peters A, Abe F, Takahashi K, Kaiser O, Goesmann A, et al. (2014)
  Extremophiles 18(5): 853-863.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [28]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557779

  Genome Sequence of Sinorhizobium meliloti Rm41
  Weidner S, Baumgarth B, Göttfert M, Jaenicke S, Pühler A, Schneiker-Bekel S, Serrania J, Szczepanowski R, Becker A (2013)
  Genome Announcements 1(1): e00013-12.

  PUB | DOI | PubMed | Europe PMC
   
• [27]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2582332

  Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis
  Guimarães LC, Soares SC, Albersmeier A, Blom J, Jaenicke S, Azevedo V, Soriano F, Tauch A, Trost E (2013)
  Genome announcements 1(3): e00264-13.

  PUB | DOI | PubMed | Europe PMC
   
• [26]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605193

  Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms
  Eikmeyer FG, Rademacher A, Hanreich A, Hennig M, Jaenicke S, Maus I, Wibberg D, Zakrzewski M, Pühler A, Klocke M, Schlüter A (2013)
  Biotechnology for Biofuels 6(1): 49.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309

  Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing
  Bolzan de Campos S, Youn J-W, Farina R, Jaenicke S, Jünemann S, Szczepanowski R, Beneduzi A, Vargas LK, Goesmann A, Wendisch VF, Passagilia L (2013)
  Microbial Ecology 65(3): 593-601.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [24]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460

  Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study
  Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, et al. (2013)
  PLoS medicine 10(2): e1001387.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [23]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080

  New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics
  Toepel J, Illmer-Kephalides M, Jaenicke S, Straube J, May P, Goesmann A, Kruse O (2013)
  Plant Biotechnology Journal 11(6): 717-733.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526

  Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation
  Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A (2013)
  Journal of Biotechnology 168(1): 62-63.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286

  Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
  Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, et al. (2013)
  Environmental Microbiology 15(1): 253-270.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160

  Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient
  Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A (2012)
  BMC Genomics 13(1): 141.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473849

  Genome Sequence of the Soybean Symbiont Sinorhizobium fredii HH103
  Weidner S, Becker A, Bonilla I, Jaenicke S, Lloret J, Margaret I, Pühler A, Ruiz-Sainz JE, Schneiker-Bekel S, Szczepanowski R, Vinardell JM, et al. (2012)
  Journal of Bacteriology 194(6): 1617-1618.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618

  Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing
  Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer FG, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A (2012)
  Journal of Biotechnology 158(4): 248-258.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347

  Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia
  Trost E, Blom J, de Castro Soares S, Huang I-H, Al-Dilaimi A, Schröder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, et al. (2012)
  Journal of bacteriology 194(12): 3199-3215.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002

  Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities
  Schneider J, Rupp O, Trost E, Jaenicke S, Passoth V, Goesmann A, Tauch A, Brinkrolf K (2012)
  FEMS Yeast Research 12(3): 382-386.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774

  Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10
  Schneider J, Andrea H, Blom J, Jaenicke S, Rückert C, Schorsch C, Szczepanowski R, Farwick M, Goesmann A, Pühler A, Schaffer S, et al. (2012)
  Eukaryotic Cell 11(12): 1582-1583.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530487

  Genome Sequence of the Filamentous Bacterium Fibrisoma limi BUZ 3(T)
  Filippini M, Qi W, Jaenicke S, Goesmann A, Smits THM, Bagheri HC (2012)
  Journal of Bacteriology 194(16): 4445.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298

  Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester
  Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, et al. (2012)
  Journal of Bacteriology 194(19): 5487-5488.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933

  Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties
  Dohrmann AB, Küting M, Jünemann S, Jaenicke S, Schlüter A, Tebbe CC (2012)
  The ISME journal 7(1): 37-49.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276

  Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing
  Jaenicke S, Ander C, Bekel T, Bisdorf R, Dröge M, Gartemann K-H, Jünemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, et al. (2011)
  PLoS ONE 6(1): e14519.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [10]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731

  Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid
  Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, et al. (2011)
  Journal of Biotechnology 155(1): 50-62.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371

  High-quality genome sequence of Pichia pastoris CBS7435
  Küberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Pühler A, et al. (2011)
  Journal of Biotechnology 154(4): 312-320.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445

  RAPYD - Rapid Annotation Platform for Yeast Data
  Schneider J, Blom J, Jaenicke S, Linke B, Brinkrolf K, Neuweger H, Tauch A, Goesmann A (2011)
  Journal of Biotechnology 155(1): 118-126.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [7]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730

  Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134
  Gonzalez JM, Pinhassi J, Fernández-Gómez B, Coll-Llado M, Gonzalez-Velazquez M, Puigbo P, Jaenicke S, Gomez-Consarnau L, Fernandez-Guerra A, Goesmann A, Pedros-Alio C (2011)
  Applied and Environmental Microbiology 77(24): 8676-8686.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751

  Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods
  Jaenicke S, Zakrzewski M, Jünemann S, Pühler A, Goesmann A, Schlüter A (2011)
  In: Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats. de Bruijn FJ (Ed); Hoboken, NJ, USA: Wiley-Blackwell: 403-414.

  PUB | DOI
   
• [5]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952

  Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
  Blom J, Jakobi T, Doppmeier D, Jaenicke S, Kalinowski J, Stoye J, Goesmann A (2011)
  Bioinformatics 27(10): 1351-1358.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439

  The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence
  Trost E, Ott L, Schneider J, Schröder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Alves Dorella F, Souza Rocha F, de Castro Soares S, et al. (2010)
  BMC Genomics 11(1): 728.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497

  A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
  Schlüter J-P, Reinkensmeier J, Daschkey S, Evguenieva-Hackenberg E, Janssen S, Jaenicke S, Becker JD, Giegerich R, Becker A (2010)
  BMC Genomics 11(1): 245.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [2]
  

  2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907

  Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions
  Mittard-Runte V, Bekel T, Blom J, Dondrup M, Henckel K, Jaenicke S, Krause L, Linke B, Neuweger H, Schneiker-Bekel S, Goesmann A (2010)
  In: Introduction to Marine Genomics (Advances in Marine Genomics). Cock JM, Tessmar-Raible K, Boyen C, Viard F (Eds); , 1. Netherlands: Springer Netherlands: 315-396.

  PUB | DOI
   
• [1]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644

  Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity
  Smits THM, Jaenicke S, Rezzonico F, Kamber T, Goesmann A, Frey JE, Duffy B (2010)
  BMC Genomics 11(1): 2.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC