42 Publikationen
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2020 | Bielefelder E-Dissertation | PUB-ID: 2940338The MGX framework for microbial community analysisPUB | PDF | DOI
Jaenicke, Sebastian, The MGX framework for microbial community analysis. (). Bielefeld, 2020 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012Flexible metagenome analysis using the MGX frameworkPUB | DOI | WoS | PubMed | Europe PMC
Jaenicke, Sebastian, Flexible metagenome analysis using the MGX framework. Microbiome 6 (1). , 2018 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556Bioinformatics for NGS-based metagenomics and the application to biogas researchPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Jünemann, Sebastian, Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology 261 (SI). , 2017 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolatesPUB | DOI | WoS | PubMed | Europe PMC
Maus, Irena, Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. Biotechnology for Biofuels 9 (1). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691Genomics of high molecular weight plasmids isolated from an on-farm biopurification systemPUB | DOI | WoS | PubMed | Europe PMC
Martini, Maria C., Genomics of high molecular weight plasmids isolated from an on-farm biopurification system. Scientific Reports 6 (1). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plantPUB | DOI | WoS | PubMed | Europe PMC
Ortseifen, Vera, An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology 231 (). , 2016 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765190Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden MarePUB | DOI | WoS | PubMed | Europe PMC
Rückert, Christian, Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare. Genome announcements 3 (4). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765197Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a TortoisePUB | DOI | WoS | PubMed | Europe PMC
Rückert, Christian, Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise. Genome announcements 3 (4). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722382Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditionsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Stolze, Yvonne, Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions. Biotechnology for Biofuels 8 (1). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphismsPUB | DOI | WoS | PubMed | Europe PMC
Rupp, Oliver, The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology 211 (). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877Complete genome sequence of Streptomyces lividans TK24PUB | DOI | WoS | PubMed | Europe PMC
Rückert, Christian, Complete genome sequence of Streptomyces lividans TK24. Journal of Biotechnology 199 (). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719679The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybeanPUB | DOI | WoS | PubMed | Europe PMC
Vinardell, JM, The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions 28 (7). , 2015 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2692360Mycolic Acid Biosynthesis Genes in the Genome Sequence of Corynebacterium atypicum DSM 44849PUB | DOI | PubMed | Europe PMC
Tippelt, Anna, Mycolic Acid Biosynthesis Genes in the Genome Sequence of Corynebacterium atypicum DSM 44849. Genome announcements 2 (4). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteriaPUB | DOI | WoS | PubMed | Europe PMC
Klippel, Barbara, Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles 18 (5). , 2014 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2582332Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted CystitisPUB | DOI | PubMed | Europe PMC
Guimarães, Luis C., Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis. Genome announcements 1 (3). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557779Genome Sequence of Sinorhizobium meliloti Rm41PUB | DOI | PubMed | Europe PMC
Weidner, Stefan, Genome Sequence of Sinorhizobium meliloti Rm41. Genome Announcements 1 (1). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605193Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganismsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Eikmeyer, Felix Gregor, Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms. Biotechnology for Biofuels 6 (1). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation SequencingPUB | DOI | WoS | PubMed | Europe PMC
Bolzan de Campos, Samanta, Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology 65 (3). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological StudyPUB | DOI | WoS | PubMed | Europe PMC
Roetzer, Andreas, Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study. PLoS medicine 10 (2). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomicsPUB | DOI | WoS | PubMed | Europe PMC
Toepel, Jörg, New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics. Plant Biotechnology Journal 11 (6). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradationPUB | DOI | WoS | PubMed | Europe PMC
Koeck, Daniela E., Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology 168 (1). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344PUB | DOI | WoS | PubMed | Europe PMC
Luque-Almagro, Víctor M, Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology 15 (1). , 2013 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patientPUB | PDF | DOI | WoS | PubMed | Europe PMC
Schröder, Jasmin, Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient. BMC Genomics 13 (1). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473849Genome Sequence of the Soybean Symbiont Sinorhizobium fredii HH103PUB | DOI | WoS | PubMed | Europe PMC
Weidner, Stefan, Genome Sequence of the Soybean Symbiont Sinorhizobium fredii HH103. Journal of Bacteriology 194 (6). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencingPUB | DOI | WoS | PubMed | Europe PMC
Zakrzewski, Martha, Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology 158 (4). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and PneumoniaPUB | DOI | WoS | PubMed | Europe PMC
Trost, Eva, Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia. Journal of bacteriology 194 (12). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activitiesPUB | DOI | WoS | PubMed | Europe PMC
Schneider, Jessica, Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research 12 (3). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10PUB | DOI | WoS | PubMed | Europe PMC
Schneider, Jessica, Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell 11 (12). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530487Genome Sequence of the Filamentous Bacterium Fibrisoma limi BUZ 3(T)PUB | DOI | WoS | PubMed | Europe PMC
Filippini, Manuela, Genome Sequence of the Filamentous Bacterium Fibrisoma limi BUZ 3(T). Journal of Bacteriology 194 (16). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge DigesterPUB | DOI | WoS | PubMed | Europe PMC
Maus, Irena, Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. Journal of Bacteriology 194 (19). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varietiesPUB | DOI | WoS | PubMed | Europe PMC
Dohrmann, Anja B, Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties. The ISME journal 7 (1). , 2012 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-PyrosequencingPUB | DOI | WoS | PubMed | Europe PMC
Jaenicke, Sebastian, Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE 6 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmidPUB | DOI | WoS | PubMed | Europe PMC
Wibberg, Daniel, Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology 155 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371High-quality genome sequence of Pichia pastoris CBS7435PUB | DOI | WoS | PubMed | Europe PMC
Küberl, Andreas, High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology 154 (4). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445RAPYD - Rapid Annotation Platform for Yeast DataPUB | DOI | WoS | PubMed | Europe PMC
Schneider, Jessica, RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology 155 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134PUB | DOI | WoS | PubMed | Europe PMC
Gonzalez, Jose M., Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134. Applied and Environmental Microbiology 77 (24). , 2011 -
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics MethodsPUB | DOI
Jaenicke, Sebastian, Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (). Hoboken, NJ, USA, 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programmingPUB | DOI | WoS | PubMed | Europe PMC
Blom, Jochen, Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 27 (10). , 2011 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulencePUB | DOI | WoS | PubMed | Europe PMC
Trost, Eva, The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics 11 (1). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium melilotiPUB | PDF | DOI | WoS | PubMed | Europe PMC
Schlüter, Jan-Philip, A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics 11 (1). , 2010 -
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907Practical Guide: Genomic Techniques and How to Apply Them to Marine QuestionsPUB | DOI
Mittard-Runte, Virginie, Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions. Introduction to Marine Genomics (Advances in Marine Genomics) 1 (). Netherlands, 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicityPUB | PDF | DOI | WoS | PubMed | Europe PMC
Smits, Theo H. M., Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics 11 (1). , 2010