The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean
Vinardell JM, Acosta-Jurado S, Göttfert M, Zehner S, Becker A, Baena-Ropero I, Blom J, Crespo-Rivas JC, Goesmann A, Jaenicke S, Krol E, et al. (2015)
Molecular Plant-Microbe Interactions 28(7): 811-824.
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Autor*in
Vinardell, JM;
Acosta-Jurado, S;
Göttfert, M;
Zehner, S;
Becker, A;
Baena-Ropero, I;
Blom, J;
Crespo-Rivas, JC;
Goesmann, A;
Jaenicke, SebastianUniBi;
Krol, E;
McIntosh, M
Alle
Alle
Einrichtung
Abstract / Bemerkung
Sinorhizobium fredii HH103 is a fast-growing rhizobial strain infecting a broad range of legumes including both American and Asiatic soybeans. In this work we present the sequencing and annotation of the HH103 genome (7.25 Mb), consisting of one chromosome and six plasmids and representing the structurally most complex sinorhizobial genome sequenced so far. Comparative genomic analyses of S. fredii HH103 with strains USDA257 and NGR234 showed that the core genome of these three strains contains 4212 genes (61.7% of the HH103 genes). Synteny plot analysis revealed that the much larger chromosome of USDA257 (6.48 Mb) is co-linear to the HH103 (4.3 Mb) and NGR324 chromosomes (3.9 Mb). An additional region of the USDA257 chromosome of about 2 Mb displays similarity to plasmid pSfHH103e. Remarkable differences exist between HH103 and NGR234 concerning nod genes, flavonoid effect on surface polysaccharide production, and quorum-sensing systems. Furthermore a number of protein secretion systems have been found. Two genes coding for putative type III-secreted effectors not previously described in S. fredii, nopI and gunA, have been located on the HH103 genome. These differences could be important to understand the different symbiotic behaviour of S. fredii strains HH103, USDA257, and NGR234 with soybean.
Erscheinungsjahr
2015
Zeitschriftentitel
Molecular Plant-Microbe Interactions
Band
28
Ausgabe
7
Seite(n)
811-824
ISSN
0894-0282
Page URI
https://pub.uni-bielefeld.de/record/2719679
Zitieren
Vinardell JM, Acosta-Jurado S, Göttfert M, et al. The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions. 2015;28(7):811-824.
Vinardell, J. M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., et al. (2015). The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions, 28(7), 811-824. doi:10.1094/mpmi-12-14-0397-fi
Vinardell, JM, Acosta-Jurado, S, Göttfert, M, Zehner, S, Becker, A, Baena-Ropero, I, Blom, J, et al. 2015. “The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean”. Molecular Plant-Microbe Interactions 28 (7): 811-824.
Vinardell, J. M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., Crespo-Rivas, J. C., Goesmann, A., Jaenicke, S., et al. (2015). The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions 28, 811-824.
Vinardell, J.M., et al., 2015. The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions, 28(7), p 811-824.
J.M. Vinardell, et al., “The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean”, Molecular Plant-Microbe Interactions, vol. 28, 2015, pp. 811-824.
Vinardell, J.M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., Crespo-Rivas, J.C., Goesmann, A., Jaenicke, S., Krol, E., McIntosh, M., Margaret, I., Pérez-Montaño, F., Schneiker-Bekel, S., Serrania, J., Szczepanowski, R., Buendia-Claveria, A.M., Lloret, J., Bonilla, I., Pühler, A., Ruiz-Sainz, J.E., Weidner, S.: The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions. 28, 811-824 (2015).
Vinardell, JM, Acosta-Jurado, S, Göttfert, M, Zehner, S, Becker, A, Baena-Ropero, I, Blom, J, Crespo-Rivas, JC, Goesmann, A, Jaenicke, Sebastian, Krol, E, McIntosh, M, Margaret, I, Pérez-Montaño, F, Schneiker-Bekel, Susanne, Serrania, J, Szczepanowski, R, Buendia-Claveria, AM, Lloret, J, Bonilla, I, Pühler, Alfred, Ruiz-Sainz, JE, and Weidner, Stefan. “The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean”. Molecular Plant-Microbe Interactions 28.7 (2015): 811-824.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
19 Zitationen in Europe PMC
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An apigenin-induced decrease in K-antigen production by Sinorhizobium sp. NGR234 is y4gM- and nodD1-dependent.
Simsek S, Ojanen-Reuhs T, Marie C, Reuhs BL., Carbohydr. Res. 344(15), 2009
PMID: 19679303
Simsek S, Ojanen-Reuhs T, Marie C, Reuhs BL., Carbohydr. Res. 344(15), 2009
PMID: 19679303
AUTHOR UNKNOWN, 0
Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies.
Sugawara M, Epstein B, Badgley BD, Unno T, Xu L, Reese J, Gyaneshwar P, Denny R, Mudge J, Bharti AK, Farmer AD, May GD, Woodward JE, Medigue C, Vallenet D, Lajus A, Rouy Z, Martinez-Vaz B, Tiffin P, Young ND, Sadowsky MJ., Genome Biol. 14(2), 2013
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Sugawara M, Epstein B, Badgley BD, Unno T, Xu L, Reese J, Gyaneshwar P, Denny R, Mudge J, Bharti AK, Farmer AD, May GD, Woodward JE, Medigue C, Vallenet D, Lajus A, Rouy Z, Martinez-Vaz B, Tiffin P, Young ND, Sadowsky MJ., Genome Biol. 14(2), 2013
PMID: 23425606
Identification of genistein-inducible and type III-secreted proteins of Bradyrhizobium japonicum.
Suss C, Hempel J, Zehner S, Krause A, Patschkowski T, Gottfert M., J. Biotechnol. 126(1), 2006
PMID: 16707185
Suss C, Hempel J, Zehner S, Krause A, Patschkowski T, Gottfert M., J. Biotechnol. 126(1), 2006
PMID: 16707185
AUTHOR UNKNOWN, 0
ISRf1, a transposable insertion sequence from Sinorhizobium fredii.
Vinardell JM, Ollero FJ, Krishnan HB, del Rosario Espuny M, Villalobo E, Pueppke SG, Ruiz-Sainz JE., Gene 204(1-2), 1997
PMID: 9434166
Vinardell JM, Ollero FJ, Krishnan HB, del Rosario Espuny M, Villalobo E, Pueppke SG, Ruiz-Sainz JE., Gene 204(1-2), 1997
PMID: 9434166
The effect of FITA mutations on the symbiotic properties of Sinorhizobium fredii varies in a chromosomal-background-dependent manner.
Vinardell JM, Lopez-Baena FJ, Hidalgo A, Ollero FJ, Bellogin R, del Rosario Espuny M, Temprano F, Romero F, Krishnan HB, Pueppke SG, Ruiz-Sainz JE., Arch. Microbiol. 181(2), 2003
PMID: 14689165
Vinardell JM, Lopez-Baena FJ, Hidalgo A, Ollero FJ, Bellogin R, del Rosario Espuny M, Temprano F, Romero F, Krishnan HB, Pueppke SG, Ruiz-Sainz JE., Arch. Microbiol. 181(2), 2003
PMID: 14689165
NolR regulates diverse symbiotic signals of Sinorhizobium fredii HH103.
Vinardell JM, Ollero FJ, Hidalgo A, Lopez-Baena FJ, Medina C, Ivanov-Vangelov K, Parada M, Madinabeitia N, Espuny Mdel R, Bellogin RA, Camacho M, Rodriguez-Navarro DN, Soria-Diaz ME, Gil-Serrano AM, Ruiz-Sainz JE., Mol. Plant Microbe Interact. 17(6), 2004
PMID: 15195950
Vinardell JM, Ollero FJ, Hidalgo A, Lopez-Baena FJ, Medina C, Ivanov-Vangelov K, Parada M, Madinabeitia N, Espuny Mdel R, Bellogin RA, Camacho M, Rodriguez-Navarro DN, Soria-Diaz ME, Gil-Serrano AM, Ruiz-Sainz JE., Mol. Plant Microbe Interact. 17(6), 2004
PMID: 15195950
TtsI regulates symbiotic genes in Rhizobium species NGR234 by binding to tts boxes.
Wassem R, Kobayashi H, Kambara K, Le Quere A, Walker GC, Broughton WJ, Deakin WJ., Mol. Microbiol. 68(3), 2008
PMID: 18363648
Wassem R, Kobayashi H, Kambara K, Le Quere A, Walker GC, Broughton WJ, Deakin WJ., Mol. Microbiol. 68(3), 2008
PMID: 18363648
Genome sequence of the soybean symbiont Sinorhizobium fredii HH103.
Weidner S, Becker A, Bonilla I, Jaenicke S, Lloret J, Margaret I, Puhler A, Ruiz-Sainz JE, Schneiker-Bekel S, Szczepanowski R, Vinardell JM, Zehner S, Gottfert M., J. Bacteriol. 194(6), 2012
PMID: 22374952
Weidner S, Becker A, Bonilla I, Jaenicke S, Lloret J, Margaret I, Puhler A, Ruiz-Sainz JE, Schneiker-Bekel S, Szczepanowski R, Vinardell JM, Zehner S, Gottfert M., J. Bacteriol. 194(6), 2012
PMID: 22374952
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.
Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, Dao P, Sahinalp SC, Ester M, Foster LJ, Brinkman FS., Bioinformatics 26(13), 2010
PMID: 20472543
Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, Dao P, Sahinalp SC, Ester M, Foster LJ, Brinkman FS., Bioinformatics 26(13), 2010
PMID: 20472543
Expression of the Bradyrhizobium japonicum type III secretion system in legume nodules and analysis of the associated tts box promoter.
Zehner S, Schober G, Wenzel M, Lang K, Gottfert M., Mol. Plant Microbe Interact. 21(8), 2008
PMID: 18616405
Zehner S, Schober G, Wenzel M, Lang K, Gottfert M., Mol. Plant Microbe Interact. 21(8), 2008
PMID: 18616405
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