PUB - Publikationen an der Universität Bielefeld

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• [55]
  

  2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2989114

  Baake, Ellen, Cordero, Fernando, and Di Gaspero, Enrico. “The mutation process on the ancestral line under selection.”. Theoretical population biology (2024).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [54]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979037

  Baake, Ellen, Esercito, Luigi, and Hummel, Sebastian. “Lines of descent in a Moran model with frequency-dependent selection and mutation”. Stochastic Processes and their Applications 160 (2023): 409-457.

  PUB | DOI | WoS
   
• [53]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965524

  Baake, Ellen, Cordero, Fernando, and Hummel, Sebastian. “Lines of descent in the deterministic mutation–selection model with pairwise interaction”. Annals of Applied Probability 32.4 (2022): 2400-2447.

  PUB | DOI | WoS
   
• [52]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953579

  Alberti, Frederic, Baake, Ellen, Letter, I, and Martinez, S. “Solving the migration-recombination equation from a genealogical point of view”. Journal of mathematical biology 82.5 (2021): 41 .

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [51]
  

  2021 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2957507

  Alberti, Frederic, Herrmann, Carolin, and Baake, Ellen. “Selection, recombination, and the ancestral initiation graph”. Theoretical population biology (In Press).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [50]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957017

  Alberti, Frederic, and Baake, Ellen. “Solving the Selection-Recombination Equation: Ancestral Lines and Dual Processes”. Documenta Mathematica 26 (2021): 743-793.

  PUB | DOI | WoS
   
• [49]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936339

  Baake, Ellen, Gonzalez Casanova, Adrian, Probst, Sebastian, and Wakolbinger, Anton. “Modelling and simulating Lenski's long-term evolution experiment”. THEORETICAL POPULATION BIOLOGY 127 (2019): 58-74.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [48]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931242

  Baake, Ellen, Cordero, Fernando, and Hummel, Sebastian. “A probabilistic view on the deterministic mutation-selection equation: dynamics, equilibria, and ancestry via individual lines of descent”. JOURNAL OF MATHEMATICAL BIOLOGY 77.3 (2018): 795-820.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [47]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920936

  Baake, Ellen, and Wakolbinger, Anton. “Lines of Descent Under Selection”. JOURNAL OF STATISTICAL PHYSICS 172.1 (2018): 156-174.

  PUB | DOI | WoS
   
• [46]
  

  2017 | Preprint | PUB-ID: 2908549

  Baake, Ellen, and Esser, Mareike. “Fragmentation process, pruning poset for rooted forests, and Möbius inversion”. arXiv:1702.03173 (2017).

  PUB | Download (ext.) | arXiv
   
• [45]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2780316

  Baake, Ellen, Baake, Michael, and Salamat, Majid. “The general recombination equation in continuous time and its solution”. Discrete and Continuous Dynamical Systems 36.1 (2016): 63-95.

  PUB | DOI | WoS
   
• [44]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908021

  Baake, Ellen, and Baake, Michael. “Haldane linearisation done right: Solving the nonlinear recombination equation the easy way”. Discrete and Continuous Dynamical Systems. A 36.12 (2016): 6645-6656.

  PUB | DOI | WoS | arXiv
   
• [43]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908405

  Baake, Ellen, Lenz, Ute, and Wakolbinger, Anton. “The common ancestor type distribution of a $\Lambda$-Wright-Fisher process with selection and mutation”. Electronic Communications in Probability 21 (2016): 59.

  PUB | DOI | WoS
   
• [42]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904686

  Esser, Mareike, Probst, Sebastian, and Baake, Ellen. “Partitioning, duality, and linkage disequilibria in the Moran model with recombination”. JOURNAL OF MATHEMATICAL BIOLOGY 73.1 (2016): 161-197.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [41]
  

  2015 | Preprint | PUB-ID: 2908408

  Baake, Ellen, and Wakolbinger, Anton. “Feller's Contributions to Mathematical Biology”. arXiv:1501.05278 (2015).

  PUB | arXiv
   
• [40]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766816

  Lenz, Ute, Kluth, Sandra, Baake, Ellen, and Wakolbinger, Anton. “Looking down in the ancestral selection graph: A probabilistic approach to the common ancestor type distribution”. Theoretical Population Biology 103 (2015): 27-37.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [39]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677355

  Baake, Ellen, and von Wangenheim, Ute. “Single-crossover recombination and ancestral recombination trees”. Journal of Mathematical Biology 68.6 (2014): 1371-1402.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [38]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635471

  Kluth, Sandra, Hustedt, Thiemo, and Baake, Ellen. “The Common Ancestor Process Revisited”. Bulletin Of Mathematical Biology 75.11 (2013): 2003-2027.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [37]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645211

  Kluth, Sandra, and Baake, Ellen. “The Moran model with selection: Fixation probabilities, ancestral lines, and an alternative particle representation”. Theoretical Population Biology 90 (2013): 104-112.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [36]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2377270

  Baake, Ellen, and Hustedt, Thiemo. “Moment closure in a Moran model with recombination”. Markov Processes Relat. Fields 17.3 (2011): 429-446.

  PUB | arXiv
   
• [35]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796454

  von Wangenheim, Ute, Baake, Ellen, and Baake, Michael. “Single-crossover recombination in discrete time”. JOURNAL OF MATHEMATICAL BIOLOGY 60.5 (2010): 727-760.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [34]
  

  2010 | Konferenzbeitrag | PUB-ID: 2377283

  Baake, Ellen. “Deterministic and stochastic aspects of single-crossover recombination”. Proceedings of the International Congress of Mathematicians, Hyderabad 2010, ed. R. Bhatia, Hindustan Book Agency, New Delhi, Vol. IV, pp. 3038--3053. 2010.

  PUB | arXiv
   
• [33]
  

  2009 | Zeitschriftenaufsatz | PUB-ID: 2378093

  Baake, Ellen. “Deterministic and stochastic aspects of recombination”. Oberwolfach Reports 6 (2009): 1366.

  PUB
   
• [32]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635450

  Lipsmeier, Florian, and Baake, Ellen. “Rare Event Simulation for T-cell Activation”. JOURNAL OF STATISTICAL PHYSICS 134.3 (2009): 537-566.

  PUB | DOI | WoS
   
• [31]
  

  2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2378061

  Baake, Ellen, and Lipsmeier, Florian. “Rare event simulation in immunobiology”. Proceedings of the 7th International Workshop on Rare Event Simulation RESIM 2008, Rennes, France. 2008.

  PUB
   
• [30]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630777

  Baake, Ellen, and Herms, Inke. “Single-crossover dynamics: Finite versus infinite populations”. BULLETIN OF MATHEMATICAL BIOLOGY 70.2 (2008): 603-624.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [29]
  

  2008 | Zeitschriftenaufsatz | PUB-ID: 1927750

  Bialowons, Robert, and Baake, Ellen. “Ancestral processes with selection: Branching and Moran models”. Banach Center Publications 80 (2008): 33-52.

  PUB | DOI | arXiv
   
• [28]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586423

  Zint, Natali, Baake, Ellen, and den Hollander, Frank. “How T-cells use large deviations to recognize foreign antigens”. JOURNAL OF MATHEMATICAL BIOLOGY 57.6 (2008): 841-861.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [27]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378105

  Baake, Ellen. “Are mutations spontaneous or directed”. Nieuw Archief voor Wiskunde 5/8.3 (2007): 171-174.

  PUB
   
• [26]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595869

  Baake, Ellen, and Georgii, Hans-Otto. “Mutation, selection, and ancestry in branching models: a variational approach”. JOURNAL OF MATHEMATICAL BIOLOGY 54.2 (2007): 257-303.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604953

  Baake, Ellen, Baake, Michael, Bovier, Anton, and Klein, Markus. “An asymptotic maximum principle for essentially linear evolution models”. JOURNAL OF MATHEMATICAL BIOLOGY 50.1 (2005): 83-114.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [24]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2377274

  Georgii, Hans-Otto, and Baake, Ellen. “Supercritical multitype branching processes: the ancestral types of typical individuals”. Adv. Appl. Prob. 35 (2003), 1090-1110 (2003).

  PUB | arXiv
   
• [23]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1927781

  Baake, Michael, and Baake, Ellen. “An exactly solved model for mutation, recombination and selection”. Canadian Journal of Mathematics 55.1 (2003): 3-41.

  PUB | DOI | WoS | arXiv
   
• [22]
  

  2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613803

  Hermisson, Joachim, Redner, Oliver, Wagner, Holger, and Baake, Ellen. “Mutation-selection balance: Ancestry, load, and maximum principle”. THEORETICAL POPULATION BIOLOGY 62.1 (2002): 9-46.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2377995

  Baake, Ellen, and Wagner, Holger. “Mutation-selection models solved exactly with methods of statistical mechanics”. GENETICS RESEARCH 78 (2001): 93-117.

  PUB
   
• [20]
  

  2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378040

  Baake, Ellen. “Mutation and recombination with tight linkage”. JOURNAL OF MATHEMATICAL BIOLOGY 42 (2001): 455-488.

  PUB
   
• [19]
  

  1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378046

  Baake, Ellen, and von Haeseler, Arndt. “Distance measures in terms of substitution processes”. THEORETICAL POPULATION BIOLOGY 55 (1999): 166-175.

  PUB
   
• [18]
  

  1999 | Sammelwerksbeitrag | PUB-ID: 1927777

  Gabriel, Wilfried, and Baake, Ellen. “Biological evolution through mutation, selection, and drift: An introductory review”. in: Ann. Rev. Comp. Phys. VII (D. Stauffer, ed.), pp. 203-264 (World Scientific, Singapore, 2000). 1999.

  PUB | arXiv
   
• [17]
  

  1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378116

  Baake, Ellen. “What can and what cannot be inferred from pairwise sequence comparisons?”. MATHEMATICAL BIOSCIENCES 154 (1998): 1-21.

  PUB
   
• [16]
  

  1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378123

  Wagner, Holger, Baake, Ellen, and Gerisch, Thomas. “Ising quantum chain and sequence evolution”. JOURNAL OF STATISTICAL PHYSICS 92.5/6 (1998): 1017-1052.

  PUB
   
• [15]
  

  1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378127

  Baake, Ellen, Baake, Michael, and Wagner, Holger. “Quantum mechanics versus classical probabilities in biological evolution”. PHYSICAL REVIEW E 57.1 (1998): 1191-1192.

  PUB
   
• [14]
  

  1997 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2378442

  Wagner, Holger, and Baake, Ellen. “Ising quantum chain and biological evolution”. Physical Applications and Mathematical Aspects of Geometry, Groups and Algebras. Ed. H.-D. Doebner, P. Nattermann, and W. Scherer. Singapore: World Scientific, 1997.Vol. II. 821-825.

  PUB
   
• [13]
  

  1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378376

  Baake, Ellen, Baake, Michael, and Wagner, Holger. “Ising quantum chain is equivalent to a model of biological evolution”. PHYSICAL REVIEW LETTERS 78 (1997): 559-562.

  PUB
   
• [12]
  

  1997 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2378438

  Baake, Ellen. “Diploid sequence space, dominance, and evolution”. Advances in Mathematical Population Dynamics - Molecules, Cells and Man. Ed. O. Arino, D. Axelrod, and M. Kimmel. Singapore: World Scientific, 1997. 1-15.

  PUB
   
• [11]
  

  1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378139

  Baake, Ellen, and Wiehe, Thomas. “Bifurcations in haploid and diploid sequence space models”. JOURNAL OF MATHEMATICAL BIOLOGY 35.3 (1997): 321-343.

  PUB
   
• [10]
  

  1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378431

  Baake, Ellen. “Diploid models on sequence space”. JOURNAL OF BIOLOGICAL SYSTEMS 3 (1995): 343-349.

  PUB
   
• [9]
  

  1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378422

  Wiehe, Thomas, Baake, Ellen, and Schuster, Peter. “Error propagation in reproduction of diploid organisms. A case study on single peaked landscapes”. JOURNAL OF THEORETICAL BIOLOGY 177 (1995): 1-15.

  PUB
   
• [8]
  

  1993 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775603

  Baake, Michael, Baake, Ellen, and Eich, E. “On the role of invariants for the parameter estimation problem in Hamiltonian systems”. Physics letters 180.1-2 (1993): 74-82.

  PUB | PDF | DOI | WoS
   
• [7]
  

  1992 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775599

  Baake, Ellen, Baake, Michael, Bock, H. G., and Briggs, K. M. “Fitting ordinary differential equations to chaotic data”. Physical Review A 45.8 (1992): 5524-5529.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  1992 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775596

  Baake, Ellen, and Schlöder, Johannes P. “Modelling the fast fluorescence rise of photosynthesis”. Bulletin of mathematical biology 54.6 (1992): 999-1021.

  PUB | PDF | DOI | WoS
   
• [5]
  

  1990 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2378459

  Baake, Ellen, and Strasser, R.J. “A differential equation model for the description of the fast fluorescence rise (O-I-D-P-transient) in leaves”. Current Research in Photosynthesis. Ed. M. Baltscheffsky. Dordrecht: Kluwer, 1990. 443-449.

  PUB
   
• [4]
  

  1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775593

  Pfündel, Erhard, and Baake, Ellen. “A quantitative description of fluorescence excitation spectra in intact bean leaves greened under intermittent light”. Photosynthesis Research 26.1 (1990): 19-28.

  PUB | PDF | DOI
   
• [3]
  

  1989 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378482

  Baake, Ellen, and Strasser, R.J. “A differential equation model for the description of the fast fluorescence rise (O-I-D-P-transient) in leaves”. PHYSIOLOGIA PLANTARUM 76 (1989).

  PUB
   
• [2]
  

  1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785358

  Buff, Ellen, Baake, Michael, and Sievers, Andreas. “An Empirical Function for the Description of Root Growth”. Plant Physiology 83.3 (1987): 685-690.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [1]
  

  1986 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785355

  Baake, Michael, and Buff, Ellen. “From cell growth to root growth”. Journal of Theoretical Biology 123.3 (1986): 347-365.

  PUB | PDF | DOI | WoS