54 Publikationen

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  • [54]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979037
    E. Baake, L. Esercito, and S. Hummel, “Lines of descent in a Moran model with frequency-dependent selection and mutation”, Stochastic Processes and their Applications, vol. 160, 2023, pp. 409-457.
    PUB | DOI | WoS
     
  • [53]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965524
    E. Baake, F. Cordero, and S. Hummel, “Lines of descent in the deterministic mutation–selection model with pairwise interaction”, Annals of Applied Probability, vol. 32, 2022, pp. 2400-2447.
    PUB | DOI | WoS
     
  • [52]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953579 OA
    F. Alberti, et al., “Solving the migration-recombination equation from a genealogical point of view”, Journal of mathematical biology, vol. 82, 2021, : 41 .
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [51]
    2021 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2957507
    F. Alberti, C. Herrmann, and E. Baake, “Selection, recombination, and the ancestral initiation graph”, Theoretical population biology, In Press.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [50]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957017
    F. Alberti and E. Baake, “Solving the Selection-Recombination Equation: Ancestral Lines and Dual Processes”, Documenta Mathematica , vol. 26, 2021, pp. 743-793.
    PUB | DOI | WoS
     
  • [49]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936339
    E. Baake, et al., “Modelling and simulating Lenski's long-term evolution experiment”, THEORETICAL POPULATION BIOLOGY, vol. 127, 2019, pp. 58-74.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [48]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931242
    E. Baake, F. Cordero, and S. Hummel, “A probabilistic view on the deterministic mutation-selection equation: dynamics, equilibria, and ancestry via individual lines of descent”, JOURNAL OF MATHEMATICAL BIOLOGY, vol. 77, 2018, pp. 795-820.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [47]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920936
    E. Baake and A. Wakolbinger, “Lines of Descent Under Selection”, JOURNAL OF STATISTICAL PHYSICS, vol. 172, 2018, pp. 156-174.
    PUB | DOI | WoS
     
  • [46]
    2017 | Preprint | PUB-ID: 2908549
    E. Baake and M. Esser, “Fragmentation process, pruning poset for rooted forests, and Möbius inversion”, arXiv:1702.03173, 2017.
    PUB | Download (ext.) | arXiv
     
  • [45]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2780316
    E. Baake, M. Baake, and M. Salamat, “The general recombination equation in continuous time and its solution”, Discrete and Continuous Dynamical Systems, vol. 36, 2016, pp. 63-95.
    PUB | DOI | WoS
     
  • [44]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908021
    E. Baake and M. Baake, “Haldane linearisation done right: Solving the nonlinear recombination equation the easy way”, Discrete and Continuous Dynamical Systems. A, vol. 36, 2016, pp. 6645-6656.
    PUB | DOI | WoS | arXiv
     
  • [43]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908405
    E. Baake, U. Lenz, and A. Wakolbinger, “The common ancestor type distribution of a $\Lambda$-Wright-Fisher process with selection and mutation”, Electronic Communications in Probability, vol. 21, 2016, : 59.
    PUB | DOI | WoS
     
  • [42]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904686
    M. Esser, S. Probst, and E. Baake, “Partitioning, duality, and linkage disequilibria in the Moran model with recombination”, JOURNAL OF MATHEMATICAL BIOLOGY, vol. 73, 2016, pp. 161-197.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [41]
    2015 | Preprint | PUB-ID: 2908408
    E. Baake and A. Wakolbinger, “Feller's Contributions to Mathematical Biology”, arXiv:1501.05278, 2015.
    PUB | arXiv
     
  • [40]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766816
    U. Lenz, et al., “Looking down in the ancestral selection graph: A probabilistic approach to the common ancestor type distribution”, Theoretical Population Biology, vol. 103, 2015, pp. 27-37.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [39]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677355
    E. Baake and U. von Wangenheim, “Single-crossover recombination and ancestral recombination trees”, Journal of Mathematical Biology, vol. 68, 2014, pp. 1371-1402.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [38]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635471
    S. Kluth, T. Hustedt, and E. Baake, “The Common Ancestor Process Revisited”, Bulletin Of Mathematical Biology, vol. 75, 2013, pp. 2003-2027.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [37]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645211
    S. Kluth and E. Baake, “The Moran model with selection: Fixation probabilities, ancestral lines, and an alternative particle representation”, Theoretical Population Biology, vol. 90, 2013, pp. 104-112.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [36]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2377270
    E. Baake and T. Hustedt, “Moment closure in a Moran model with recombination”, Markov Processes Relat. Fields, vol. 17, 2011, pp. 429-446.
    PUB | arXiv
     
  • [35]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796454
    U. von Wangenheim, E. Baake, and M. Baake, “Single-crossover recombination in discrete time”, JOURNAL OF MATHEMATICAL BIOLOGY, vol. 60, 2010, pp. 727-760.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [34]
    2010 | Konferenzbeitrag | PUB-ID: 2377283
    E. Baake, “Deterministic and stochastic aspects of single-crossover recombination”, Proceedings of the International Congress of Mathematicians, Hyderabad 2010, ed. R. Bhatia, Hindustan Book Agency, New Delhi, Vol. IV, pp. 3038--3053, 2010.
    PUB | arXiv
     
  • [33]
    2009 | Zeitschriftenaufsatz | PUB-ID: 2378093
    E. Baake, “Deterministic and stochastic aspects of recombination”, Oberwolfach Reports, vol. 6, 2009, pp. 1366.
    PUB
     
  • [32]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635450
    F. Lipsmeier and E. Baake, “Rare Event Simulation for T-cell Activation”, JOURNAL OF STATISTICAL PHYSICS, vol. 134, 2009, pp. 537-566.
    PUB | DOI | WoS
     
  • [31]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2378061
    E. Baake and F. Lipsmeier, “Rare event simulation in immunobiology”, Proceedings of the 7th International Workshop on Rare Event Simulation RESIM 2008, Rennes, France, 2008.
    PUB
     
  • [30]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630777
    E. Baake and I. Herms, “Single-crossover dynamics: Finite versus infinite populations”, BULLETIN OF MATHEMATICAL BIOLOGY, vol. 70, 2008, pp. 603-624.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [29]
    2008 | Zeitschriftenaufsatz | PUB-ID: 1927750
    R. Bialowons and E. Baake, “Ancestral processes with selection: Branching and Moran models”, Banach Center Publications, vol. 80, 2008, pp. 33-52.
    PUB | DOI | arXiv
     
  • [28]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586423
    N. Zint, E. Baake, and F. den Hollander, “How T-cells use large deviations to recognize foreign antigens”, JOURNAL OF MATHEMATICAL BIOLOGY, vol. 57, 2008, pp. 841-861.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [27]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378105
    E. Baake, “Are mutations spontaneous or directed”, Nieuw Archief voor Wiskunde, vol. 5/8, 2007, pp. 171-174.
    PUB
     
  • [26]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595869
    E. Baake and H.-O. Georgii, “Mutation, selection, and ancestry in branching models: a variational approach”, JOURNAL OF MATHEMATICAL BIOLOGY, vol. 54, 2007, pp. 257-303.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604953
    E. Baake, et al., “An asymptotic maximum principle for essentially linear evolution models”, JOURNAL OF MATHEMATICAL BIOLOGY, vol. 50, 2005, pp. 83-114.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [24]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2377274
    H.-O. Georgii and E. Baake, “Supercritical multitype branching processes: the ancestral types of typical individuals”, Adv. Appl. Prob. 35 (2003), 1090-1110, 2003.
    PUB | arXiv
     
  • [23]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1927781
    M. Baake and E. Baake, “An exactly solved model for mutation, recombination and selection”, Canadian Journal of Mathematics, vol. 55, 2003, pp. 3-41.
    PUB | DOI | WoS | arXiv
     
  • [22]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613803
    J. Hermisson, et al., “Mutation-selection balance: Ancestry, load, and maximum principle”, THEORETICAL POPULATION BIOLOGY, vol. 62, 2002, pp. 9-46.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [21]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2377995
    E. Baake and H. Wagner, “Mutation-selection models solved exactly with methods of statistical mechanics”, GENETICS RESEARCH, vol. 78, 2001, pp. 93-117.
    PUB
     
  • [20]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378040
    E. Baake, “Mutation and recombination with tight linkage”, JOURNAL OF MATHEMATICAL BIOLOGY, vol. 42, 2001, pp. 455-488.
    PUB
     
  • [19]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378046
    E. Baake and A. von Haeseler, “Distance measures in terms of substitution processes”, THEORETICAL POPULATION BIOLOGY, vol. 55, 1999, pp. 166-175.
    PUB
     
  • [18]
    1999 | Sammelwerksbeitrag | PUB-ID: 1927777
    W. Gabriel and E. Baake, “Biological evolution through mutation, selection, and drift: An introductory review”, in: Ann. Rev. Comp. Phys. VII (D. Stauffer, ed.), pp. 203-264 (World Scientific, Singapore, 2000), 1999.
    PUB | arXiv
     
  • [17]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378116
    E. Baake, “What can and what cannot be inferred from pairwise sequence comparisons?”, MATHEMATICAL BIOSCIENCES, vol. 154, 1998, pp. 1-21.
    PUB
     
  • [16]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378123
    H. Wagner, E. Baake, and T. Gerisch, “Ising quantum chain and sequence evolution”, JOURNAL OF STATISTICAL PHYSICS, vol. 92, 1998, pp. 1017-1052.
    PUB
     
  • [15]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378127
    E. Baake, M. Baake, and H. Wagner, “Quantum mechanics versus classical probabilities in biological evolution”, PHYSICAL REVIEW E, vol. 57, 1998, pp. 1191-1192.
    PUB
     
  • [14]
    1997 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2378442
    H. Wagner and E. Baake, “Ising quantum chain and biological evolution”, Physical Applications and Mathematical Aspects of Geometry, Groups and Algebras, H.-D. Doebner, P. Nattermann, and W. Scherer, eds., vol. II, Singapore: World Scientific, 1997, pp.821-825.
    PUB
     
  • [13]
    1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378376
    E. Baake, M. Baake, and H. Wagner, “Ising quantum chain is equivalent to a model of biological evolution”, PHYSICAL REVIEW LETTERS, vol. 78, 1997, pp. 559-562.
    PUB
     
  • [12]
    1997 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2378438
    E. Baake, “Diploid sequence space, dominance, and evolution”, Advances in Mathematical Population Dynamics - Molecules, Cells and Man, O. Arino, D. Axelrod, and M. Kimmel, eds., Singapore: World Scientific, 1997, pp.1-15.
    PUB
     
  • [11]
    1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378139
    E. Baake and T. Wiehe, “Bifurcations in haploid and diploid sequence space models”, JOURNAL OF MATHEMATICAL BIOLOGY, vol. 35, 1997, pp. 321-343.
    PUB
     
  • [10]
    1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378431
    E. Baake, “Diploid models on sequence space”, JOURNAL OF BIOLOGICAL SYSTEMS, vol. 3, 1995, pp. 343-349.
    PUB
     
  • [9]
    1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378422
    T. Wiehe, E. Baake, and P. Schuster, “Error propagation in reproduction of diploid organisms. A case study on single peaked landscapes”, JOURNAL OF THEORETICAL BIOLOGY, vol. 177, 1995, pp. 1-15.
    PUB
     
  • [8]
    1993 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775603 OA
    M. Baake, E. Baake, and E. Eich, “On the role of invariants for the parameter estimation problem in Hamiltonian systems”, Physics letters, vol. 180, 1993, pp. 74-82.
    PUB | PDF | DOI | WoS
     
  • [7]
    1992 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775599 OA
    E. Baake, et al., “Fitting ordinary differential equations to chaotic data”, Physical Review A, vol. 45, 1992, pp. 5524-5529.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    1992 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775596 OA
    E. Baake and J.P. Schlöder, “Modelling the fast fluorescence rise of photosynthesis”, Bulletin of mathematical biology, vol. 54, 1992, pp. 999-1021.
    PUB | PDF | DOI | WoS
     
  • [5]
    1990 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2378459
    E. Baake and R.J. Strasser, “A differential equation model for the description of the fast fluorescence rise (O-I-D-P-transient) in leaves”, Current Research in Photosynthesis, M. Baltscheffsky, ed., Dordrecht: Kluwer, 1990, pp.443-449.
    PUB
     
  • [4]
    1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775593 OA
    E. Pfündel and E. Baake, “A quantitative description of fluorescence excitation spectra in intact bean leaves greened under intermittent light”, Photosynthesis Research, vol. 26, 1990, pp. 19-28.
    PUB | PDF | DOI
     
  • [3]
    1989 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378482
    E. Baake and R.J. Strasser, “A differential equation model for the description of the fast fluorescence rise (O-I-D-P-transient) in leaves”, PHYSIOLOGIA PLANTARUM, vol. 76, 1989.
    PUB
     
  • [2]
    1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785358 OA
    E. Buff, M. Baake, and A. Sievers, “An Empirical Function for the Description of Root Growth”, Plant Physiology, vol. 83, 1987, pp. 685-690.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    1986 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785355 OA
    M. Baake and E. Buff, “From cell growth to root growth”, Journal of Theoretical Biology, vol. 123, 1986, pp. 347-365.
    PUB | PDF | DOI | WoS
     

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