54 Publikationen

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  • [54]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979037
    Baake, Ellen, Esercito, Luigi, and Hummel, Sebastian. 2023. “Lines of descent in a Moran model with frequency-dependent selection and mutation”. Stochastic Processes and their Applications 160: 409-457.
    PUB | DOI | WoS
     
  • [53]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965524
    Baake, Ellen, Cordero, Fernando, and Hummel, Sebastian. 2022. “Lines of descent in the deterministic mutation–selection model with pairwise interaction”. Annals of Applied Probability 32 (4): 2400-2447.
    PUB | DOI | WoS
     
  • [52]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953579 OA
    Alberti, Frederic, Baake, Ellen, Letter, I, and Martinez, S. 2021. “Solving the migration-recombination equation from a genealogical point of view”. Journal of mathematical biology 82 (5): 41 .
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [51]
    2021 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2957507
    Alberti, Frederic, Herrmann, Carolin, and Baake, Ellen. In Press. “Selection, recombination, and the ancestral initiation graph”. Theoretical population biology.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [50]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957017
    Alberti, Frederic, and Baake, Ellen. 2021. “Solving the Selection-Recombination Equation: Ancestral Lines and Dual Processes”. Documenta Mathematica 26: 743-793.
    PUB | DOI | WoS
     
  • [49]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936339
    Baake, Ellen, Gonzalez Casanova, Adrian, Probst, Sebastian, and Wakolbinger, Anton. 2019. “Modelling and simulating Lenski's long-term evolution experiment”. THEORETICAL POPULATION BIOLOGY 127: 58-74.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [48]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931242
    Baake, Ellen, Cordero, Fernando, and Hummel, Sebastian. 2018. “A probabilistic view on the deterministic mutation-selection equation: dynamics, equilibria, and ancestry via individual lines of descent”. JOURNAL OF MATHEMATICAL BIOLOGY 77 (3): 795-820.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [47]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920936
    Baake, Ellen, and Wakolbinger, Anton. 2018. “Lines of Descent Under Selection”. JOURNAL OF STATISTICAL PHYSICS 172 (1): 156-174.
    PUB | DOI | WoS
     
  • [46]
    2017 | Preprint | PUB-ID: 2908549
    Baake, Ellen, and Esser, Mareike. 2017. “Fragmentation process, pruning poset for rooted forests, and Möbius inversion”. arXiv:1702.03173.
    PUB | Download (ext.) | arXiv
     
  • [45]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2780316
    Baake, Ellen, Baake, Michael, and Salamat, Majid. 2016. “The general recombination equation in continuous time and its solution”. Discrete and Continuous Dynamical Systems 36 (1): 63-95.
    PUB | DOI | WoS
     
  • [44]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908021
    Baake, Ellen, and Baake, Michael. 2016. “Haldane linearisation done right: Solving the nonlinear recombination equation the easy way”. Discrete and Continuous Dynamical Systems. A 36 (12): 6645-6656.
    PUB | DOI | WoS | arXiv
     
  • [43]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908405
    Baake, Ellen, Lenz, Ute, and Wakolbinger, Anton. 2016. “The common ancestor type distribution of a $\Lambda$-Wright-Fisher process with selection and mutation”. Electronic Communications in Probability 21: 59.
    PUB | DOI | WoS
     
  • [42]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904686
    Esser, Mareike, Probst, Sebastian, and Baake, Ellen. 2016. “Partitioning, duality, and linkage disequilibria in the Moran model with recombination”. JOURNAL OF MATHEMATICAL BIOLOGY 73 (1): 161-197.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [41]
    2015 | Preprint | PUB-ID: 2908408
    Baake, Ellen, and Wakolbinger, Anton. 2015. “Feller's Contributions to Mathematical Biology”. arXiv:1501.05278.
    PUB | arXiv
     
  • [40]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766816
    Lenz, Ute, Kluth, Sandra, Baake, Ellen, and Wakolbinger, Anton. 2015. “Looking down in the ancestral selection graph: A probabilistic approach to the common ancestor type distribution”. Theoretical Population Biology 103: 27-37.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [39]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677355
    Baake, Ellen, and von Wangenheim, Ute. 2014. “Single-crossover recombination and ancestral recombination trees”. Journal of Mathematical Biology 68 (6): 1371-1402.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [38]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635471
    Kluth, Sandra, Hustedt, Thiemo, and Baake, Ellen. 2013. “The Common Ancestor Process Revisited”. Bulletin Of Mathematical Biology 75 (11): 2003-2027.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [37]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645211
    Kluth, Sandra, and Baake, Ellen. 2013. “The Moran model with selection: Fixation probabilities, ancestral lines, and an alternative particle representation”. Theoretical Population Biology 90: 104-112.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [36]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2377270
    Baake, Ellen, and Hustedt, Thiemo. 2011. “Moment closure in a Moran model with recombination”. Markov Processes Relat. Fields 17 (3): 429-446.
    PUB | arXiv
     
  • [35]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796454
    von Wangenheim, Ute, Baake, Ellen, and Baake, Michael. 2010. “Single-crossover recombination in discrete time”. JOURNAL OF MATHEMATICAL BIOLOGY 60 (5): 727-760.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [34]
    2010 | Konferenzbeitrag | PUB-ID: 2377283
    Baake, Ellen. 2010. “Deterministic and stochastic aspects of single-crossover recombination”. In Proceedings of the International Congress of Mathematicians, Hyderabad 2010, ed. R. Bhatia, Hindustan Book Agency, New Delhi, Vol. IV, pp. 3038--3053.
    PUB | arXiv
     
  • [33]
    2009 | Zeitschriftenaufsatz | PUB-ID: 2378093
    Baake, Ellen. 2009. “Deterministic and stochastic aspects of recombination”. Oberwolfach Reports 6: 1366.
    PUB
     
  • [32]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635450
    Lipsmeier, Florian, and Baake, Ellen. 2009. “Rare Event Simulation for T-cell Activation”. JOURNAL OF STATISTICAL PHYSICS 134 (3): 537-566.
    PUB | DOI | WoS
     
  • [31]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2378061
    Baake, Ellen, and Lipsmeier, Florian. 2008. “Rare event simulation in immunobiology”. In Proceedings of the 7th International Workshop on Rare Event Simulation RESIM 2008, Rennes, France.
    PUB
     
  • [30]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630777
    Baake, Ellen, and Herms, Inke. 2008. “Single-crossover dynamics: Finite versus infinite populations”. BULLETIN OF MATHEMATICAL BIOLOGY 70 (2): 603-624.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [29]
    2008 | Zeitschriftenaufsatz | PUB-ID: 1927750
    Bialowons, Robert, and Baake, Ellen. 2008. “Ancestral processes with selection: Branching and Moran models”. Banach Center Publications 80: 33-52.
    PUB | DOI | arXiv
     
  • [28]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586423
    Zint, Natali, Baake, Ellen, and den Hollander, Frank. 2008. “How T-cells use large deviations to recognize foreign antigens”. JOURNAL OF MATHEMATICAL BIOLOGY 57 (6): 841-861.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [27]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378105
    Baake, Ellen. 2007. “Are mutations spontaneous or directed”. Nieuw Archief voor Wiskunde 5/8 (3): 171-174.
    PUB
     
  • [26]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595869
    Baake, Ellen, and Georgii, Hans-Otto. 2007. “Mutation, selection, and ancestry in branching models: a variational approach”. JOURNAL OF MATHEMATICAL BIOLOGY 54 (2): 257-303.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604953
    Baake, Ellen, Baake, Michael, Bovier, Anton, and Klein, Markus. 2005. “An asymptotic maximum principle for essentially linear evolution models”. JOURNAL OF MATHEMATICAL BIOLOGY 50 (1): 83-114.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [24]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2377274
    Georgii, Hans-Otto, and Baake, Ellen. 2003. “Supercritical multitype branching processes: the ancestral types of typical individuals”. Adv. Appl. Prob. 35 (2003), 1090-1110.
    PUB | arXiv
     
  • [23]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1927781
    Baake, Michael, and Baake, Ellen. 2003. “An exactly solved model for mutation, recombination and selection”. Canadian Journal of Mathematics 55 (1): 3-41.
    PUB | DOI | WoS | arXiv
     
  • [22]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613803
    Hermisson, Joachim, Redner, Oliver, Wagner, Holger, and Baake, Ellen. 2002. “Mutation-selection balance: Ancestry, load, and maximum principle”. THEORETICAL POPULATION BIOLOGY 62 (1): 9-46.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [21]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2377995
    Baake, Ellen, and Wagner, Holger. 2001. “Mutation-selection models solved exactly with methods of statistical mechanics”. GENETICS RESEARCH 78: 93-117.
    PUB
     
  • [20]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378040
    Baake, Ellen. 2001. “Mutation and recombination with tight linkage”. JOURNAL OF MATHEMATICAL BIOLOGY 42: 455-488.
    PUB
     
  • [19]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378046
    Baake, Ellen, and von Haeseler, Arndt. 1999. “Distance measures in terms of substitution processes”. THEORETICAL POPULATION BIOLOGY 55: 166-175.
    PUB
     
  • [18]
    1999 | Sammelwerksbeitrag | PUB-ID: 1927777
    Gabriel, Wilfried, and Baake, Ellen. 1999. “Biological evolution through mutation, selection, and drift: An introductory review”. In in: Ann. Rev. Comp. Phys. VII (D. Stauffer, ed.), pp. 203-264 (World Scientific, Singapore, 2000).
    PUB | arXiv
     
  • [17]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378116
    Baake, Ellen. 1998. “What can and what cannot be inferred from pairwise sequence comparisons?”. MATHEMATICAL BIOSCIENCES 154: 1-21.
    PUB
     
  • [16]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378123
    Wagner, Holger, Baake, Ellen, and Gerisch, Thomas. 1998. “Ising quantum chain and sequence evolution”. JOURNAL OF STATISTICAL PHYSICS 92 (5/6): 1017-1052.
    PUB
     
  • [15]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378127
    Baake, Ellen, Baake, Michael, and Wagner, Holger. 1998. “Quantum mechanics versus classical probabilities in biological evolution”. PHYSICAL REVIEW E 57 (1): 1191-1192.
    PUB
     
  • [14]
    1997 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2378442
    Wagner, Holger, and Baake, Ellen. 1997. “Ising quantum chain and biological evolution”. In Physical Applications and Mathematical Aspects of Geometry, Groups and Algebras, ed. H.-D. Doebner, P. Nattermann, and W. Scherer, II:821-825. Singapore: World Scientific.
    PUB
     
  • [13]
    1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378376
    Baake, Ellen, Baake, Michael, and Wagner, Holger. 1997. “Ising quantum chain is equivalent to a model of biological evolution”. PHYSICAL REVIEW LETTERS 78: 559-562.
    PUB
     
  • [12]
    1997 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2378438
    Baake, Ellen. 1997. “Diploid sequence space, dominance, and evolution”. In Advances in Mathematical Population Dynamics - Molecules, Cells and Man, ed. O. Arino, D. Axelrod, and M. Kimmel, 1-15. Singapore: World Scientific.
    PUB
     
  • [11]
    1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378139
    Baake, Ellen, and Wiehe, Thomas. 1997. “Bifurcations in haploid and diploid sequence space models”. JOURNAL OF MATHEMATICAL BIOLOGY 35 (3): 321-343.
    PUB
     
  • [10]
    1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378431
    Baake, Ellen. 1995. “Diploid models on sequence space”. JOURNAL OF BIOLOGICAL SYSTEMS 3: 343-349.
    PUB
     
  • [9]
    1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378422
    Wiehe, Thomas, Baake, Ellen, and Schuster, Peter. 1995. “Error propagation in reproduction of diploid organisms. A case study on single peaked landscapes”. JOURNAL OF THEORETICAL BIOLOGY 177: 1-15.
    PUB
     
  • [8]
    1993 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775603 OA
    Baake, Michael, Baake, Ellen, and Eich, E. 1993. “On the role of invariants for the parameter estimation problem in Hamiltonian systems”. Physics letters 180 (1-2): 74-82.
    PUB | PDF | DOI | WoS
     
  • [7]
    1992 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775599 OA
    Baake, Ellen, Baake, Michael, Bock, H. G., and Briggs, K. M. 1992. “Fitting ordinary differential equations to chaotic data”. Physical Review A 45 (8): 5524-5529.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    1992 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775596 OA
    Baake, Ellen, and Schlöder, Johannes P. 1992. “Modelling the fast fluorescence rise of photosynthesis”. Bulletin of mathematical biology 54 (6): 999-1021.
    PUB | PDF | DOI | WoS
     
  • [5]
    1990 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2378459
    Baake, Ellen, and Strasser, R.J. 1990. “A differential equation model for the description of the fast fluorescence rise (O-I-D-P-transient) in leaves”. In Current Research in Photosynthesis, ed. M. Baltscheffsky, 443-449. Dordrecht: Kluwer.
    PUB
     
  • [4]
    1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775593 OA
    Pfündel, Erhard, and Baake, Ellen. 1990. “A quantitative description of fluorescence excitation spectra in intact bean leaves greened under intermittent light”. Photosynthesis Research 26 (1): 19-28.
    PUB | PDF | DOI
     
  • [3]
    1989 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2378482
    Baake, Ellen, and Strasser, R.J. 1989. “A differential equation model for the description of the fast fluorescence rise (O-I-D-P-transient) in leaves”. PHYSIOLOGIA PLANTARUM 76.
    PUB
     
  • [2]
    1987 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785358 OA
    Buff, Ellen, Baake, Michael, and Sievers, Andreas. 1987. “An Empirical Function for the Description of Root Growth”. Plant Physiology 83 (3): 685-690.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    1986 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785355 OA
    Baake, Michael, and Buff, Ellen. 1986. “From cell growth to root growth”. Journal of Theoretical Biology 123 (3): 347-365.
    PUB | PDF | DOI | WoS
     

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