PUB - Publikationen an der Universität Bielefeld

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• [41]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311

  MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data
  Tzanakis K, Nattkemper TW, Niehaus K, Albaum S (2022)
  BMC Bioinformatics 23(1): 267.

  PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [40]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965966

  Proteome Turnover Analysis in Haloferax volcanii by a Heavy Isotope Multilabeling Approach
  Paggi RA, Albaum S, Poetsch A, Cerletti M (2022)
  Methods in Molecular Biology 2522: 267-286.

  PUB | DOI | PubMed | Europe PMC
   
• [39]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960640

  Functional genomics uncovers pleiotropic role of rhomboids in Corynebacterium glutamicum
  Luenenschloss A, ter Veld F, Albaum S, Neddermann T, Wendisch VF, Poetsch A (2022)
  Frontiers in Microbiology 13: 771968.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [38]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358

  A targeted transcriptomics approach for the determination of mixture effects of pesticides
  Lichtenstein D, Mentz A, Sprenger H, Schmidt FF, Albaum S, Kalinowski J, Planatscher H, Joos TO, Poetz O, Braeuning A (2021)
  Toxicology 460: 152892.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [37]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949076

  Distinct Myocardial Transcriptomic Profiles of Cardiomyopathies Stratified by the Mutant Genes
  Sielemann K, Elbeck Z, Gärtner A, Brodehl A, Stanasiuk C, Fox H, Paluszkiewicz L, Tiesmeier J, Wlost S, Gummert J, Albaum S, et al. (2020)
  Genes 11(12): 1430.

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• [36]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242

  Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells
  Lichtenstein D, Mentz A, Schmidt FF, Luckert C, Buhrke T, Marx-Stoelting P, Kalinowski J, Albaum S, Joos TO, Poetz O, Braeuning A (2020)
  Food and Chemical Toxicology 145: 111690.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [35]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248

  RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS
  Braeuning A, Mentz A, Schmidt FF, Albaum S, Planatscher H, Kalinowski J, Joos TO, Poetz O, Lichtenstein D (2020)
  EXCLI JOURNAL 19: 135-153.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [34]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490

  Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies.
  Seeger B, Mentz A, Knebel C, Schmidt F, Bednarz H, Niehaus K, Albaum S, Kalinowski J, Noll T, Steinberg P, Marx-Stoelting P, et al. (2019)
  Archives of toxicology 93(8): 2321-2333.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [33]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518

  Early Response of Sulfolobus acidocaldarius to Nutrient Limitation
  Bischof LF, Haurat MF, Hoffmann L, Albersmeier A, Wolf J, Neu A, Pham TK, Albaum S, Jakobi T, Schouten S, Neumann-Schaal M, et al. (2019)
  FRONTIERS IN MICROBIOLOGY 9: 3201.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [32]
  

  2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250

  Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS
  Schelletter L, Albaum S, Walter S, Noll T, Hoffrogge R (2019)
  Applied microbiology and biotechnology 103(19): 8127-8143.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [31]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330

  An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA
  Robledo M, Schlueter J-P, Loehr LO, Linne U, Albaum S, Jimenez-Zurdo JI, Becker A (2018)
  FRONTIERS IN MICROBIOLOGY 9: 14.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [30]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012

  Flexible metagenome analysis using the MGX framework
  Jaenicke S, Albaum S, Blumenkamp P, Linke B, Stoye J, Goesmann A (2018)
  Microbiome 6(1): 76.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [29]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065

  LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii
  Cerletti M, Paggi R, Troetschel C, Celeste Ferrari M, Guevara CR, Albaum S, Poetsch A, De Castro R (2018)
  JOURNAL OF PROTEOME RESEARCH 17(3): 1158-1171.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [28]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556

  Bioinformatics for NGS-based metagenomics and the application to biogas research
  Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum S, Schlüter A, Goesmann A, Sczyrba A, et al. (2017)
  Journal of Biotechnology 261(SI): 10-23.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [27]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911396

  Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS
  Müller B, Heinrich C, Jabs W, Kaspar-Schönefeld S, Schmidt A, Wehmeier N, Albaum S, Baessmann C, Noll T, Hoffrogge R (2017)
  Journal of Biotechnology 257: 87-98.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [26]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916543

  Proteomics of FACS-sorted heterogeneous Corynebacterium glutamicum populations
  Harst A, Albaum S, Bojarzyn T, Trötschel C, Poetsch A (2017)
  Journal of Proteomics 160: 1-7.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676

  Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
  Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
  Genome Announcements 4(6): e01334-16.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [24]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705

  Omics Fusion - A Platform for Integrative Analysis of Omics Data
  Brink B, Seidel A, Kleinbölting N, Nattkemper TW, Albaum S (2016)
  Journal of Integrative Bioinformatics 13(4: SI): 296.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [23]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234

  An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant
  Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
  Journal of Biotechnology 231: 268-279.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035

  Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum
  Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
  Genome announcements 3(4): e00680-15.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138

  Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform
  Kessler N, Bonte A, Albaum S, Mäder P, Messmer M, Goesmann A, Niehaus K, Langenkämper G, Nattkemper TW (2015)
  Frontiers in Bioinformatics and Computational Biology 3: 35.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297

  Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates
  Wibberg D, Rupp O, Blom J, Jelonek L, Kröber M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Pühler A, Schlüter A (2015)
  Plos One 10(12): e0144769.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718767

  2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects
  Wingens M, Gätgens J, Schmidt A, Albaum S, Büntemeyer H, Noll T, Hoffrogge R (2015)
  Journal of Biotechnology 201: 86-97.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122

  Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)
  Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
  Journal of Biotechnology 204: 45-46.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819

  Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells
  Wippermann A, Klausing S, Rupp O, Albaum S, Büntemeyer H, Noll T, Hoffrogge R (2014)
  Applied Microbiology and Biotechnology 98(2): 579-589.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773

  GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers
  Jünemann S, Prior K, Albersmeier A, Albaum S, Kalinowski J, Goesmann A, Stoye J, Harmsen D (2014)
  PLOS ONE 9(9): e107014.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029

  ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis
  Kessler N, Walter F, Persicke M, Albaum S, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW (2014)
  PLoS ONE 9(11): e113909.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552

  Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)
  Becker J, Timmermann C, Rupp O, Albaum S, Brinkrolf K, Goesmann A, Pühler A, Tauch A, Noll T (2014)
  Journal of biotechnology 178: 23-31.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776

  Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria
  Trötschel C, Albaum S, Poetsch A (2013)
  Microbial biotechnology 6(6): 708-719.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2012 | Bielefelder E-Dissertation | PUB-ID: 2547531

  QuPE - An integrated bioinformatics platform for quantitative proteomics
  Albaum S (2012)
  Bielefeld: Universität Bielefeld.

  PUB | PDF
   
• [11]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232

  Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation
  Trötschel C, Albaum S, Wolff D, Schröder S, Goesmann A, Nattkemper TW, Poetsch A (2012)
  Molecular & Cellular Proteomics 11(8): 512-526.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [10]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063

  A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
  Albaum S, Hahne H, Otto A, Haußmann U, Becher D, Poetsch A, Goesmann A, Nattkemper TW (2011)
  Proteome Science 9(1): 30.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800

  Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii
  Toepel J, Albaum S, Arvidsson S, Goesmann A, La Russa M, Rogge K, Kruse O (2011)
  BMC Genomics 12(1): 579.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813

  Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
  Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
  BMC Systems Biology 3(1): 82.

  PUB | PDF | DOI | PubMed | Europe PMC
   
• [7]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187

  EDGAR: a software framework for the comparative analysis of prokaryotic genomes
  Blom J, Albaum S, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M, Goesmann A (2009)
  BMC Bioinformatics 10(1): 154.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321

  EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
  Dondrup M, Albaum S, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Kuester H, Linke B, Mertens D, Mittard-Runte V, et al. (2009)
  BMC Bioinformatics 10(1): 50.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531

  Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
  Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
  Bioinformatics 25(23): 3128-3134.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699

  MeltDB: a software platform for the analysis and integration of metabolomics experiment data
  Neuweger H, Albaum S, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A (2008)
  Bioinformatics 24(23): 2726-2732.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381

  ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)
  Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
  In: HUPO 7th Annual World Congress.

  PUB
   
• [2]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754

  CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
  Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, et al. (2007)
  BMC Systems Biology 1(1): 55.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [1]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302

  BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
  Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, et al. (2005)
  Bioinformatics 21(7): 853-859.

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