27 Publications

Mark all

[27]
2017 | Journal Article | PUB-ID: 2913556
Bioinformatics for NGS-based metagenomics and the application to biogas research
Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum S, Schlüter A, Goesmann A, Sczyrba A, et al. (2017)
Journal of Biotechnology 261: 10-23.
PUB | DOI
 
[26]
2017 | Journal Article | PUB-ID: 2911396
Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS
Müller B, Heinrich C, Jabs W, Kaspar-Schönefeld S, Schmidt A, Wehmeier N, Albaum S, Baessmann C, Noll T, Hoffrogge R (2017)
Journal of Biotechnology.
PUB | DOI
 
[25]
2016 | Journal Article | PUB-ID: 2907705
Omics Fusion - A Platform for Integrative Analysis of Omics Data
Brink B, Seidel A, Kleinbölting N, Nattkemper TW, Albaum S (2016)
Journal of Integrative Bioinformatics 13(4: SI): 296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2016 | Journal Article | PUB-ID: 2907676
Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16.
PUB | PDF | DOI
 
[23]
2016 | Journal Article | PUB-ID: 2904234
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 268-279.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2015 | Journal Article | PUB-ID: 2761035
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4).
PUB | DOI | PubMed | Europe PMC
 
[21]
2015 | Journal Article | PUB-ID: 2758122
Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[20]
2015 | Journal Article | PUB-ID: 2722138
Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform
Kessler N, Bonte A, Albaum S, Mäder P, Messmer M, Goesmann A, Niehaus K, Langenkämper G, Nattkemper TW (2015)
Frontiers in Bioinformatics and Computational Biology 3: 35.
PUB | PDF | DOI
 
[19]
2015 | Journal Article | PUB-ID: 2901297
Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates
Wibberg D, Rupp O, Blom J, Jelonek L, Kröber M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Pühler A, Schlüter A (2015)
Plos One 10(12): e0144769.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[18]
2015 | Journal Article | PUB-ID: 2718767
2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects
Wingens M, Gätgens J, Schmidt A, Albaum S, Büntemeyer H, Noll T, Hoffrogge R (2015)
Journal of Biotechnology 201: 86-97.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2014 | Journal Article | PUB-ID: 2656819
Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells
Wippermann A, Klausing S, Rupp O, Albaum S, Büntemeyer H, Noll T, Hoffrogge R (2014)
Applied Microbiology and Biotechnology 98(2): 579-589.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2014 | Journal Article | PUB-ID: 2706029
ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis
Kessler N, Walter F, Persicke M, Albaum S, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW (2014)
PLoS ONE 9(11): e113909.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[15]
2014 | Journal Article | PUB-ID: 2676552
Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)
Becker J, Timmermann C, Rupp O, Albaum S, Brinkrolf K, Goesmann A, Pühler A, Tauch A, Noll T (2014)
Journal of biotechnology 178: 23-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2014 | Journal Article | PUB-ID: 2689773
GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers
Jünemann S, Prior K, Albersmeier A, Albaum S, Kalinowski J, Goesmann A, Stoye J, Harmsen D (2014)
PLOS ONE 9(9): e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2013 | Journal Article | PUB-ID: 2561776
Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria
Trötschel C, Albaum S, Poetsch A (2013)
Microbial biotechnology: 708-719.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
2012 | Bielefeld Dissertation | PUB-ID: 2547531
QuPE - An integrated bioinformatics platform for quantitative proteomics
Albaum S (2012)
Bielefeld: Universität Bielefeld.
PUB | PDF
 
[11]
2012 | Journal Article | PUB-ID: 2498232
Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation
Trötschel C, Albaum S, Wolff D, Schröder S, Goesmann A, Nattkemper TW, Poetsch A (2012)
Molecular & Cellular Proteomics 11(8): 512-526.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2011 | Journal Article | PUB-ID: 2300063
A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
Albaum S, Hahne H, Otto A, Haußmann U, Becher D, Poetsch A, Goesmann A, Nattkemper TW (2011)
Proteome Science 9(1): 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[9]
2011 | Journal Article | PUB-ID: 2451800
Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii
Toepel J, Albaum S, Arvidsson S, Goesmann A, La Russa M, Rogge K, Kruse O (2011)
BMC Genomics 12(1): 579-589.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[8]
2009 | Journal Article | PUB-ID: 1783187
EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom J, Albaum S, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M, Goesmann A (2009)
BMC Bioinformatics 10(1): 154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[7]
2009 | Journal Article | PUB-ID: 1783813
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
BMC Systems Biology 3(1): 82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[6]
2009 | Journal Article | PUB-ID: 1635321
EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup M, Albaum S, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Kuester H, Linke B, Mertens D, Mittard-Runte V, et al. (2009)
BMC Bioinformatics 10(1): 50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[5]
2009 | Journal Article | PUB-ID: 1589531
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
Bioinformatics 25(23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2008 | Journal Article | PUB-ID: 1636699
MeltDB: a software platform for the analysis and integration of metabolomics experiment data
Neuweger H, Albaum S, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A (2008)
Bioinformatics 24(23): 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2008 | Conference Paper | PUB-ID: 2018381
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)
Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
In: HUPO 7th Annual World Congress.
PUB
 
[2]
2007 | Journal Article | PUB-ID: 1783754
CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, et al. (2007)
BMC Systems Biology 1(1): 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[1]
2005 | Journal Article | PUB-ID: 1773302
BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, et al. (2005)
Bioinformatics 21(7): 853-859.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 

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27 Data Publications

Mark all

[27]
2017 | Journal Article | PUB-ID: 2913556
Bioinformatics for NGS-based metagenomics and the application to biogas research
Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum S, Schlüter A, Goesmann A, Sczyrba A, et al. (2017)
Journal of Biotechnology 261: 10-23.
PUB | DOI
 
[26]
2017 | Journal Article | PUB-ID: 2911396
Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS
Müller B, Heinrich C, Jabs W, Kaspar-Schönefeld S, Schmidt A, Wehmeier N, Albaum S, Baessmann C, Noll T, Hoffrogge R (2017)
Journal of Biotechnology.
PUB | DOI
 
[25]
2016 | Journal Article | PUB-ID: 2907705
Omics Fusion - A Platform for Integrative Analysis of Omics Data
Brink B, Seidel A, Kleinbölting N, Nattkemper TW, Albaum S (2016)
Journal of Integrative Bioinformatics 13(4: SI): 296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2016 | Journal Article | PUB-ID: 2907676
Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16.
PUB | PDF | DOI
 
[23]
2016 | Journal Article | PUB-ID: 2904234
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 268-279.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2015 | Journal Article | PUB-ID: 2761035
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4).
PUB | DOI | PubMed | Europe PMC
 
[21]
2015 | Journal Article | PUB-ID: 2758122
Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[20]
2015 | Journal Article | PUB-ID: 2722138
Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform
Kessler N, Bonte A, Albaum S, Mäder P, Messmer M, Goesmann A, Niehaus K, Langenkämper G, Nattkemper TW (2015)
Frontiers in Bioinformatics and Computational Biology 3: 35.
PUB | PDF | DOI
 
[19]
2015 | Journal Article | PUB-ID: 2901297
Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates
Wibberg D, Rupp O, Blom J, Jelonek L, Kröber M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Pühler A, Schlüter A (2015)
Plos One 10(12): e0144769.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[18]
2015 | Journal Article | PUB-ID: 2718767
2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects
Wingens M, Gätgens J, Schmidt A, Albaum S, Büntemeyer H, Noll T, Hoffrogge R (2015)
Journal of Biotechnology 201: 86-97.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2014 | Journal Article | PUB-ID: 2656819
Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells
Wippermann A, Klausing S, Rupp O, Albaum S, Büntemeyer H, Noll T, Hoffrogge R (2014)
Applied Microbiology and Biotechnology 98(2): 579-589.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2014 | Journal Article | PUB-ID: 2706029
ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis
Kessler N, Walter F, Persicke M, Albaum S, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW (2014)
PLoS ONE 9(11): e113909.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[15]
2014 | Journal Article | PUB-ID: 2676552
Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)
Becker J, Timmermann C, Rupp O, Albaum S, Brinkrolf K, Goesmann A, Pühler A, Tauch A, Noll T (2014)
Journal of biotechnology 178: 23-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2014 | Journal Article | PUB-ID: 2689773
GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers
Jünemann S, Prior K, Albersmeier A, Albaum S, Kalinowski J, Goesmann A, Stoye J, Harmsen D (2014)
PLOS ONE 9(9): e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2013 | Journal Article | PUB-ID: 2561776
Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria
Trötschel C, Albaum S, Poetsch A (2013)
Microbial biotechnology: 708-719.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
2012 | Bielefeld Dissertation | PUB-ID: 2547531
QuPE - An integrated bioinformatics platform for quantitative proteomics
Albaum S (2012)
Bielefeld: Universität Bielefeld.
PUB | PDF
 
[11]
2012 | Journal Article | PUB-ID: 2498232
Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation
Trötschel C, Albaum S, Wolff D, Schröder S, Goesmann A, Nattkemper TW, Poetsch A (2012)
Molecular & Cellular Proteomics 11(8): 512-526.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2011 | Journal Article | PUB-ID: 2300063
A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
Albaum S, Hahne H, Otto A, Haußmann U, Becher D, Poetsch A, Goesmann A, Nattkemper TW (2011)
Proteome Science 9(1): 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[9]
2011 | Journal Article | PUB-ID: 2451800
Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii
Toepel J, Albaum S, Arvidsson S, Goesmann A, La Russa M, Rogge K, Kruse O (2011)
BMC Genomics 12(1): 579-589.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[8]
2009 | Journal Article | PUB-ID: 1783187
EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom J, Albaum S, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M, Goesmann A (2009)
BMC Bioinformatics 10(1): 154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[7]
2009 | Journal Article | PUB-ID: 1783813
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
BMC Systems Biology 3(1): 82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[6]
2009 | Journal Article | PUB-ID: 1635321
EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup M, Albaum S, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Kuester H, Linke B, Mertens D, Mittard-Runte V, et al. (2009)
BMC Bioinformatics 10(1): 50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[5]
2009 | Journal Article | PUB-ID: 1589531
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
Bioinformatics 25(23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2008 | Journal Article | PUB-ID: 1636699
MeltDB: a software platform for the analysis and integration of metabolomics experiment data
Neuweger H, Albaum S, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A (2008)
Bioinformatics 24(23): 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2008 | Conference Paper | PUB-ID: 2018381
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)
Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
In: HUPO 7th Annual World Congress.
PUB
 
[2]
2007 | Journal Article | PUB-ID: 1783754
CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, et al. (2007)
BMC Systems Biology 1(1): 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[1]
2005 | Journal Article | PUB-ID: 1773302
BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, et al. (2005)
Bioinformatics 21(7): 853-859.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 

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