PUB - Publikationen an der Universität Bielefeld

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• [41]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311

  Tzanakis, K., Nattkemper, T.W., Niehaus, K., Albaum, S.: MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data. BMC Bioinformatics. 23, : 267 (2022).

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• [40]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965966

  Paggi, R.A., Albaum, S., Poetsch, A., Cerletti, M.: Proteome Turnover Analysis in Haloferax volcanii by a Heavy Isotope Multilabeling Approach. Methods in Molecular Biology. 2522, 267-286 (2022).

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• [39]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960640

  Luenenschloss, A., ter Veld, F., Albaum, S., Neddermann, T., Wendisch, V.F., Poetsch, A.: Functional genomics uncovers pleiotropic role of rhomboids in Corynebacterium glutamicum. Frontiers in Microbiology. 13, : 771968 (2022).

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• [38]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358

  Lichtenstein, D., Mentz, A., Sprenger, H., Schmidt, F.F., Albaum, S., Kalinowski, J., Planatscher, H., Joos, T.O., Poetz, O., Braeuning, A.: A targeted transcriptomics approach for the determination of mixture effects of pesticides. Toxicology. 460, : 152892 (2021).

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• [37]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949076

  Sielemann, K., Elbeck, Z., Gärtner, A., Brodehl, A., Stanasiuk, C., Fox, H., Paluszkiewicz, L., Tiesmeier, J., Wlost, S., Gummert, J., Albaum, S., Sielemann, J., Knöll, R., Milting, H.: Distinct Myocardial Transcriptomic Profiles of Cardiomyopathies Stratified by the Mutant Genes. Genes. 11, : 1430 (2020).

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• [36]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242

  Lichtenstein, D., Mentz, A., Schmidt, F.F., Luckert, C., Buhrke, T., Marx-Stoelting, P., Kalinowski, J., Albaum, S., Joos, T.O., Poetz, O., Braeuning, A.: Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells. Food and Chemical Toxicology. 145, : 111690 (2020).

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• [35]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248

  Braeuning, A., Mentz, A., Schmidt, F.F., Albaum, S., Planatscher, H., Kalinowski, J., Joos, T.O., Poetz, O., Lichtenstein, D.: RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS. EXCLI JOURNAL. 19, 135-153 (2020).

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• [34]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490

  Seeger, B., Mentz, A., Knebel, C., Schmidt, F., Bednarz, H., Niehaus, K., Albaum, S., Kalinowski, J., Noll, T., Steinberg, P., Marx-Stoelting, P., Heise, T.: Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies. Archives of toxicology. 93, 2321-2333 (2019).

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• [33]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518

  Bischof, L.F., Haurat, M.F., Hoffmann, L., Albersmeier, A., Wolf, J., Neu, A., Pham, T.K., Albaum, S., Jakobi, T., Schouten, S., Neumann-Schaal, M., Wright, P.C., Kalinowski, J., Siebers, B., Albers, S.-V.: Early Response of Sulfolobus acidocaldarius to Nutrient Limitation. FRONTIERS IN MICROBIOLOGY. 9, : 3201 (2019).

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• [32]
  

  2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250

  Schelletter, L., Albaum, S., Walter, S., Noll, T., Hoffrogge, R.: Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS. Applied microbiology and biotechnology. 103, 8127-8143 (2019).

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• [31]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330

  Robledo, M., Schlueter, J.-P., Loehr, L.O., Linne, U., Albaum, S., Jimenez-Zurdo, J.I., Becker, A.: An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA. FRONTIERS IN MICROBIOLOGY. 9, : 14 (2018).

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• [30]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012

  Jaenicke, S., Albaum, S., Blumenkamp, P., Linke, B., Stoye, J., Goesmann, A.: Flexible metagenome analysis using the MGX framework. Microbiome. 6, : 76 (2018).

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• [29]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065

  Cerletti, M., Paggi, R., Troetschel, C., Celeste Ferrari, M., Guevara, C.R., Albaum, S., Poetsch, A., De Castro, R.: LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii. JOURNAL OF PROTEOME RESEARCH. 17, 1158-1171 (2018).

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• [28]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556

  Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., Albaum, S., Schlüter, A., Goesmann, A., Sczyrba, A., Stoye, J.: Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology. 261, 10-23 (2017).

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• [27]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911396

  Müller, B., Heinrich, C., Jabs, W., Kaspar-Schönefeld, S., Schmidt, A., Wehmeier, N., Albaum, S., Baessmann, C., Noll, T., Hoffrogge, R.: Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS. Journal of Biotechnology. 257, 87-98 (2017).

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• [26]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916543

  Harst, A., Albaum, S., Bojarzyn, T., Trötschel, C., Poetsch, A.: Proteomics of FACS-sorted heterogeneous Corynebacterium glutamicum populations. Journal of Proteomics. 160, 1-7 (2017).

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• [25]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705

  Brink, B., Seidel, A., Kleinbölting, N., Nattkemper, T.W., Albaum, S.: Omics Fusion - A Platform for Integrative Analysis of Omics Data. Journal of Integrative Bioinformatics. 13, : 296 (2016).

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• [24]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676

  Jaenicke, S., Bunk, B., Wibberg, D., Spröer, C., Hersemann, L., Blom, J., Winkler, A., Schatschneider, S., Albaum, S., Kölliker, R., Goesmann, A., Pühler, A., Overmann, J., Vorhölter, F.-J.: Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T). Genome Announcements. 4, : e01334-16 (2016).

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• [23]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234

  Ortseifen, V., Stolze, Y., Maus, I., Sczyrba, A., Bremges, A., Albaum, S., Jaenicke, S., Fracowiak, J., Pühler, A., Schlüter, A.: An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology. 231, 268-279 (2016).

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• [22]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035

  Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., Albersmeier, A., Albaum, S., Goesmann, A., Zange, S., Heesemann, J., Pühler, A., Hogardt, M., Vorhölter, F.-J.: Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements. 3, : e00680-15 (2015).

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• [21]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138

  Kessler, N., Bonte, A., Albaum, S., Mäder, P., Messmer, M., Goesmann, A., Niehaus, K., Langenkämper, G., Nattkemper, T.W.: Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology. 3, : 35 (2015).

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• [20]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297

  Wibberg, D., Rupp, O., Blom, J., Jelonek, L., Kröber, M., Verwaaijen, B., Goesmann, A., Albaum, S., Grosch, R., Pühler, A., Schlüter, A.: Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates. Plos One. 10, : e0144769 (2015).

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• [19]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718767

  Wingens, M., Gätgens, J., Schmidt, A., Albaum, S., Büntemeyer, H., Noll, T., Hoffrogge, R.: 2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects. Journal of Biotechnology. 201, 86-97 (2015).

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• [18]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122

  Wibberg, D., Alkhateeb, R., Winkler, A., Albersmeier, A., Schatschneider, S., Albaum, S., Niehaus, K., Hublik, G., Pühler, A., Vorhölter, F.-J.: Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951). Journal of Biotechnology. 204, 45-46 (2015).

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• [17]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819

  Wippermann, A., Klausing, S., Rupp, O., Albaum, S., Büntemeyer, H., Noll, T., Hoffrogge, R.: Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells. Applied Microbiology and Biotechnology. 98, 579-589 (2014).

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• [16]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773

  Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J., Harmsen, D.: GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE. 9, : e107014 (2014).

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• [15]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029

  Kessler, N., Walter, F., Persicke, M., Albaum, S., Kalinowski, J., Goesmann, A., Niehaus, K., Nattkemper, T.W.: ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE. 9, : e113909 (2014).

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• [14]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552

  Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., Tauch, A., Noll, T.: Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology. 178, 23-31 (2014).

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• [13]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776

  Trötschel, C., Albaum, S., Poetsch, A.: Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria. Microbial biotechnology. 6, 708-719 (2013).

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• [12]
  

  2012 | Bielefelder E-Dissertation | PUB-ID: 2547531

  Albaum, S.: QuPE - An integrated bioinformatics platform for quantitative proteomics. Universität Bielefeld, Bielefeld (2012).

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• [11]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232

  Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T.W., Poetsch, A.: Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics. 11, 512-526 (2012).

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• [10]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063

  Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A., Nattkemper, T.W.: A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science. 9, : 30 (2011).

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• [9]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800

  Toepel, J., Albaum, S., Arvidsson, S., Goesmann, A., La Russa, M., Rogge, K., Kruse, O.: Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics. 12, : 579 (2011).

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• [8]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813

  Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A.T., Winnebald, J., Schneider, J., Kalinowski, J., Goesmann, A.: Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology. 3, : 82 (2009).

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• [7]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187

  Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F.-J., Zakrzewski, M., Goesmann, A.: EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics. 10, : 154 (2009).

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• [6]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321

  Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C.K., Kuester, H., Linke, B., Mertens, D., Mittard-Runte, V., Neuweger, H., Runte, K.J., Tauch, A., Tille, F., Pühler, A., Goesmann, A.: EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics. 10, : 50 (2009).

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• [5]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531

  Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T.W., Goesmann, A.: Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics. 25, 3128-3134 (2009).

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• [4]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699

  Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., Goesmann, A.: MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics. 24, 2726-2732 (2008).

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• [3]
  

  2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381

  Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T.W., Goesmann, A.: ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). HUPO 7th Annual World Congress. (2008).

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• [2]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754

  Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A.T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., Weile, J., Goesmann, A.: CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology. 1, : 55 (2007).

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• [1]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302

  Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., Pühler, A., Pfeiffer, F., Raddatz, G., Stoye, J., Meyer, F., Schuster, S.C.: BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics. 21, 853-859 (2005).

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