PUB - Publikationen an der Universität Bielefeld

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• [41]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311

  Tzanakis, K., et al., 2022. MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data. BMC Bioinformatics, 23(1): 267.

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• [40]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965966

  Paggi, R.A., et al., 2022. Proteome Turnover Analysis in Haloferax volcanii by a Heavy Isotope Multilabeling Approach. Methods in Molecular Biology, 2522, p 267-286.

  PUB | DOI | PubMed | Europe PMC
   
• [39]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960640

  Luenenschloss, A., et al., 2022. Functional genomics uncovers pleiotropic role of rhomboids in Corynebacterium glutamicum. Frontiers in Microbiology, 13: 771968.

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• [38]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358

  Lichtenstein, D., et al., 2021. A targeted transcriptomics approach for the determination of mixture effects of pesticides. Toxicology, 460: 152892.

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• [37]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949076

  Sielemann, K., et al., 2020. Distinct Myocardial Transcriptomic Profiles of Cardiomyopathies Stratified by the Mutant Genes. Genes, 11(12): 1430.

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• [36]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242

  Lichtenstein, D., et al., 2020. Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells. Food and Chemical Toxicology, 145: 111690.

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• [35]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248

  Braeuning, A., et al., 2020. RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS. EXCLI JOURNAL, 19, p 135-153.

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• [34]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490

  Seeger, B., et al., 2019. Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies. Archives of toxicology, 93(8), p 2321-2333.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [33]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518

  Bischof, L.F., et al., 2019. Early Response of Sulfolobus acidocaldarius to Nutrient Limitation. FRONTIERS IN MICROBIOLOGY, 9: 3201.

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• [32]
  

  2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250

  Schelletter, L., et al., 2019. Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS. Applied microbiology and biotechnology, 103(19), p 8127-8143.

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• [31]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330

  Robledo, M., et al., 2018. An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA. FRONTIERS IN MICROBIOLOGY, 9: 14.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [30]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012

  Jaenicke, S., et al., 2018. Flexible metagenome analysis using the MGX framework. Microbiome, 6(1): 76.

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• [29]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065

  Cerletti, M., et al., 2018. LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii. JOURNAL OF PROTEOME RESEARCH, 17(3), p 1158-1171.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [28]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556

  Jünemann, S., et al., 2017. Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology, 261(SI), p 10-23.

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• [27]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911396

  Müller, B., et al., 2017. Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS. Journal of Biotechnology, 257, p 87-98.

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• [26]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916543

  Harst, A., et al., 2017. Proteomics of FACS-sorted heterogeneous Corynebacterium glutamicum populations. Journal of Proteomics, 160, p 1-7.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705

  Brink, B., et al., 2016. Omics Fusion - A Platform for Integrative Analysis of Omics Data. Journal of Integrative Bioinformatics, 13(4: SI): 296.

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• [24]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676

  Jaenicke, S., et al., 2016. Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T). Genome Announcements, 4(6): e01334-16.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [23]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234

  Ortseifen, V., et al., 2016. An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology, 231, p 268-279.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035

  Arnold, M., et al., 2015. Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements, 3(4): e00680-15.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138

  Kessler, N., et al., 2015. Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology, 3: 35.

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• [20]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297

  Wibberg, D., et al., 2015. Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates. Plos One, 10(12): e0144769.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718767

  Wingens, M., et al., 2015. 2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects. Journal of Biotechnology, 201, p 86-97.

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• [18]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122

  Wibberg, D., et al., 2015. Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951). Journal of Biotechnology, 204, p 45-46.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819

  Wippermann, A., et al., 2014. Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells. Applied Microbiology and Biotechnology, 98(2), p 579-589.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773

  Jünemann, S., et al., 2014. GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE, 9(9): e107014.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029

  Kessler, N., et al., 2014. ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE, 9(11): e113909.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552

  Becker, J., et al., 2014. Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology, 178, p 23-31.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776

  Trötschel, C., Albaum, S., & Poetsch, A., 2013. Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria. Microbial biotechnology, 6(6), p 708-719.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2012 | Bielefelder E-Dissertation | PUB-ID: 2547531

  Albaum, S., 2012. QuPE - An integrated bioinformatics platform for quantitative proteomics, Bielefeld: Universität Bielefeld.

  PUB | PDF
   
• [11]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232

  Trötschel, C., et al., 2012. Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics, 11(8), p 512-526.

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• [10]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063

  Albaum, S., et al., 2011. A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science, 9(1): 30.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800

  Toepel, J., et al., 2011. Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics, 12(1): 579.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813

  Neuweger, H., et al., 2009. Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology, 3(1): 82.

  PUB | PDF | DOI | PubMed | Europe PMC
   
• [7]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187

  Blom, J., et al., 2009. EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics, 10(1): 154.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321

  Dondrup, M., et al., 2009. EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics, 10(1): 50.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531

  Albaum, S., et al., 2009. Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics, 25(23), p 3128-3134.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699

  Neuweger, H., et al., 2008. MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics, 24(23), p 2726-2732.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381

  Albaum, S., et al., 2008. ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). In HUPO 7th Annual World Congress.

  PUB
   
• [2]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754

  Neuweger, H., et al., 2007. CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology, 1(1): 55.

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• [1]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302

  Bartels, D., et al., 2005. BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics, 21(7), p 853-859.

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