Stefan Albaum

stefan.albaum@uni-bielefeld.de
ORCID logo https://orcid.org/0000-0002-1827-9914

PEVZ-ID
181902

41 Publikationen

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  • [41]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311 OA
    Tzanakis K, Nattkemper TW, Niehaus K, Albaum S (2022)
    MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data.
    BMC Bioinformatics 23(1): 267.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [40]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965966
    Paggi RA, Albaum S, Poetsch A, Cerletti M (2022)
    Proteome Turnover Analysis in Haloferax volcanii by a Heavy Isotope Multilabeling Approach.
    Methods in Molecular Biology 2522: 267-286.
    PUB | DOI | PubMed | Europe PMC
     
  • [39]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960640 OA
    Luenenschloss A, ter Veld F, Albaum S, Neddermann T, Wendisch VF, Poetsch A (2022)
    Functional genomics uncovers pleiotropic role of rhomboids in Corynebacterium glutamicum.
    Frontiers in Microbiology 13: 771968.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [38]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358
    Lichtenstein D, Mentz A, Sprenger H, Schmidt FF, Albaum S, Kalinowski J, Planatscher H, Joos TO, Poetz O, Braeuning A (2021)
    A targeted transcriptomics approach for the determination of mixture effects of pesticides.
    Toxicology 460: 152892.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [37]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949076 OA
    Sielemann K, Elbeck Z, Gärtner A, Brodehl A, Stanasiuk C, Fox H, Paluszkiewicz L, Tiesmeier J, Wlost S, Gummert J, Albaum S, Sielemann J, Knöll R, Milting H (2020)
    Distinct Myocardial Transcriptomic Profiles of Cardiomyopathies Stratified by the Mutant Genes.
    Genes 11(12): 1430.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [36]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242
    Lichtenstein D, Mentz A, Schmidt FF, Luckert C, Buhrke T, Marx-Stoelting P, Kalinowski J, Albaum S, Joos TO, Poetz O, Braeuning A (2020)
    Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells.
    Food and Chemical Toxicology 145: 111690.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [35]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248
    Braeuning A, Mentz A, Schmidt FF, Albaum S, Planatscher H, Kalinowski J, Joos TO, Poetz O, Lichtenstein D (2020)
    RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS.
    EXCLI JOURNAL 19: 135-153.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [34]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490
    Seeger B, Mentz A, Knebel C, Schmidt F, Bednarz H, Niehaus K, Albaum S, Kalinowski J, Noll T, Steinberg P, Marx-Stoelting P, Heise T (2019)
    Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies.
    Archives of toxicology 93(8): 2321-2333.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [33]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
    Bischof LF, Haurat MF, Hoffmann L, Albersmeier A, Wolf J, Neu A, Pham TK, Albaum S, Jakobi T, Schouten S, Neumann-Schaal M, Wright PC, Kalinowski J, Siebers B, Albers S-V (2019)
    Early Response of Sulfolobus acidocaldarius to Nutrient Limitation.
    FRONTIERS IN MICROBIOLOGY 9: 3201.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [32]
    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250
    Schelletter L, Albaum S, Walter S, Noll T, Hoffrogge R (2019)
    Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS.
    Applied microbiology and biotechnology 103(19): 8127-8143.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [31]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330
    Robledo M, Schlueter J-P, Loehr LO, Linne U, Albaum S, Jimenez-Zurdo JI, Becker A (2018)
    An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA.
    FRONTIERS IN MICROBIOLOGY 9: 14.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [30]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
    Jaenicke S, Albaum S, Blumenkamp P, Linke B, Stoye J, Goesmann A (2018)
    Flexible metagenome analysis using the MGX framework.
    Microbiome 6(1): 76.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [29]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065
    Cerletti M, Paggi R, Troetschel C, Celeste Ferrari M, Guevara CR, Albaum S, Poetsch A, De Castro R (2018)
    LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii.
    JOURNAL OF PROTEOME RESEARCH 17(3): 1158-1171.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [28]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
    Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum S, Schlüter A, Goesmann A, Sczyrba A, Stoye J (2017)
    Bioinformatics for NGS-based metagenomics and the application to biogas research.
    Journal of Biotechnology 261(SI): 10-23.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [27]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911396
    Müller B, Heinrich C, Jabs W, Kaspar-Schönefeld S, Schmidt A, Wehmeier N, Albaum S, Baessmann C, Noll T, Hoffrogge R (2017)
    Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS.
    Journal of Biotechnology 257: 87-98.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [26]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916543
    Harst A, Albaum S, Bojarzyn T, Trötschel C, Poetsch A (2017)
    Proteomics of FACS-sorted heterogeneous Corynebacterium glutamicum populations.
    Journal of Proteomics 160: 1-7.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705 OA
    Brink B, Seidel A, Kleinbölting N, Nattkemper TW, Albaum S (2016)
    Omics Fusion - A Platform for Integrative Analysis of Omics Data.
    Journal of Integrative Bioinformatics 13(4: SI): 296.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [24]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676 OA
    Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, Pühler A, Overmann J, Vorhölter F-J (2016)
    Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T).
    Genome Announcements 4(6): e01334-16.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [23]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
    Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
    An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant.
    Journal of Biotechnology 231: 268-279.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [22]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
    Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M, Vorhölter F-J (2015)
    Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum.
    Genome announcements 3(4): e00680-15.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [21]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138 OA
    Kessler N, Bonte A, Albaum S, Mäder P, Messmer M, Goesmann A, Niehaus K, Langenkämper G, Nattkemper TW (2015)
    Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform.
    Frontiers in Bioinformatics and Computational Biology 3: 35.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [20]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297 OA
    Wibberg D, Rupp O, Blom J, Jelonek L, Kröber M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Pühler A, Schlüter A (2015)
    Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates.
    Plos One 10(12): e0144769.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [19]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718767
    Wingens M, Gätgens J, Schmidt A, Albaum S, Büntemeyer H, Noll T, Hoffrogge R (2015)
    2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects.
    Journal of Biotechnology 201: 86-97.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
    Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
    Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951).
    Journal of Biotechnology 204: 45-46.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [17]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819
    Wippermann A, Klausing S, Rupp O, Albaum S, Büntemeyer H, Noll T, Hoffrogge R (2014)
    Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells.
    Applied Microbiology and Biotechnology 98(2): 579-589.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
    Jünemann S, Prior K, Albersmeier A, Albaum S, Kalinowski J, Goesmann A, Stoye J, Harmsen D (2014)
    GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers.
    PLOS ONE 9(9): e107014.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [15]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029 OA
    Kessler N, Walter F, Persicke M, Albaum S, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW (2014)
    ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis.
    PLoS ONE 9(11): e113909.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
    Becker J, Timmermann C, Rupp O, Albaum S, Brinkrolf K, Goesmann A, Pühler A, Tauch A, Noll T (2014)
    Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.).
    Journal of biotechnology 178: 23-31.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776
    Trötschel C, Albaum S, Poetsch A (2013)
    Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria.
    Microbial biotechnology 6(6): 708-719.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2012 | Bielefelder E-Dissertation | PUB-ID: 2547531 OA
    Albaum S (2012)
    QuPE - An integrated bioinformatics platform for quantitative proteomics.
    Bielefeld: Universität Bielefeld.
    PUB | PDF
     
  • [11]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
    Trötschel C, Albaum S, Wolff D, Schröder S, Goesmann A, Nattkemper TW, Poetsch A (2012)
    Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation.
    Molecular & Cellular Proteomics 11(8): 512-526.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [10]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
    Albaum S, Hahne H, Otto A, Haußmann U, Becher D, Poetsch A, Goesmann A, Nattkemper TW (2011)
    A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study.
    Proteome Science 9(1): 30.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800 OA
    Toepel J, Albaum S, Arvidsson S, Goesmann A, La Russa M, Rogge K, Kruse O (2011)
    Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii.
    BMC Genomics 12(1): 579.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [8]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813 OA
    Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
    Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.
    BMC Systems Biology 3(1): 82.
    PUB | PDF | DOI | PubMed | Europe PMC
     
  • [7]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
    Blom J, Albaum S, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M, Goesmann A (2009)
    EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
    BMC Bioinformatics 10(1): 154.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
    Dondrup M, Albaum S, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Kuester H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A (2009)
    EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data.
    BMC Bioinformatics 10(1): 50.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
    Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
    Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
    Bioinformatics 25(23): 3128-3134.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [4]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
    Neuweger H, Albaum S, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A (2008)
    MeltDB: a software platform for the analysis and integration of metabolomics experiment data.
    Bioinformatics 24(23): 2726-2732.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [3]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
    Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
    ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract).
    In: HUPO 7th Annual World Congress. .
    PUB
     
  • [2]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
    Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A (2007)
    CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
    BMC Systems Biology 1(1): 55.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302 OA
    Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, Meyer F, Schuster SC (2005)
    BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
    Bioinformatics 21(7): 853-859.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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