Stefan Albaum

stefan.albaum@uni-bielefeld.de
ORCID logo https://orcid.org/0000-0002-1827-9914

PEVZ-ID
181902

41 Publikationen

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  • [41]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311 OA
    Tzanakis, K., Nattkemper, T. W., Niehaus, K., & Albaum, S. (2022). MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data. BMC Bioinformatics, 23(1), 267. https://doi.org/10.1186/s12859-022-04793-w
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  • [40]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965966
    Paggi, R. A., Albaum, S., Poetsch, A., & Cerletti, M. (2022). Proteome Turnover Analysis in Haloferax volcanii by a Heavy Isotope Multilabeling Approach. Methods in Molecular Biology, 2522, 267-286. https://doi.org/10.1007/978-1-0716-2445-6_17
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  • [39]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960640 OA
    Luenenschloss, A., ter Veld, F., Albaum, S., Neddermann, T., Wendisch, V. F., & Poetsch, A. (2022). Functional genomics uncovers pleiotropic role of rhomboids in Corynebacterium glutamicum. Frontiers in Microbiology, 13, 771968. https://doi.org/10.3389/fmicb.2022.771968
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  • [38]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358
    Lichtenstein, D., Mentz, A., Sprenger, H., Schmidt, F. F., Albaum, S., Kalinowski, J., Planatscher, H., et al. (2021). A targeted transcriptomics approach for the determination of mixture effects of pesticides. Toxicology, 460, 152892. https://doi.org/10.1016/j.tox.2021.152892
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  • [37]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949076 OA
    Sielemann, K., Elbeck, Z., Gärtner, A., Brodehl, A., Stanasiuk, C., Fox, H., Paluszkiewicz, L., et al. (2020). Distinct Myocardial Transcriptomic Profiles of Cardiomyopathies Stratified by the Mutant Genes. Genes, 11(12), 1430. https://doi.org/10.3390/genes11121430
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  • [36]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242
    Lichtenstein, D., Mentz, A., Schmidt, F. F., Luckert, C., Buhrke, T., Marx-Stoelting, P., Kalinowski, J., et al. (2020). Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells. Food and Chemical Toxicology, 145, 111690. doi:10.1016/j.fct.2020.111690
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  • [35]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248
    Braeuning, A., Mentz, A., Schmidt, F. F., Albaum, S., Planatscher, H., Kalinowski, J., Joos, T. O., et al. (2020). RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS. EXCLI JOURNAL, 19, 135-153. doi:10.17179/excli2019-2005
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  • [34]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490
    Seeger, B., Mentz, A., Knebel, C., Schmidt, F., Bednarz, H., Niehaus, K., Albaum, S., et al. (2019). Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies. Archives of toxicology, 93(8), 2321-2333. doi:10.1007/s00204-019-02502-w
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  • [33]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
    Bischof, L. F., Haurat, M. F., Hoffmann, L., Albersmeier, A., Wolf, J., Neu, A., Pham, T. K., et al. (2019). Early Response of Sulfolobus acidocaldarius to Nutrient Limitation. FRONTIERS IN MICROBIOLOGY, 9, 3201. doi:10.3389/fmicb.2018.03201
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  • [32]
    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250
    Schelletter, L., Albaum, S., Walter, S., Noll, T., & Hoffrogge, R. (2019). Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS. Applied microbiology and biotechnology, 103(19), 8127-8143. doi:10.1007/s00253-019-10020-z
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  • [31]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330
    Robledo, M., Schlueter, J. - P., Loehr, L. O., Linne, U., Albaum, S., Jimenez-Zurdo, J. I., & Becker, A. (2018). An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA. FRONTIERS IN MICROBIOLOGY, 9, 14. doi:10.3389/fmicb.2018.00763
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  • [30]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
    Jaenicke, S., Albaum, S., Blumenkamp, P., Linke, B., Stoye, J., & Goesmann, A. (2018). Flexible metagenome analysis using the MGX framework. Microbiome, 6(1), 76. doi:10.1186/s40168-018-0460-1
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  • [29]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065
    Cerletti, M., Paggi, R., Troetschel, C., Celeste Ferrari, M., Guevara, C. R., Albaum, S., Poetsch, A., et al. (2018). LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii. JOURNAL OF PROTEOME RESEARCH, 17(3), 1158-1171. doi:10.1021/acs.jproteome.7b00809
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  • [28]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
    Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., et al. (2017). Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology, 261(SI), 10-23. doi:10.1016/j.jbiotec.2017.08.012
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  • [27]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911396
    Müller, B., Heinrich, C., Jabs, W., Kaspar-Schönefeld, S., Schmidt, A., Wehmeier, N., Albaum, S., et al. (2017). Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS. Journal of Biotechnology, 257, 87-98. doi:10.1016/j.jbiotec.2017.03.032
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  • [26]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916543
    Harst, A., Albaum, S., Bojarzyn, T., Trötschel, C., & Poetsch, A. (2017). Proteomics of FACS-sorted heterogeneous Corynebacterium glutamicum populations. Journal of Proteomics, 160, 1-7. doi:10.1016/j.jprot.2017.03.010
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  • [25]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705 OA
    Brink, B., Seidel, A., Kleinbölting, N., Nattkemper, T. W., & Albaum, S. (2016). Omics Fusion - A Platform for Integrative Analysis of Omics Data. Journal of Integrative Bioinformatics, 13(4: SI), 296. https://doi.org/10.2390/biecoll-jib-2016-296
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  • [24]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676 OA
    Jaenicke, S., Bunk, B., Wibberg, D., Spröer, C., Hersemann, L., Blom, J., Winkler, A., et al. (2016). Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T). Genome Announcements, 4(6), e01334-16. doi:10.1128/genomea.01334-16
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  • [23]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
    Ortseifen, V., Stolze, Y., Maus, I., Sczyrba, A., Bremges, A., Albaum, S., Jaenicke, S., et al. (2016). An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology, 231, 268-279. doi:10.1016/j.jbiotec.2016.06.014
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  • [22]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
    Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., et al. (2015). Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements, 3(4), e00680-15. doi:10.1128/genomeA.00680-15
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  • [21]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138 OA
    Kessler, N., Bonte, A., Albaum, S., Mäder, P., Messmer, M., Goesmann, A., Niehaus, K., et al. (2015). Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology, 3, 35. doi:10.3389/fbioe.2015.00035
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  • [20]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297 OA
    Wibberg, D., Rupp, O., Blom, J., Jelonek, L., Kröber, M., Verwaaijen, B., Goesmann, A., et al. (2015). Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates. Plos One, 10(12), e0144769. doi:10.1371/journal.pone.0144769
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  • [19]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718767
    Wingens, M., Gätgens, J., Schmidt, A., Albaum, S., Büntemeyer, H., Noll, T., & Hoffrogge, R. (2015). 2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects. Journal of Biotechnology, 201, 86-97. doi:10.1016/j.jbiotec.2014.01.005
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  • [18]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
    Wibberg, D., Alkhateeb, R., Winkler, A., Albersmeier, A., Schatschneider, S., Albaum, S., Niehaus, K., et al. (2015). Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951). Journal of Biotechnology, 204, 45-46. doi:10.1016/j.jbiotec.2015.03.026
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  • [17]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819
    Wippermann, A., Klausing, S., Rupp, O., Albaum, S., Büntemeyer, H., Noll, T., & Hoffrogge, R. (2014). Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells. Applied Microbiology and Biotechnology, 98(2), 579-589. doi:10.1007/s00253-013-5282-2
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  • [16]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
    Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J., et al. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE, 9(9), e107014. doi:10.1371/journal.pone.0107014
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  • [15]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029 OA
    Kessler, N., Walter, F., Persicke, M., Albaum, S., Kalinowski, J., Goesmann, A., Niehaus, K., et al. (2014). ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE, 9(11), e113909. doi:10.1371/journal.pone.0113909
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  • [14]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
    Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology, 178, 23-31. doi:10.1016/j.jbiotec.2014.02.021
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  • [13]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776
    Trötschel, C., Albaum, S., & Poetsch, A. (2013). Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria. Microbial biotechnology, 6(6), 708-719. doi:10.1111/1751-7915.12035
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  • [12]
    2012 | Bielefelder E-Dissertation | PUB-ID: 2547531 OA
    Albaum, S. (2012). QuPE - An integrated bioinformatics platform for quantitative proteomics. Bielefeld: Universität Bielefeld.
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  • [11]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
    Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T. W., & Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics, 11(8), 512-526. doi:10.1074/mcp.M111.014134
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  • [10]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
    Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A., et al. (2011). A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science, 9(1), 30. https://doi.org/10.1186/1477-5956-9-30
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  • [9]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800 OA
    Toepel, J., Albaum, S., Arvidsson, S., Goesmann, A., La Russa, M., Rogge, K., & Kruse, O. (2011). Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics, 12(1), 579. doi:10.1186/1471-2164-12-579
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  • [8]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813 OA
    Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Winnebald, J., et al. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology, 3(1), 82. https://doi.org/10.1186/1752-0509-3-82
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  • [7]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
    Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., & Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics, 10(1), 154. https://doi.org/10.1186/1471-2105-10-154
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  • [6]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
    Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C. K., et al. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics, 10(1), 50. https://doi.org/10.1186/1471-2105-10-50
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  • [5]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
    Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., et al. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics, 25(23), 3128-3134. https://doi.org/10.1093/bioinformatics/btp568
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  • [4]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
    Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., et al. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics, 24(23), 2726-2732. https://doi.org/10.1093/bioinformatics/btn452
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  • [3]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
    Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., et al. (2008). ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). HUPO 7th Annual World Congress
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  • [2]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
    Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology, 1(1), 55. https://doi.org/10.1186/1752-0509-1-55
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  • [1]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302 OA
    Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., et al. (2005). BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics, 21(7), 853-859. https://doi.org/10.1093/bioinformatics/bti091
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