Stefan Albaum

stefan.albaum@uni-bielefeld.de
ORCID logo https://orcid.org/0000-0002-1827-9914

PEVZ-ID
181902

41 Publikationen

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  • [41]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311 OA
    Tzanakis K, Nattkemper TW, Niehaus K, Albaum S. MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data. BMC Bioinformatics. 2022;23(1): 267.
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  • [40]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965966
    Paggi RA, Albaum S, Poetsch A, Cerletti M. Proteome Turnover Analysis in Haloferax volcanii by a Heavy Isotope Multilabeling Approach. Methods in Molecular Biology. 2022;2522:267-286.
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  • [39]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960640 OA
    Luenenschloss A, ter Veld F, Albaum S, Neddermann T, Wendisch VF, Poetsch A. Functional genomics uncovers pleiotropic role of rhomboids in Corynebacterium glutamicum. Frontiers in Microbiology. 2022;13: 771968.
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  • [38]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358
    Lichtenstein D, Mentz A, Sprenger H, et al. A targeted transcriptomics approach for the determination of mixture effects of pesticides. Toxicology. 2021;460: 152892.
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  • [37]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949076 OA
    Sielemann K, Elbeck Z, Gärtner A, et al. Distinct Myocardial Transcriptomic Profiles of Cardiomyopathies Stratified by the Mutant Genes. Genes. 2020;11(12): 1430.
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  • [36]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242
    Lichtenstein D, Mentz A, Schmidt FF, et al. Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells. Food and Chemical Toxicology. 2020;145: 111690.
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  • [35]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248
    Braeuning A, Mentz A, Schmidt FF, et al. RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS. EXCLI JOURNAL. 2020;19:135-153.
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  • [34]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490
    Seeger B, Mentz A, Knebel C, et al. Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies. Archives of toxicology. 2019;93(8):2321-2333.
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  • [33]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
    Bischof LF, Haurat MF, Hoffmann L, et al. Early Response of Sulfolobus acidocaldarius to Nutrient Limitation. FRONTIERS IN MICROBIOLOGY. 2019;9: 3201.
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  • [32]
    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250
    Schelletter L, Albaum S, Walter S, Noll T, Hoffrogge R. Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS. Applied microbiology and biotechnology. 2019;103(19):8127-8143.
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  • [31]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330
    Robledo M, Schlueter J-P, Loehr LO, et al. An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA. FRONTIERS IN MICROBIOLOGY. 2018;9: 14.
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  • [30]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
    Jaenicke S, Albaum S, Blumenkamp P, Linke B, Stoye J, Goesmann A. Flexible metagenome analysis using the MGX framework. Microbiome. 2018;6(1): 76.
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  • [29]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065
    Cerletti M, Paggi R, Troetschel C, et al. LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii. JOURNAL OF PROTEOME RESEARCH. 2018;17(3):1158-1171.
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  • [28]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
    Jünemann S, Kleinbölting N, Jaenicke S, et al. Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology. 2017;261(SI):10-23.
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  • [27]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911396
    Müller B, Heinrich C, Jabs W, et al. Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS. Journal of Biotechnology. 2017;257:87-98.
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  • [26]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916543
    Harst A, Albaum S, Bojarzyn T, Trötschel C, Poetsch A. Proteomics of FACS-sorted heterogeneous Corynebacterium glutamicum populations. Journal of Proteomics. 2017;160:1-7.
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  • [25]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705 OA
    Brink B, Seidel A, Kleinbölting N, Nattkemper TW, Albaum S. Omics Fusion - A Platform for Integrative Analysis of Omics Data. Journal of Integrative Bioinformatics. 2016;13(4: SI): 296.
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  • [24]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676 OA
    Jaenicke S, Bunk B, Wibberg D, et al. Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T). Genome Announcements. 2016;4(6): e01334-16.
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  • [23]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
    Ortseifen V, Stolze Y, Maus I, et al. An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology. 2016;231:268-279.
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  • [22]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
    Arnold M, Wibberg D, Blom J, et al. Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements. 2015;3(4): e00680-15.
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  • [21]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138 OA
    Kessler N, Bonte A, Albaum S, et al. Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology. 2015;3: 35.
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  • [20]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297 OA
    Wibberg D, Rupp O, Blom J, et al. Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates. Plos One. 2015;10(12): e0144769.
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  • [19]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718767
    Wingens M, Gätgens J, Schmidt A, et al. 2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects. Journal of Biotechnology. 2015;201:86-97.
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  • [18]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
    Wibberg D, Alkhateeb R, Winkler A, et al. Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951). Journal of Biotechnology. 2015;204:45-46.
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  • [17]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819
    Wippermann A, Klausing S, Rupp O, et al. Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells. Applied Microbiology and Biotechnology. 2014;98(2):579-589.
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  • [16]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
    Jünemann S, Prior K, Albersmeier A, et al. GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE. 2014;9(9): e107014.
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  • [15]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029 OA
    Kessler N, Walter F, Persicke M, et al. ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE. 2014;9(11): e113909.
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  • [14]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
    Becker J, Timmermann C, Rupp O, et al. Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology. 2014;178:23-31.
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  • [13]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776
    Trötschel C, Albaum S, Poetsch A. Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria. Microbial biotechnology. 2013;6(6):708-719.
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  • [12]
    2012 | Bielefelder E-Dissertation | PUB-ID: 2547531 OA
    Albaum S. QuPE - An integrated bioinformatics platform for quantitative proteomics. Bielefeld: Universität Bielefeld; 2012.
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  • [11]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
    Trötschel C, Albaum S, Wolff D, et al. Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics. 2012;11(8):512-526.
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  • [10]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
    Albaum S, Hahne H, Otto A, et al. A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science. 2011;9(1): 30.
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  • [9]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800 OA
    Toepel J, Albaum S, Arvidsson S, et al. Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics. 2011;12(1): 579.
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  • [8]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813 OA
    Neuweger H, Persicke M, Albaum S, et al. Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology. 2009;3(1): 82.
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  • [7]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
    Blom J, Albaum S, Doppmeier D, et al. EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics. 2009;10(1): 154.
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  • [6]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
    Dondrup M, Albaum S, Griebel T, et al. EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics. 2009;10(1): 50.
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  • [5]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
    Albaum S, Neuweger H, Fraenzel B, et al. Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics. 2009;25(23):3128-3134.
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  • [4]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
    Neuweger H, Albaum S, Dondrup M, et al. MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics. 2008;24(23):2726-2732.
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  • [3]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
    Albaum S, Neuweger H, Lange S, et al. ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). In: HUPO 7th Annual World Congress. 2008.
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  • [2]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
    Neuweger H, Baumbach J, Albaum S, et al. CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology. 2007;1(1): 55.
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  • [1]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302 OA
    Bartels D, Kespohl S, Albaum S, et al. BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics. 2005;21(7):853-859.
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