42 Publikationen
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012Jaenicke, S., Albaum, S., Blumenkamp, P., Linke, B., Stoye, J. & Goesmann, A. (2018). Flexible metagenome analysis using the MGX framework. Microbiome, 6(1): 76. Springer Science and Business Media LLC. doi:10.1186/s40168-018-0460-1.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., Albaum, S., Schlüter, A., Goesmann, A., Sczyrba, A. & Stoye, J. (2017). Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology, 261(SI), 10-23. Elsevier BV. doi:10.1016/j.jbiotec.2017.08.012.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260Maus, I., Koeck, D.E., Cibis, K.G., Hahnke, S., Kim, Y.S., Langer, T., Kreubel, J., Erhard, M., Bremges, A., Off, S., Stolze, Y., Jaenicke, S., Goesmann, A., Sczyrba, A., Scherer, P., König, H., Schwarz, W.H., Zverlov, V.V., Liebl, W., Pühler, A., Schlüter, A. & Klocke, M. (2016). Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. Biotechnology for Biofuels, 9(1): 171. Springer Nature. doi:10.1186/s13068-016-0581-3.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691Martini, M.C., Wibberg, D., Lozano, M., Torres Tejerizo, G., Albicoro, F.J., Jaenicke, S., van Elsas, J.D., Petroni, A., Garcillan-Barcia, M.P., de la Cruz, F., Schlüter, A., Pühler, A., Pistorio, M., Lagares, A. & Del Papa, M.F. (2016). Genomics of high molecular weight plasmids isolated from an on-farm biopurification system. Scientific Reports, 6(1): 28284. Nature Publishing Group. doi:10.1038/srep28284.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234Ortseifen, V., Stolze, Y., Maus, I., Sczyrba, A., Bremges, A., Albaum, S., Jaenicke, S., Fracowiak, J., Pühler, A. & Schlüter, A. (2016). An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology, 231, 268-279. Elsevier BV. doi:10.1016/j.jbiotec.2016.06.014.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765190Rückert, C., Kriete, M., Jaenicke, S., Winkler, A. & Tauch, A. (2015). Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare. Genome announcements, 3(4): e00783-15. American Society for Microbiology. doi:10.1128/genomeA.00783-15.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765197Rückert, C., Kriete, M., Jaenicke, S., Winkler, A. & Tauch, A. (2015). Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise. Genome announcements, 3(4): e00784-15. American Society for Microbiology. doi:10.1128/genomeA.00784-15.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722382Stolze, Y., Zakrzewski, M., Maus, I., Eikmeyer, F.G., Jaenicke, S., Rottmann, N., Siebner, C., Pühler, A. & Schlüter, A. (2015). Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions. Biotechnology for Biofuels, 8(1): 14. Springer Nature. doi:10.1186/s13068-014-0193-8.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., Pühler, A., Jaeger, K.-E. & Ernst, J.F. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology, 211, 20-30. Elsevier. doi:10.1016/j.jbiotec.2015.06.423.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877Rückert, C., Albersmeier, A., Busche, T., Jaenicke, S., Winkler, A., Friðjónsson, Ó.H., Hreggviðsson, G.Ó., Lambert, C., Badcock, D., Bernaerts, K., Anne, J., Economou, A. & Kalinowski, J. (2015). Complete genome sequence of Streptomyces lividans TK24. Journal of Biotechnology, 199, 21-22. Elsevier. doi:10.1016/j.jbiotec.2015.02.004.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719679Vinardell, J.M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., Crespo-Rivas, J.C., Goesmann, A., Jaenicke, S., Krol, E., McIntosh, M., Margaret, I., Pérez-Montaño, F., Schneiker-Bekel, S., Serrania, J., Szczepanowski, R., Buendia-Claveria, A.M., Lloret, J., Bonilla, I., Pühler, A., Ruiz-Sainz, J.E. & Weidner, S. (2015). The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions, 28(7), 811-824. Scientific Societies. doi:10.1094/mpmi-12-14-0397-fi.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2692360Tippelt, A., Möllmann, S., Albersmeier, A., Jaenicke, S., Rückert, C. & Tauch, A. (2014). Mycolic Acid Biosynthesis Genes in the Genome Sequence of Corynebacterium atypicum DSM 44849. Genome announcements, 2(4). American Society for Microbiology. doi:10.1128/genomeA.00845-14.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732Klippel, B., Sahm, K., Basner, A., Wiebusch, S., John, P., Lorenz, U., Peters, A., Abe, F., Takahashi, K., Kaiser, O., Goesmann, A., Jaenicke, S., Grote, R., Horikoshi, K. & Antranikian, G. (2014). Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles, 18(5), 853-863. Springer Science + Business Media. doi:10.1007/s00792-014-0676-3.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2582332Guimarães, L.C., Soares, S.C., Albersmeier, A., Blom, J., Jaenicke, S., Azevedo, V., Soriano, F., Tauch, A. & Trost, E. (2013). Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis. Genome announcements, 1(3): e00264-13. American Society for Microbiology. doi:10.1128/genomeA.00264-13.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557779Weidner, S., Baumgarth, B., Göttfert, M., Jaenicke, S., Pühler, A., Schneiker-Bekel, S., Serrania, J., Szczepanowski, R. & Becker, A. (2013). Genome Sequence of Sinorhizobium meliloti Rm41. Genome Announcements, 1(1), e00013-12. American Society for Microbiology. doi:10.1128/genomeA.00013-12.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605193Eikmeyer, F.G., Rademacher, A., Hanreich, A., Hennig, M., Jaenicke, S., Maus, I., Wibberg, D., Zakrzewski, M., Pühler, A., Klocke, M. & Schlüter, A. (2013). Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms. Biotechnology for Biofuels, 6(1): 49. Springer Science + Business Media. doi:10.1186/1754-6834-6-49.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309Bolzan de Campos, S., Youn, J.-W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., Vargas, L.K., Goesmann, A., Wendisch, V.F. & Passagilia, L. (2013). Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology, 65(3), 593-601. Springer Science + Business Media. doi:10.1007/s00248-012-0132-9.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460Roetzer, A., Diel, R., Kohl, T.A., Rückert, C., Nübel, U., Blom, J., Wirth, T., Jaenicke, S., Schuback, S., Rüsch-Gerdes, S., Supply, P., Kalinowski, J. & Niemann, S. (2013). Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study. PLoS medicine, 10(2): e1001387. Public Library of Science (PLoS). doi:10.1371/journal.pmed.1001387.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080Toepel, J., Illmer-Kephalides, M., Jaenicke, S., Straube, J., May, P., Goesmann, A. & Kruse, O. (2013). New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics. Plant Biotechnology Journal, 11(6), 717-733. Wiley-Blackwell. doi:10.1111/pbi.12062.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526Koeck, D.E., Wibberg, D., Koellmeier, T., Blom, J., Jaenicke, S., Winkler, A., Albersmeier, A., Zverlov, V.V., Pühler, A., Schwarz, W.H. & Schlüter, A. (2013). Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology, 168(1), 62-63. Elsevier BV. doi:10.1016/j.jbiotec.2013.08.011.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286Luque-Almagro, V.M., Acera, F., Igeño, M.I., Wibberg, D., Roldán, M.D., Sáez, L.P., Hennig, M., Quesada, A., Huertas, M.J., Blom, J., Merchán, F., Escribano, M.P., Jaenicke, S., Estepa, J., Guijo, M.I., Martínez-Luque, M., Macías, D., Szczepanowski, R., Becerra, G., Ramirez, S., Carmona, M.I., Gutiérrez, O., Manso, I., Pühler, A., Castillo, F., Moreno-Vivián, C., Schlüter, A. & Blasco, R. (2013). Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology, 15(1), 253-270. Wiley-Blackwell. doi:10.1111/j.1462-2920.2012.02875.x.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160Schröder, J., Maus, I., Meyer, K., Wördemann, S., Blom, J., Jaenicke, S., Schneider, J., Trost, E. & Tauch, A. (2012). Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient. BMC Genomics, 13(1): 141. Springer Science + Business Media. doi:10.1186/1471-2164-13-141.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473849Weidner, S., Becker, A., Bonilla, I., Jaenicke, S., Lloret, J., Margaret, I., Pühler, A., Ruiz-Sainz, J.E., Schneiker-Bekel, S., Szczepanowski, R., Vinardell, J.M., Zehner, S. & Göttfert, M. (2012). Genome Sequence of the Soybean Symbiont Sinorhizobium fredii HH103. Journal of Bacteriology, 194(6), 1617-1618. American Society for Microbiology. doi:10.1128/JB.06729-11.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F.G., Szczepanowski, R., Al-Soud, W.A., Sørensen, S., Pühler, A. & Schlüter, A. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology, 158(4), 248-258. Elsevier BV. doi:10.1016/j.jbiotec.2012.01.020.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347Trost, E., Blom, J., de Castro Soares, S., Huang, I.-H., Al-Dilaimi, A., Schröder, J., Jaenicke, S., Dorella, F.A., Rocha, F.S., Miyoshi, A., Azevedo, V., Schneider, M.P., Silva, A., Camello, T.C., Sabbadini, P.S., Santos, C.S., Santos, L.S., Hirata, R.J., Mattos-Guaraldi, A.L., Efstratiou, A., Schmitt, M.P., Ton-That, H. & Tauch, A. (2012). Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia. Journal of bacteriology, 194(12), 3199-3215. American Society for Microbiology. doi:10.1128/JB.00183-12.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002Schneider, J., Rupp, O., Trost, E., Jaenicke, S., Passoth, V., Goesmann, A., Tauch, A. & Brinkrolf, K. (2012). Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research, 12(3), 382-386. Oxford University Press (OUP). doi:10.1111/j.1567-1364.2012.00791.x.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774Schneider, J., Andrea, H., Blom, J., Jaenicke, S., Rückert, C., Schorsch, C., Szczepanowski, R., Farwick, M., Goesmann, A., Pühler, A., Schaffer, S., Tauch, A., Köhler, T. & Brinkrolf, K. (2012). Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell, 11(12), 1582-1583. American Society for Microbiology. doi:10.1128/EC.00258-12.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530487Filippini, M., Qi, W., Jaenicke, S., Goesmann, A., Smits, T.H.M. & Bagheri, H.C. (2012). Genome Sequence of the Filamentous Bacterium Fibrisoma limi BUZ 3(T). Journal of Bacteriology, 194(16), 4445. American Society for Microbiology. doi:10.1128/JB.00869-12.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298Maus, I., Wibberg, D., Stantscheff, R., Eikmeyer, F.G., Seffner, A., Boelter, J., Szczepanowski, R., Blom, J., Jaenicke, S., König, H., Pühler, A. & Schlüter, A. (2012). Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. Journal of Bacteriology, 194(19), 5487-5488. American Society for Microbiology. doi:10.1128/JB.01292-12.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933Dohrmann, A.B., Küting, M., Jünemann, S., Jaenicke, S., Schlüter, A. & Tebbe, C.C. (2012). Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties. The ISME journal, 7(1), 37-49. Nature Publishing Group. doi:10.1038/ismej.2012.77.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K.-H., Jünemann, S., Kaiser, O., Krause, L., Tille, F., Zakrzewski, M., Pühler, A., Schlüter, A. & Goesmann, A. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE, 6(1): e14519. Public Library of Science (PLoS). doi:10.1371/journal.pone.0014519.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., Szczepanowski, R., Goesmann, A., Setubal, J.C., Schmitt, R., Pühler, A. & Schlüter, A. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology, 155(1), 50-62. Elsevier BV. doi:10.1016/j.jbiotec.2011.01.010.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371Küberl, A., Schneider, J., Thallinger, G.G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., Brinkrolf, K., Goesmann, A., Szczepanowski, R., Pühler, A., Schwab, H., Glieder, A. & Pichler, H. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology, 154(4), 312-320. Elsevier BV. doi:10.1016/j.jbiotec.2011.04.014.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445Schneider, J., Blom, J., Jaenicke, S., Linke, B., Brinkrolf, K., Neuweger, H., Tauch, A. & Goesmann, A. (2011). RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology, 155(1), 118-126. Elsevier BV. doi:10.1016/j.jbiotec.2010.10.076.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730Gonzalez, J.M., Pinhassi, J., Fernández-Gómez, B., Coll-Llado, M., Gonzalez-Velazquez, M., Puigbo, P., Jaenicke, S., Gomez-Consarnau, L., Fernandez-Guerra, A., Goesmann, A. & Pedros-Alio, C. (2011). Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134. Applied and Environmental Microbiology, 77(24), 8676-8686. Am Soc Microbiol. doi:10.1128/aem.06152-11.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A. & Schlüter, A. (2011). Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. In F.J. de Bruijn (Hrsg.), Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (S. 403-414). Hoboken, NJ, USA: Wiley-Blackwell. doi:10.1002/9781118010549.ch39.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J. & Goesmann, A. (2011). Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics, 27(10), 1351-1358. Oxford University Press (OUP). doi:10.1093/bioinformatics/btr151.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439Trost, E., Ott, L., Schneider, J., Schröder, J., Jaenicke, S., Goesmann, A., Husemann, P., Stoye, J., Alves Dorella, F., Souza Rocha, F., de Castro Soares, S., D'Afonseca, V., Miyoshi, A., Ruiz, J., Silva, A., Azevedo, V., Burkovski, A., Guiso, N., Join-Lambert, O.F., Kayal, S. & Tauch, A. (2010). The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics, 11(1): 728. Springer Science + Business Media. doi:10.1186/1471-2164-11-728.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497Schlüter, J.-P., Reinkensmeier, J., Daschkey, S., Evguenieva-Hackenberg, E., Janssen, S., Jaenicke, S., Becker, J.D., Giegerich, R. & Becker, A. (2010). A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics, 11(1): 245. Springer Science + Business Media. doi:10.1186/1471-2164-11-245.
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2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907Mittard-Runte, V., Bekel, T., Blom, J., Dondrup, M., Henckel, K., Jaenicke, S., Krause, L., Linke, B., Neuweger, H., Schneiker-Bekel, S. & Goesmann, A. (2010). Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions. In J.M. Cock, K. Tessmar-Raible, C. Boyen & F. Viard (Hrsg.), Introduction to Marine Genomics (Advances in Marine Genomics) (S. 315-396). Netherlands: Springer Netherlands. doi:10.1007/978-90-481-8639-6_9.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644Smits, T.H.M., Jaenicke, S., Rezzonico, F., Kamber, T., Goesmann, A., Frey, J.E. & Duffy, B. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics, 11(1): 2. Springer Science + Business Media. doi:10.1186/1471-2164-11-2.