Rafael Szczepanowski
PEVZ-ID
48 Publikationen
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycinPUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkämper A, Pühler A, Biener R, Schwartz D, Kalinowski J (2014)
Journal of biotechnology 178: 41-42. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2648007Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T)PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Albersmeier A, Al-Dilaimi A, Bednarz H, Niehaus K, Szczepanowski R, Kalinowski J (2013)
Standards in Genomic Sciences 9(3): 505-513. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation SequencingPUB | DOI | WoS | PubMed | Europe PMC
Bolzan de Campos S, Youn J-W, Farina R, Jaenicke S, Jünemann S, Szczepanowski R, Beneduzi A, Vargas LK, Goesmann A, Wendisch VF, Passagilia L (2013)
Microbial Ecology 65(3): 593-601. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soilPUB | DOI | WoS | PubMed | Europe PMC
Köhler KAK, Rückert C, Schatschneider S, Vorhölter F-J, Szczepanowski R, Blank LM, Niehaus K, Goesmann A, Pühler A, Kalinowski J, Schmid A (2013)
Journal of Biotechnology 168(4): 729-730. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344PUB | DOI | WoS | PubMed | Europe PMC
Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, et al. (2013)
Environmental Microbiology 15(1): 253-270. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon SequencingPUB | DOI | WoS | PubMed | Europe PMC
Jünemann S, Prior K, Szczepanowski R, Harks I, Ehmke B, Goesmann A, Stoye J, Harmsen D (2012)
PLoS ONE 7(8): e41606. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Pühler A (2012)
BMC Genomics 13(1): 112. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551038Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093T (= DSM 44683T)PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Albersmeier A, Al-Dilaimi A, Niehaus K, Szczepanowski R, Kalinowski J (2012)
Standards in Genomic Sciences 7(2): 284-293. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencingPUB | DOI | WoS | PubMed | Europe PMC
Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer FG, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A (2012)
Journal of Biotechnology 158(4): 248-258. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavinPUB | DOI | WoS | PubMed | Europe PMC
Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M (2012)
Journal of bacteriology 194(24): 6818-6827. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472279The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolutionPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Eikmeyer FG, Hadiati A, Szczepanowski R, Wibberg D, Schneiker-Bekel S, Rogers LM, Brown CB, Top EM, Pühler A, Schlüter A (2012)
Plasmid 68(1): 13-24. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silagePUB | DOI | WoS | PubMed | Europe PMC
Heinl S, Wibberg D, Eikmeyer FG, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A (2012)
Journal of Biotechnology 161(2): 153-166. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencingPUB | DOI | WoS | PubMed | Europe PMC
Rademacher A, Zakrzewski M, Schlüter A, Schonberg M, Szczepanowski R, Goesmann A, Pühler A, Klocke M (2012)
FEMS Microbiology Ecology 79(3): 785-799. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474305Carbapenem-Hydrolyzing GES-5-Encoding Gene on Different Plasmid Types Recovered from a Bacterial Community in a Sewage Treatment PlantPUB | DOI | WoS | PubMed | Europe PMC
Girlich D, Poirel L, Szczepanowski R, Schlüter A, Nordmann P (2012)
Applied and Environmental Microbiology 78(4): 1292-1295. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10PUB | DOI | WoS | PubMed | Europe PMC
Schneider J, Andrea H, Blom J, Jaenicke S, Rückert C, Schorsch C, Szczepanowski R, Farwick M, Goesmann A, Pühler A, Schaffer S, et al. (2012)
Eukaryotic Cell 11(12): 1582-1583. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced PseudonocardiaceaePUB | PDF | DOI | WoS | PubMed | Europe PMC
Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Pühler A, Szczepanowski R, Bechthold A, Rückert C (2012)
BMC Genomics 13(1): 465. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge DigesterPUB | DOI | WoS | PubMed | Europe PMC
Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, et al. (2012)
Journal of Bacteriology 194(19): 5487-5488. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing informationPUB | DOI | WoS | PubMed | Europe PMC
Vogel U, Szczepanowski R, Claus H, Jünemann S, Prior K, Harmsen D (2012)
Journal of clinical microbiology 50(6): 1889-1894. -
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768Next-generation sequencing of the CHO cell transcriptomePUB | DOI
Becker J, Timmermann C, Jakobi T, Rupp O, Szczepanowski R, Hackl M, Goesmann A, Tauch A, Borth N, Grillari J, Pühler A, et al. (2011)
BMC Proceedings 5(Suppl. 8): P6. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technologyPUB | DOI | WoS | PubMed | Europe PMC
Schwientek P, Szczepanowski R, Rückert C, Stoye J, Pühler A (2011)
Journal of Biotechnology 155(1): 68-77. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmidPUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, et al. (2011)
Journal of Biotechnology 155(1): 50-62. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371High-quality genome sequence of Pichia pastoris CBS7435PUB | DOI | WoS | PubMed | Europe PMC
Küberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Pühler A, et al. (2011)
Journal of Biotechnology 154(4): 312-320. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326465First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp groupPUB | DOI | WoS | PubMed | Europe PMC
Torres Tejerizo G, Florencia Del Papa M, Draghi W, Lozano M, de los Angeles Giusti M, Martini C, Eugenia Salas M, Salto I, Wibberg D, Szczepanowski R, Weidner S, et al. (2011)
Journal of Biotechnology 155(1): 3-10. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencingPUB | DOI | WoS | PubMed | Europe PMC
Becker J, Hackel M, Jakobi T, Rupp O, Schneider J, Szczepanowski R, Bekel T, Borth N, Goesmann A, Grillari J, Kaltschmidt C, et al. (2011)
Journal of Biotechnology 156(3): 227-235. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regionsPUB | DOI | WoS | PubMed | Europe PMC
Szczepanowski R, Eikmeyer FG, Harfmann J, Blom J, Rogers LM, Top EM, Schlüter A (2011)
Journal of Biotechnology 155(1): 95-103. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineeringPUB | DOI | WoS | PubMed | Europe PMC
Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Höner zu Siederdissen C, Bort JAH, Wieser M, Kunert R, et al. (2011)
Journal of Biotechnology 153(1-2): 62-75. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortionPUB | PDF | DOI | WoS | PubMed | Europe PMC
Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehöver P, Arnold W, Bekel T, Blom J, Gartemann K-H, et al. (2010)
BMC Genomics 11(1): 91. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486400Advanced Genomics and Transcriptomics of Industrial MicroorganismsPUB | DOI
Kalinowski J, Rückert C, Szczepanowski R, Pühler A (2010)
Chemie Ingenieur Technik 82(9): 1518-1519. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591546Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibioticsPUB | DOI | WoS | PubMed | Europe PMC
Szczepanowski R, Linke B, Krahn I, Gartemann K-H, Guetzkow T, Eichler W, Pühler A, Schlueter A (2009)
MICROBIOLOGY 155(7): 2306-2319. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585980Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plantPUB | DOI | WoS | PubMed | Europe PMC
Schlueter A, Krause L, Szczepanowski R, Goesmann A, Pühler A (2008)
Journal of Biotechnology 136(1-2): 65-76. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585969Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technologyPUB | DOI | WoS | PubMed | Europe PMC
Szczepanowski R, Bekel T, Goesmann A, Krause L, Kroemeke H, Kaiser O, Eichler W, Pühler A, Schlueter A (2008)
JOURNAL OF BIOTECHNOLOGY 136(1-2): 54-64. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactorPUB | DOI | WoS | PubMed | Europe PMC
Krause L, Diaz NN, Edwards RA, Gartemann K-H, Krömeke H, Neuweger H, Pühler A, Runte KJ, Schlüter A, Stoye J, Szczepanowski R, et al. (2008)
JOURNAL OF BIOTECHNOLOGY 136(1-2): 91-101. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technologyPUB | DOI | WoS | PubMed | Europe PMC
Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann K-H, Krahn I, Krause L, Kroemeke H, Kruse O, Mussgnug JH, et al. (2008)
Journal of Biotechnology 136(1-2): 77-90. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acidsPUB | DOI | WoS | PubMed | Europe PMC
Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehöver P, Gartemann K-H, Arnold W, Blom J, Brinkrolf K, Brune I, Goetker S, et al. (2008)
Journal of Biotechnology 136(1-2): 22-30. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595908Novel macrolide resistance module carried by the IncP-1 beta resistance plasmid pRSB111, isolated from a wastewater treatment plantPUB | DOI | WoS | PubMed | Europe PMC
Szczepanowski R, Krahn I, Bohn N, Pühler A, Schlueter A (2007)
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 51(2): 673-678. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593538Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene poolPUB | DOI | WoS | PubMed | Europe PMC
Schlüter A, Szczepanowski R, Pühler A, Top EM (2007)
FEMS MICROBIOLOGY REVIEWS 31(4): 449-477. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595014Erythromycin resistance-conferring plasmid pRSB105, isolated from a sewage treatment plant, harbors a new macrolide resistance determinant, an integron-containing Tn402-like element, and a large region of unknown functionPUB | DOI | WoS | PubMed | Europe PMC
Schlüter A, Szczepanowski R, Kurz N, Schneiker-Bekel S, Krahn I, Pühler A (2007)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73(6): 1952-1960. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946125IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyesPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Schlüter A, Krahn I, Kollin F, Bonemann G, Stiens M, Szczepanowski R, Schneiker-Bekel S, Pühler A (2007)
Appl Environ Microbiol 73(20): 6345-6350. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604328The 120 592 bp lncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different anti biotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functionsPUB | DOI | WoS | PubMed | Europe PMC
Szczepanowski R, Braun S, Riedel V, Schneiker-Bekel S, Krahn I, Pühler A, Schlüter A (2005)
MICROBIOLOGY-SGM 151(4): 1095-1111. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1864013Genomics of resistance plasmids isolated from wastewater treatment plantsPUB
Tennstedt T, Heuer H, Top EM, Szczepanowski R, Pühler A, Schlüter A (2005)
Plasmid 53(1): 40-41. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602311Plasmid pB8 is closely related to the prototype IncP-1 beta plasmid R751 but transfers poorly to Escherichia coli and carries a new transposon encoding a small multidrug resistance efflux proteinPUB | DOI | WoS | PubMed | Europe PMC
Schlüter A, Heuer H, Szczepanowski R, Poler SM, Schneiker-Bekel S, Pühler A, Top EM (2005)
PLASMID 54(2): 135-148. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603956Sequence of the 68,869 bp IncP-1 alpha plasmid pTB11 from a waste-water treatment plant reveals a highly conserved backbone, a Tn402-like integron and other transposable elementsPUB | DOI | WoS | PubMed | Europe PMC
Tennstedt T, Szczepanowski R, Krahn I, Pühler A, Schlüter A (2005)
PLASMID 53(3): 218-238. -
2004 | Dissertation | PUB-ID: 2435352Sequenzerstellung, komparative Genomik und funktionelle Analysen von Antibiotika-Resistenzplasmiden aus Belebtschlammbakterien einer kommunalen AbwasserkläranlagePUB
Szczepanowski R (2004)
Bielefeld. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport systemPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Szczepanowski R, Krahn I, Linke B, Goesmann A, Pühler A, Schlüter A (2004)
Microbiology 150(11): 3613-3630. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605648The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1 beta group without any accessory genesPUB | DOI | WoS | PubMed | Europe PMC
Heuer H, Szczepanowski R, Schneiker-Bekel S, Pühler A, Top EM, Schlüter A (2004)
Microbiology 150(11): 3591-3599. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605701Different molecular rearrangements in the integron of the IncP-1 beta resistance plasmid pB10 isolated from a wastewater treatment plant result in elevated beta-lactam resistance levelsPUB | DOI | WoS | PubMed | Europe PMC
Krahn I, Szczepanowski R, Pühler A, Schlüter A (2004)
ARCHIVES OF MICROBIOLOGY 182(6): 429-435. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609647The 64 508 bp IncP-1 beta antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1 beta groupPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Schlüter A, Heuer H, Szczepanowski R, Forney LJ, Thomas CM, Pühler A, Top EM (2003)
Microbiology 149: 3139-3153. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610484Occurrence of integron-associated resistance gene cassettes located on antibiotic resistance plasmids isolated from a wastewater treatment plantPUB | DOI | WoS | PubMed | Europe PMC
Tennstedt T, Szczepanowski R, Braun S, Pühler A, Schluter A (2003)
FEMS MICROBIOLOGY ECOLOGY 45(3): 239-252.