41 Publikationen
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2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988204Epigenetic profiling of murine innate lymphoid cells under homeostatic and acute/memory-like inflammatory conditionsPUB | WoS
Diem, E., Epigenetic profiling of murine innate lymphoid cells under homeostatic and acute/memory-like inflammatory conditions. Joint Conference of the Société Française d'Immunologie (SFI) and the Deutsche Gesellschaft für Immunologie (DGfI), 26–29 September, 2023, Strasbourg, France 53 (Suppl. 2). Hoboken, 2023 -
2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988223TBKBP1 is a novel player modulating the cytotoxic function of human cytomegalovirus-specific CD8+T cellsPUB | WoS
Yu, Z., TBKBP1 is a novel player modulating the cytotoxic function of human cytomegalovirus-specific CD8+T cells. 53 (S2). Hoboken, 2023 -
2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988234Role of ZEB2 in the function of antigen-specific human CD8+T cellsPUB | WoS
Sasidharan, Nair, V, Role of ZEB2 in the function of antigen-specific human CD8+T cells. 53 (S2). Hoboken, 2023 -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983209Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and MetaproteomicsPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Hassa, Julia, Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics. Microorganisms 11 (10). , 2023 -
2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2978079Bursts in biosynthetic gene cluster transcription are accompanied by surges of natural compound production in the myxobacterium Sorangium sp.PUB | PDF | DOI | PubMed | Europe PMC
Boldt, Judith, Bursts in biosynthetic gene cluster transcription are accompanied by surges of natural compound production in the myxobacterium Sorangium sp.. Microbial Biotechnology (). , 2023 -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967522Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34(+) stromal cell subsetsPUB | DOI | WoS | PubMed | Europe PMC
Pezoldt, Joern, Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34(+) stromal cell subsets. Nature Communications 13 (1). , 2022 -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965101Profiling of epigenetic marker regions in murine ILCs under homeostatic and inflammatory conditionsPUB | DOI | WoS | PubMed | Europe PMC
Beckstette, Michael, Profiling of epigenetic marker regions in murine ILCs under homeostatic and inflammatory conditions. Journal of Experimental Medicine 219 (10). , 2022 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling PipelinesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Brandt, David, Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines. Viruses 13 (9). , 2021 -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomicsPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Maus, Irena, Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics. Environmental Microbiome 15 (1). , 2020 -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell CompartmentPUB | DOI | WoS | PubMed | Europe PMC
Schulte-Schrepping, Jonas, Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment. Cell 182 (6). , 2020 -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953280The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilisPUB | DOI | WoS | PubMed | Europe PMC | Preprint
Schäfer, Heinrich, The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis. PLOS Genetics 16 (3). , 2020 -
2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2953279Transkriptomanalysen in der Frühphase der Theilervirusinfektion zeigen Unterschiede in der angeborenen Immunantwort und Antigenpräsentation bei SJL- und C57BL/6-MäusenPUB | DOI
Ciurkiewicz, M., Transkriptomanalysen in der Frühphase der Theilervirusinfektion zeigen Unterschiede in der angeborenen Immunantwort und Antigenpräsentation bei SJL- und C57BL/6-Mäusen. 63. Jahrestagung der Fachgruppe Pathologie der Deutschen Veterinärmedizinischen Gesellschaft 48 (03). Stuttgart, 2020 -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953282Innate Antiviral Specialization of Ly6C+CD45+ Splenic Red Pulp Stroma Instilled by Subset-Specific Regulation of Cellular Sensitivity to Type I InterferonsPUB | DOI
Pezoldt, Joern, Innate Antiviral Specialization of Ly6C+CD45+ Splenic Red Pulp Stroma Instilled by Subset-Specific Regulation of Cellular Sensitivity to Type I Interferons. SSRN Electronic Journal (). , 2020 -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953283Early Transcriptional Differences in the Brain of Theiler’s Virus-infected Mouse Strains Reveal Delayed Antiviral Immune Responses in SJL/J micePUB | DOI
Ciurkiewicz, M., Early Transcriptional Differences in the Brain of Theiler’s Virus-infected Mouse Strains Reveal Delayed Antiviral Immune Responses in SJL/J mice. Journal of Comparative Pathology 174 (). , 2020 -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953286Comparative Transcriptomic Profiling of O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological SeparationPUB | DOI | WoS | PubMed | Europe PMC
Schmühl, Carina, Comparative Transcriptomic Profiling of O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation. mSystems 4 (2). , 2019 -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953287Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coliPUB | DOI | WoS | PubMed | Europe PMC
Berndt, Volker, Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli. Scientific Reports 9 (1). , 2019 -
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2953285Discovering Yersinia–Host Interactions by Tissue Dual RNA-SeqPUB | DOI
Kusmierek, Maria, Discovering Yersinia–Host Interactions by Tissue Dual RNA-Seq. Pathogenic Yersinia. Methods and Protocols 2010 (). New York, NY, 2019 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953288Iron Regulation in Clostridioides difficilePUB | DOI | WoS | PubMed | Europe PMC
Berges, Mareike, Iron Regulation in Clostridioides difficile. Frontiers in Microbiology 9 (). , 2018 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953289Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodesPUB | DOI | WoS | PubMed | Europe PMC
Pezoldt, Joern, Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes. Nature Communications 9 (1). , 2018 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953291Tracking gene expression and oxidative damage of O2-stressed Clostridioides difficile by a multi-omics approachPUB | DOI | WoS | PubMed | Europe PMC
Neumann-Schaal, Meina, Tracking gene expression and oxidative damage of O2-stressed Clostridioides difficile by a multi-omics approach. Anaerobe 53 (). , 2018 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953292Intact interleukin-10 receptor signaling protects from hippocampal damage elicited by experimental neurotropic virus infection of SJL micePUB | DOI | WoS | PubMed | Europe PMC
Uhde, Ann-Kathrin, Intact interleukin-10 receptor signaling protects from hippocampal damage elicited by experimental neurotropic virus infection of SJL mice. Scientific Reports 8 (1). , 2018 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953293Loss of CNFY toxin-induced inflammation drives Yersinia pseudotuberculosis into persistencyPUB | DOI | WoS | PubMed | Europe PMC
Heine, Wiebke, Loss of CNFY toxin-induced inflammation drives Yersinia pseudotuberculosis into persistency. PLOS Pathogens 14 (2). , 2018 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics softwarePUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Sczyrba, Alexander, Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods 14 (11). , 2017 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953296Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3 regulatory T cellsPUB | DOI | WoS | PubMed | Europe PMC
Pasztoi, Maria, Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3 regulatory T cells. European Journal of Immunology 47 (12). , 2017 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953297Alloantigen-Induced Regulatory T Cells Generated in Presence of Vitamin C Display Enhanced Stability of Foxp3 Expression and Promote Skin Allograft AcceptancePUB | DOI | WoS | PubMed | Europe PMC
Nikolouli, Eirini, Alloantigen-Induced Regulatory T Cells Generated in Presence of Vitamin C Display Enhanced Stability of Foxp3 Expression and Promote Skin Allograft Acceptance. Frontiers in Immunology 8 (). , 2017 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953298Unique properties of thymic antigen-presenting cells promote epigenetic imprinting of alloantigen-specific regulatory T cellsPUB | DOI | WoS | PubMed | Europe PMC
Garg, Garima, Unique properties of thymic antigen-presenting cells promote epigenetic imprinting of alloantigen-specific regulatory T cells. Oncotarget 8 (22). , 2017 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953299Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host–pathogen transcriptomesPUB | DOI | WoS | PubMed | Europe PMC
Nuss, Aaron M., Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host–pathogen transcriptomes. Proceedings of the National Academy of Sciences 114 (5). , 2017 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953300Transcriptomic and Phenotypic Analysis Reveals New Functions for the Tat Pathway in Yersinia pseudotuberculosisPUB | DOI | WoS | PubMed | Europe PMC
Avican, Ummehan, Transcriptomic and Phenotypic Analysis Reveals New Functions for the Tat Pathway in Yersinia pseudotuberculosis. Journal of Bacteriology 198 (20). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953301Foxp3+ T cells expressing RORγt represent a stable regulatory T-cell effector lineage with enhanced suppressive capacity during intestinal inflammationPUB | DOI | WoS | PubMed | Europe PMC
Yang, B-H, Foxp3+ T cells expressing RORγt represent a stable regulatory T-cell effector lineage with enhanced suppressive capacity during intestinal inflammation. Mucosal Immunology 9 (2). , 2016 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAsPUB | DOI | WoS | PubMed | Europe PMC
Nuss, Aaron M., Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs. PLOS GENETICS 11 (3). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953303Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq AnalysisPUB | DOI | WoS | PubMed | Europe PMC
Avican, Kemal, Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis. PLOS Pathogens 11 (1). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953304An AP4B1 frameshift mutation in siblings with intellectual disability and spastic tetraplegia further delineates the AP-4 deficiency syndromePUB | DOI | WoS | PubMed | Europe PMC
Abdollahpour, Hengameh, An AP4B1 frameshift mutation in siblings with intellectual disability and spastic tetraplegia further delineates the AP-4 deficiency syndrome. European Journal of Human Genetics 23 (2). , 2015 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953305Fast online and index-based algorithms for approximate search of RNA sequence-structure patternsPUB | DOI | WoS | PubMed | Europe PMC
Meyer, Fernando, Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns. BMC Bioinformatics 14 (1). , 2013 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953309Structator: fast index-based search for RNA sequence-structure patternsPUB | DOI | WoS | PubMed | Europe PMC
Meyer, Fernando, Structator: fast index-based search for RNA sequence-structure patterns. BMC Bioinformatics 12 (1). , 2011 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458Significant speedup of database searches with HMMs by search space reduction with PSSM family modelsPUB | DOI | WoS | PubMed | Europe PMC
Beckstette, Michael, Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics 25 (24). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953311Lightweight comparison of RNAs based on exact sequence–structure matchesPUB | DOI | WoS | PubMed | Europe PMC
Heyne, Steffen, Lightweight comparison of RNAs based on exact sequence–structure matches. Bioinformatics 25 (16). , 2009 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864Fast index based algorithms and software for matching position specific scoring matricesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Beckstette, Michael, Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics 7 (1). , 2006 -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Sczyrba, Alexander, XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics 6 (1). , 2005 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529Genlight: Interactive high-throughput sequence analysis and comparative genomicsPUB | DOI
Beckstette, Michael, Genlight: Interactive high-throughput sequence analysis and comparative genomics. Journal of Integrative Bioinformatics 1 (1). , 2004 -
2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383536Genlight: Interactive high-throughput sequence analysis and comparative genomicsPUB
Beckstette, Michael, Genlight: Interactive high-throughput sequence analysis and comparative genomics. German Conference on Bioinformatics. GCB 2004 ; October 4 - 6, 2004, Bielefeld, Germany 53 (). Bonn, 2004 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953316The Maize Single myb histone 1 Gene, Smh1, Belongs to a Novel Gene Family and Encodes a Protein That Binds Telomere DNA Repeats in VitroPUB | DOI | WoS | PubMed | Europe PMC
Marian, Calin O., The Maize Single myb histone 1 Gene, Smh1, Belongs to a Novel Gene Family and Encodes a Protein That Binds Telomere DNA Repeats in Vitro. Plant Physiology 133 (3). , 2003