PUB - Publikationen an der Universität Bielefeld

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• [41]
  

  2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988204

  Diem, E., et al., 2023. Epigenetic profiling of murine innate lymphoid cells under homeostatic and acute/memory-like inflammatory conditions. In Joint Conference of the Société Française d'Immunologie (SFI) and the Deutsche Gesellschaft für Immunologie (DGfI), 26–29 September, 2023, Strasbourg, France. European Journal of Immunology. no.53 Hoboken: Wiley, pp. 238.

  PUB | WoS
   
• [40]
  

  2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988223

  Yu, Z., et al., 2023. TBKBP1 is a novel player modulating the cytotoxic function of human cytomegalovirus-specific CD8+T cells. European Journal of Immunology, 53(S2), p 113.

  PUB | WoS
   
• [39]
  

  2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988234

  Sasidharan, Nair, V., et al., 2023. Role of ZEB2 in the function of antigen-specific human CD8+T cells. European Journal of Immunology , 53(S2), p 143.

  PUB | WoS
   
• [38]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983209

  Hassa, J., et al., 2023. Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics. Microorganisms, 11(10): 2412.

  PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [37]
  

  2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2978079

  Boldt, J., et al., 2023. Bursts in biosynthetic gene cluster transcription are accompanied by surges of natural compound production in the myxobacterium Sorangium sp. Microbial Biotechnology .

  PUB | PDF | DOI | PubMed | Europe PMC
   
• [36]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967522

  Pezoldt, J., et al., 2022. Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34(+) stromal cell subsets. Nature Communications, 13(1): 7227.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [35]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965101

  Beckstette, M., et al., 2022. Profiling of epigenetic marker regions in murine ILCs under homeostatic and inflammatory conditions. Journal of Experimental Medicine, 219(10): e20210663.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [34]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501

  Brandt, D., et al., 2021. Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines. Viruses, 13(9): 1870.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [33]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645

  Maus, I., et al., 2020. Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics. Environmental Microbiome, 15(1): 7.

  PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [32]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267

  Schulte-Schrepping, J., et al., 2020. Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment. Cell, 182(6), p 1419-1440.e23.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [31]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953280

  Schäfer, H., et al., 2020. The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis. PLOS Genetics, 16(3): e1008275.

  PUB | DOI | WoS | PubMed | Europe PMC | Preprint
   
• [30]
  

  2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2953279

  Ciurkiewicz, M., et al., 2020. Transkriptomanalysen in der Frühphase der Theilervirusinfektion zeigen Unterschiede in der angeborenen Immunantwort und Antigenpräsentation bei SJL- und C57BL/6-Mäusen. In 63. Jahrestagung der Fachgruppe Pathologie der Deutschen Veterinärmedizinischen Gesellschaft. Tierärztliche Praxis Ausgabe K: Kleintiere / Heimtiere. no.48 Stuttgart: Georg Thieme Verlag, pp. 220.

  PUB | DOI
   
• [29]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953282

  Pezoldt, J., et al., 2020. Innate Antiviral Specialization of Ly6C+CD45+ Splenic Red Pulp Stroma Instilled by Subset-Specific Regulation of Cellular Sensitivity to Type I Interferons. SSRN Electronic Journal.

  PUB | DOI
   
• [28]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953283

  Ciurkiewicz, M., et al., 2020. Early Transcriptional Differences in the Brain of Theiler’s Virus-infected Mouse Strains Reveal Delayed Antiviral Immune Responses in SJL/J mice. Journal of Comparative Pathology, 174: 178.

  PUB | DOI
   
• [27]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953286

  Schmühl, C., et al., 2019. Comparative Transcriptomic Profiling of O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation. mSystems, 4(2).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [26]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953287

  Berndt, V., et al., 2019. Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli. Scientific Reports, 9(1): 138.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2953285

  Kusmierek, M., et al., 2019. Discovering Yersinia–Host Interactions by Tissue Dual RNA-Seq. In V. Vadyvaloo & M. B. Lawrenz, eds. Pathogenic Yersinia. Methods and Protocols. Methods in Molecular Biology. no.2010 New York, NY: Springer , pp. 99-116.

  PUB | DOI
   
• [24]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953288

  Berges, M., et al., 2018. Iron Regulation in Clostridioides difficile. Frontiers in Microbiology, 9: 3183.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [23]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953289

  Pezoldt, J., et al., 2018. Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes. Nature Communications, 9(1): 3903.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953291

  Neumann-Schaal, M., et al., 2018. Tracking gene expression and oxidative damage of O2-stressed Clostridioides difficile by a multi-omics approach. Anaerobe, 53, p 94-107.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953292

  Uhde, A.-K., et al., 2018. Intact interleukin-10 receptor signaling protects from hippocampal damage elicited by experimental neurotropic virus infection of SJL mice. Scientific Reports, 8(1): 6106.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953293

  Heine, W., et al., 2018. Loss of CNFY toxin-induced inflammation drives Yersinia pseudotuberculosis into persistency. PLOS Pathogens, 14(2): e1006858.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367

  Sczyrba, A., et al., 2017. Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods, 14(11), p 1063-1071.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [18]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953296

  Pasztoi, M., et al., 2017. Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3 regulatory T cells. European Journal of Immunology, 47(12), p 2142-2152.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953297

  Nikolouli, E., et al., 2017. Alloantigen-Induced Regulatory T Cells Generated in Presence of Vitamin C Display Enhanced Stability of Foxp3 Expression and Promote Skin Allograft Acceptance. Frontiers in Immunology, 8: 748.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953298

  Garg, G., et al., 2017. Unique properties of thymic antigen-presenting cells promote epigenetic imprinting of alloantigen-specific regulatory T cells. Oncotarget, 8(22), p 35542-35557.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953299

  Nuss, A.M., et al., 2017. Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host–pathogen transcriptomes. Proceedings of the National Academy of Sciences, 114(5), p E791-E800.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953300

  Avican, U., et al., 2016. Transcriptomic and Phenotypic Analysis Reveals New Functions for the Tat Pathway in Yersinia pseudotuberculosis. Journal of Bacteriology, 198(20), p 2876-2886.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953301

  Yang, B.-H., et al., 2016. Foxp3+ T cells expressing RORγt represent a stable regulatory T-cell effector lineage with enhanced suppressive capacity during intestinal inflammation. Mucosal Immunology, 9(2), p 444-457.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100

  Nuss, A.M., et al., 2015. Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs. PLOS GENETICS, 11(3): e1005087.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953303

  Avican, K., et al., 2015. Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis. PLOS Pathogens, 11(1): e1004600.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [10]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953304

  Abdollahpour, H., et al., 2015. An AP4B1 frameshift mutation in siblings with intellectual disability and spastic tetraplegia further delineates the AP-4 deficiency syndrome. European Journal of Human Genetics, 23(2), p 256-259.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953305

  Meyer, F., Kurtz, S., & Beckstette, M., 2013. Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns. BMC Bioinformatics, 14(1): 226.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953309

  Meyer, F., et al., 2011. Structator: fast index-based search for RNA sequence-structure patterns. BMC Bioinformatics, 12(1): 214.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [7]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458

  Beckstette, M., et al., 2009. Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics, 25(24), p 3251-3258.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953311

  Heyne, S., et al., 2009. Lightweight comparison of RNAs based on exact sequence–structure matches. Bioinformatics, 25(16), p 2095-2102.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864

  Beckstette, M., et al., 2006. Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics, 7(1): 389.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613

  Sczyrba, A., et al., 2005. XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics, 6(1): 123.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529

  Beckstette, M., et al., 2004. Genlight: Interactive high-throughput sequence analysis and comparative genomics. Journal of Integrative Bioinformatics, 1(1), p 90-107.

  PUB | DOI
   
• [2]
  

  2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383536

  Beckstette, M., Sczyrba, A., & Selzer, P.M., 2004. Genlight: Interactive high-throughput sequence analysis and comparative genomics. In R. Giegerich, ed. German Conference on Bioinformatics. GCB 2004 ; October 4 - 6, 2004, Bielefeld, Germany . GI-Edition / Proceedings. no.53 Bonn: Gesellschaft für Informatik, pp. 179-186.

  PUB
   
• [1]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953316

  Marian, C.O., et al., 2003. The Maize Single myb histone 1 Gene, Smh1, Belongs to a Novel Gene Family and Encodes a Protein That Binds Telomere DNA Repeats in Vitro. Plant Physiology, 133(3), p 1336-1350.

  PUB | DOI | WoS | PubMed | Europe PMC