PUB - Publikationen an der Universität Bielefeld

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• [41]
  

  2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988204

  E. Diem, et al., “Epigenetic profiling of murine innate lymphoid cells under homeostatic and acute/memory-like inflammatory conditions”, Joint Conference of the Société Française d'Immunologie (SFI) and the Deutsche Gesellschaft für Immunologie (DGfI), 26–29 September, 2023, Strasbourg, France, European Journal of Immunology, vol. 53, Hoboken: Wiley, 2023, pp.238.

  PUB | WoS
   
• [40]
  

  2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988223

  Z. Yu, et al., “TBKBP1 is a novel player modulating the cytotoxic function of human cytomegalovirus-specific CD8+T cells”, European Journal of Immunology, vol. 53, 2023, pp. 113.

  PUB | WoS
   
• [39]
  

  2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988234

  V. Sasidharan, Nair, et al., “Role of ZEB2 in the function of antigen-specific human CD8+T cells”, European Journal of Immunology , vol. 53, 2023, pp. 143.

  PUB | WoS
   
• [38]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983209

  J. Hassa, et al., “Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics”, Microorganisms, vol. 11, 2023, : 2412.

  PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [37]
  

  2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2978079

  J. Boldt, et al., “Bursts in biosynthetic gene cluster transcription are accompanied by surges of natural compound production in the myxobacterium Sorangium sp.”, Microbial Biotechnology , 2023.

  PUB | PDF | DOI | PubMed | Europe PMC
   
• [36]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967522

  J. Pezoldt, et al., “Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34(+) stromal cell subsets”, Nature Communications, vol. 13, 2022, : 7227.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [35]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965101

  M. Beckstette, et al., “Profiling of epigenetic marker regions in murine ILCs under homeostatic and inflammatory conditions”, Journal of Experimental Medicine, vol. 219, 2022, : e20210663.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [34]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501

  D. Brandt, et al., “Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines”, Viruses, vol. 13, 2021, : 1870.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [33]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645

  I. Maus, et al., “Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics”, Environmental Microbiome, vol. 15, 2020, : 7.

  PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [32]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267

  J. Schulte-Schrepping, et al., “Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment”, Cell, vol. 182, 2020, pp. 1419-1440.e23.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [31]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953280

  H. Schäfer, et al., “The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis”, PLOS Genetics, vol. 16, 2020, : e1008275.

  PUB | DOI | WoS | PubMed | Europe PMC | Preprint
   
• [30]
  

  2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2953279

  M. Ciurkiewicz, et al., “Transkriptomanalysen in der Frühphase der Theilervirusinfektion zeigen Unterschiede in der angeborenen Immunantwort und Antigenpräsentation bei SJL- und C57BL/6-Mäusen”, 63. Jahrestagung der Fachgruppe Pathologie der Deutschen Veterinärmedizinischen Gesellschaft, Tierärztliche Praxis Ausgabe K: Kleintiere / Heimtiere, vol. 48, Stuttgart: Georg Thieme Verlag, 2020, pp.220.

  PUB | DOI
   
• [29]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953282

  J. Pezoldt, et al., “Innate Antiviral Specialization of Ly6C+CD45+ Splenic Red Pulp Stroma Instilled by Subset-Specific Regulation of Cellular Sensitivity to Type I Interferons”, SSRN Electronic Journal, 2020.

  PUB | DOI
   
• [28]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953283

  M. Ciurkiewicz, et al., “Early Transcriptional Differences in the Brain of Theiler’s Virus-infected Mouse Strains Reveal Delayed Antiviral Immune Responses in SJL/J mice”, Journal of Comparative Pathology, vol. 174, 2020, : 178.

  PUB | DOI
   
• [27]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953286

  C. Schmühl, et al., “Comparative Transcriptomic Profiling of O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation”, mSystems, vol. 4, 2019.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [26]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953287

  V. Berndt, et al., “Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli”, Scientific Reports, vol. 9, 2019, : 138.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2953285

  M. Kusmierek, et al., “Discovering Yersinia–Host Interactions by Tissue Dual RNA-Seq”, Pathogenic Yersinia. Methods and Protocols, V. Vadyvaloo and M.B. Lawrenz, eds., Methods in Molecular Biology, vol. 2010, New York, NY: Springer , 2019, pp.99-116.

  PUB | DOI
   
• [24]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953288

  M. Berges, et al., “Iron Regulation in Clostridioides difficile”, Frontiers in Microbiology, vol. 9, 2018, : 3183.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [23]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953289

  J. Pezoldt, et al., “Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes”, Nature Communications, vol. 9, 2018, : 3903.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953291

  M. Neumann-Schaal, et al., “Tracking gene expression and oxidative damage of O2-stressed Clostridioides difficile by a multi-omics approach”, Anaerobe, vol. 53, 2018, pp. 94-107.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953292

  A.-K. Uhde, et al., “Intact interleukin-10 receptor signaling protects from hippocampal damage elicited by experimental neurotropic virus infection of SJL mice”, Scientific Reports, vol. 8, 2018, : 6106.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953293

  W. Heine, et al., “Loss of CNFY toxin-induced inflammation drives Yersinia pseudotuberculosis into persistency”, PLOS Pathogens, vol. 14, 2018, : e1006858.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367

  A. Sczyrba, et al., “Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software”, Nature Methods, vol. 14, 2017, pp. 1063-1071.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [18]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953296

  M. Pasztoi, et al., “Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3 regulatory T cells”, European Journal of Immunology, vol. 47, 2017, pp. 2142-2152.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953297

  E. Nikolouli, et al., “Alloantigen-Induced Regulatory T Cells Generated in Presence of Vitamin C Display Enhanced Stability of Foxp3 Expression and Promote Skin Allograft Acceptance”, Frontiers in Immunology, vol. 8, 2017, : 748.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953298

  G. Garg, et al., “Unique properties of thymic antigen-presenting cells promote epigenetic imprinting of alloantigen-specific regulatory T cells”, Oncotarget, vol. 8, 2017, pp. 35542-35557.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953299

  A.M. Nuss, et al., “Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host–pathogen transcriptomes”, Proceedings of the National Academy of Sciences, vol. 114, 2017, pp. E791-E800.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953300

  U. Avican, et al., “Transcriptomic and Phenotypic Analysis Reveals New Functions for the Tat Pathway in Yersinia pseudotuberculosis”, Journal of Bacteriology, vol. 198, 2016, pp. 2876-2886.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953301

  B.-H. Yang, et al., “Foxp3+ T cells expressing RORγt represent a stable regulatory T-cell effector lineage with enhanced suppressive capacity during intestinal inflammation”, Mucosal Immunology, vol. 9, 2016, pp. 444-457.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100

  A.M. Nuss, et al., “Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs”, PLOS GENETICS, vol. 11, 2015, : e1005087.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953303

  K. Avican, et al., “Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis”, PLOS Pathogens, vol. 11, 2015, : e1004600.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [10]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953304

  H. Abdollahpour, et al., “An AP4B1 frameshift mutation in siblings with intellectual disability and spastic tetraplegia further delineates the AP-4 deficiency syndrome”, European Journal of Human Genetics, vol. 23, 2015, pp. 256-259.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953305

  F. Meyer, S. Kurtz, and M. Beckstette, “Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns”, BMC Bioinformatics, vol. 14, 2013, : 226.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953309

  F. Meyer, et al., “Structator: fast index-based search for RNA sequence-structure patterns”, BMC Bioinformatics, vol. 12, 2011, : 214.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [7]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458

  M. Beckstette, et al., “Significant speedup of database searches with HMMs by search space reduction with PSSM family models”, Bioinformatics, vol. 25, 2009, pp. 3251-3258.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953311

  S. Heyne, et al., “Lightweight comparison of RNAs based on exact sequence–structure matches”, Bioinformatics, vol. 25, 2009, pp. 2095-2102.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864

  M. Beckstette, et al., “Fast index based algorithms and software for matching position specific scoring matrices”, BMC Bioinformatics, vol. 7, 2006, : 389.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613

  A. Sczyrba, et al., “XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis”, BMC Genomics, vol. 6, 2005, : 123.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529

  M. Beckstette, et al., “Genlight: Interactive high-throughput sequence analysis and comparative genomics”, Journal of Integrative Bioinformatics, vol. 1, 2004, pp. 90-107.

  PUB | DOI
   
• [2]
  

  2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383536

  M. Beckstette, A. Sczyrba, and P.M. Selzer, “Genlight: Interactive high-throughput sequence analysis and comparative genomics”, German Conference on Bioinformatics. GCB 2004 ; October 4 - 6, 2004, Bielefeld, Germany , R. Giegerich, ed., GI-Edition / Proceedings, vol. 53, Bonn: Gesellschaft für Informatik, 2004, pp.179-186.

  PUB
   
• [1]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953316

  C.O. Marian, et al., “The Maize Single myb histone 1 Gene, Smh1, Belongs to a Novel Gene Family and Encodes a Protein That Binds Telomere DNA Repeats in Vitro”, Plant Physiology, vol. 133, 2003, pp. 1336-1350.

  PUB | DOI | WoS | PubMed | Europe PMC