PUB - Publikationen an der Universität Bielefeld

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• [41]
  

  2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988204

  Diem, E., Lu, C., Beckstette, M., Floess, S., and Lochner, M. (2023). “Epigenetic profiling of murine innate lymphoid cells under homeostatic and acute/memory-like inflammatory conditions” in Joint Conference of the Société Française d'Immunologie (SFI) and the Deutsche Gesellschaft für Immunologie (DGfI), 26–29 September, 2023, Strasbourg, France European Journal of Immunology, vol. 53, (Hoboken: Wiley), 238.

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• [40]
  

  2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988223

  Yu, Z., Nair, V., Bonifacius, A., Khan, F., Beckstette, M., Niemz, J., Hilgendorf, P., Pietzsch, B., Keller, A., Falk, C., et al. (2023). TBKBP1 is a novel player modulating the cytotoxic function of human cytomegalovirus-specific CD8+T cells. European Journal of Immunology 53, 113.

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• [39]
  

  2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988234

  Sasidharan, Nair, V., Yu, Z., Bonifacius, A., Beckstette, M., Niemz, J., Pietzsch, B., Busch, D., Cicin-Sain, L., Muller, F., Eiz-Vesper, B., et al. (2023). Role of ZEB2 in the function of antigen-specific human CD8+T cells. European Journal of Immunology 53, 143.

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• [38]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983209

  Hassa, J., Tubbesing, T. J., Maus, I., Heyer, R., Benndorf, D., Effenberger, M., Henke, C., Osterholz, B., Beckstette, M., Pühler, A., et al. (2023). Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics. Microorganisms 11:2412.

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• [37]
  

  2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2978079

  Boldt, J., Lukoseviciute, L., Fu, C., Steglich, M., Bunk, B., Junker, V., Gollasch, A., Trunkwalter, B., Mohr, K. I., Beckstette, M., et al. (2023). Bursts in biosynthetic gene cluster transcription are accompanied by surges of natural compound production in the myxobacterium Sorangium sp. Microbial Biotechnology .

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• [36]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967522

  Pezoldt, J., Wiechers, C., Zou, M., Litovchenko, M., Biocanin, M., Beckstette, M., Sitnik, K., Palatella, M., van Mierlo, G., Chen, W., et al. (2022). Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34(+) stromal cell subsets. Nature Communications 13:7227.

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• [35]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965101

  Beckstette, M., Lu, C. - W., Herppich, S., Diem, E. C., Ntalli, A., Ochel, A., Kruse, F., Pietzsch, B., Neumann, K., Huehn, J., et al. (2022). Profiling of epigenetic marker regions in murine ILCs under homeostatic and inflammatory conditions. Journal of Experimental Medicine 219:e20210663.

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• [34]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501

  Brandt, D., Simunovic, M., Busche, T., Haak, M., Belmann, P., Jünemann, S., Schulz, T., Klages, L. J., Vinke, S., Beckstette, M., et al. (2021). Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines. Viruses 13:1870.

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• [33]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645

  Maus, I., Klocke, M., Derenkó, J., Stolze, Y., Beckstette, M., Jost, C., Wibberg, D., Blom, J., Henke, C., Willenbücher, K., et al. (2020). Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics. Environmental Microbiome 15:7.

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• [32]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267

  Schulte-Schrepping, J., Reusch, N., Paclik, D., Baßler, K., Schlickeiser, S., Zhang, B., Krämer, B., Krammer, T., Brumhard, S., Bonaguro, L., et al. (2020). Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment. Cell 182, 1419-1440.e23.

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• [31]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953280

  Schäfer, H., Beckert, B., Frese, C. K., Steinchen, W., Nuss, A. M., Beckstette, M., Hantke, I., Driller, K., Sudzinová, P., Krásný, L., et al. (2020). The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis. PLOS Genetics 16:e1008275.

  PUB | DOI | WoS | PubMed | Europe PMC | Preprint
   
• [30]
  

  2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2953279

  Ciurkiewicz, M., Floess, S., Beckstette, M., Kummerfeld, M., Baumgärtner, W., Huehn, J., and Beineke, A. (2020). “Transkriptomanalysen in der Frühphase der Theilervirusinfektion zeigen Unterschiede in der angeborenen Immunantwort und Antigenpräsentation bei SJL- und C57BL/6-Mäusen” in 63. Jahrestagung der Fachgruppe Pathologie der Deutschen Veterinärmedizinischen Gesellschaft Tierärztliche Praxis Ausgabe K: Kleintiere / Heimtiere, vol. 48, (Stuttgart: Georg Thieme Verlag), 220.

  PUB | DOI
   
• [29]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953282

  Pezoldt, J., Erhard, F., Beckstette, M., Wiechers, C., Herppich, S., Bulat, T., Brendolan, A., Huehn, J., Kalinke, U., Müller, M., et al. (2020). Innate Antiviral Specialization of Ly6C+CD45+ Splenic Red Pulp Stroma Instilled by Subset-Specific Regulation of Cellular Sensitivity to Type I Interferons. SSRN Electronic Journal.

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• [28]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953283

  Ciurkiewicz, M., Floess, S., Beckstette, M., Kummerfeld, M., Baumgartner, W., Huehn, J., and Beineke, A. (2020). Early Transcriptional Differences in the Brain of Theiler’s Virus-infected Mouse Strains Reveal Delayed Antiviral Immune Responses in SJL/J mice. Journal of Comparative Pathology 174:178.

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• [27]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953286

  Schmühl, C., Beckstette, M., Heroven, A. K., Bunk, B., Spröer, C., McNally, A., Overmann, J., and Dersch, P. (2019). Comparative Transcriptomic Profiling of O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation. mSystems 4.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [26]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953287

  Berndt, V., Beckstette, M., Volk, M., Dersch, P., and Brönstrup, M. (2019). Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli. Scientific Reports 9:138.

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• [25]
  

  2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2953285

  Kusmierek, M., Heroven, A. K., Beckstette, M., Nuss, A. M., and Dersch, P. (2019). “Discovering Yersinia–Host Interactions by Tissue Dual RNA-Seq” in Pathogenic Yersinia. Methods and Protocols, Vadyvaloo, V., and Lawrenz, M. B. eds. Methods in Molecular Biology, vol. 2010, (New York, NY: Springer ), 99-116.

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• [24]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953288

  Berges, M., Michel, A. - M., Lassek, C., Nuss, A. M., Beckstette, M., Dersch, P., Riedel, K., Sievers, S., Becher, D., Otto, A., et al. (2018). Iron Regulation in Clostridioides difficile. Frontiers in Microbiology 9:3183.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [23]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953289

  Pezoldt, J., Pasztoi, M., Zou, M., Wiechers, C., Beckstette, M., Thierry, G. R., Vafadarnejad, E., Floess, S., Arampatzi, P., Buettner, M., et al. (2018). Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes. Nature Communications 9:3903.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953291

  Neumann-Schaal, M., Metzendorf, N. G., Troitzsch, D., Nuss, A. M., Hofmann, J. D., Beckstette, M., Dersch, P., Otto, A., and Sievers, S. (2018). Tracking gene expression and oxidative damage of O2-stressed Clostridioides difficile by a multi-omics approach. Anaerobe 53, 94-107.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953292

  Uhde, A. - K., Ciurkiewicz, M., Herder, V., Khan, M. A., Hensel, N., Claus, P., Beckstette, M., Teich, R., Floess, S., Baumgärtner, W., et al. (2018). Intact interleukin-10 receptor signaling protects from hippocampal damage elicited by experimental neurotropic virus infection of SJL mice. Scientific Reports 8:6106.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953293

  Heine, W., Beckstette, M., Heroven, A. K., Thiemann, S., Heise, U., Nuss, A. M., Pisano, F., Strowig, T., and Dersch, P. (2018). Loss of CNFY toxin-induced inflammation drives Yersinia pseudotuberculosis into persistency. PLOS Pathogens 14:e1006858.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367

  Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., et al. (2017). Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods 14, 1063-1071.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [18]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953296

  Pasztoi, M., Pezoldt, J., Beckstette, M., Lipps, C., Wirth, D., Rohde, M., Paloczi, K., Buzas, E. I., and Huehn, J. (2017). Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3 regulatory T cells. European Journal of Immunology 47, 2142-2152.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953297

  Nikolouli, E., Hardtke-Wolenski, M., Hapke, M., Beckstette, M., Geffers, R., Floess, S., Jaeckel, E., and Huehn, J. (2017). Alloantigen-Induced Regulatory T Cells Generated in Presence of Vitamin C Display Enhanced Stability of Foxp3 Expression and Promote Skin Allograft Acceptance. Frontiers in Immunology 8:748.

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• [16]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953298

  Garg, G., Nikolouli, E., Hardtke-Wolenski, M., Toker, A., Ohkura, N., Beckstette, M., Miyao, T., Geffers, R., Floess, S., Gerdes, N., et al. (2017). Unique properties of thymic antigen-presenting cells promote epigenetic imprinting of alloantigen-specific regulatory T cells. Oncotarget 8, 35542-35557.

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• [15]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953299

  Nuss, A. M., Beckstette, M., Pimenova, M., Schmühl, C., Opitz, W., Pisano, F., Heroven, A. K., and Dersch, P. (2017). Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host–pathogen transcriptomes. Proceedings of the National Academy of Sciences 114, E791-E800.

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• [14]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953300

  Avican, U., Beckstette, M., Heroven, A. K., Lavander, M., Dersch, P., and Forsberg, Å. (2016). Transcriptomic and Phenotypic Analysis Reveals New Functions for the Tat Pathway in Yersinia pseudotuberculosis. Journal of Bacteriology 198, 2876-2886.

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• [13]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953301

  Yang, B. - H., Hagemann, S., Mamareli, P., Lauer, U., Hoffmann, U., Beckstette, M., Föhse, L., Prinz, I., Pezoldt, J., Suerbaum, S., et al. (2016). Foxp3+ T cells expressing RORγt represent a stable regulatory T-cell effector lineage with enhanced suppressive capacity during intestinal inflammation. Mucosal Immunology 9, 444-457.

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• [12]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100

  Nuss, A. M., Heroven, A. K., Waldmann, B., Reinkensmeier, J., Jarek, M., Beckstette, M., and Dersch, P. (2015). Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs. PLOS GENETICS 11:e1005087.

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• [11]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953303

  Avican, K., Fahlgren, A., Huss, M., Heroven, A. K., Beckstette, M., Dersch, P., and Fällman, M. (2015). Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis. PLOS Pathogens 11:e1004600.

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• [10]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953304

  Abdollahpour, H., Alawi, M., Kortüm, F., Beckstette, M., Seemanova, E., Komárek, V., Rosenberger, G., and Kutsche, K. (2015). An AP4B1 frameshift mutation in siblings with intellectual disability and spastic tetraplegia further delineates the AP-4 deficiency syndrome. European Journal of Human Genetics 23, 256-259.

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• [9]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953305

  Meyer, F., Kurtz, S., and Beckstette, M. (2013). Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns. BMC Bioinformatics 14:226.

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• [8]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953309

  Meyer, F., Kurtz, S., Backofen, R., Will, S., and Beckstette, M. (2011). Structator: fast index-based search for RNA sequence-structure patterns. BMC Bioinformatics 12:214.

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• [7]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458

  Beckstette, M., Homann, R., Giegerich, R., and Kurtz, S. (2009). Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics 25, 3251-3258.

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• [6]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953311

  Heyne, S., Will, S., Beckstette, M., and Backofen, R. (2009). Lightweight comparison of RNAs based on exact sequence–structure matches. Bioinformatics 25, 2095-2102.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864

  Beckstette, M., Homann, R., Giegerich, R., and Kurtz, S. (2006). Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics 7:389.

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• [4]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613

  Sczyrba, A., Beckstette, M., Brivanlou, A. H., Giegerich, R., and Altmann, C. R. (2005). XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics 6:123.

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• [3]
  

  2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529

  Beckstette, M., Mailänder, J. T., Marhöfer, R. J., Sczyrba, A., Ohlebusch, E., Giegerich, R., and Selzer, P. M. (2004). Genlight: Interactive high-throughput sequence analysis and comparative genomics. Journal of Integrative Bioinformatics 1, 90-107.

  PUB | DOI
   
• [2]
  

  2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383536

  Beckstette, M., Sczyrba, A., and Selzer, P. M. (2004). “Genlight: Interactive high-throughput sequence analysis and comparative genomics” in German Conference on Bioinformatics. GCB 2004 ; October 4 - 6, 2004, Bielefeld, Germany , Giegerich, R. ed. GI-Edition / Proceedings, vol. 53, (Bonn: Gesellschaft für Informatik), 179-186.

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• [1]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953316

  Marian, C. O., Bordoli, S. J., Goltz, M., Santarella, R. A., Jackson, L. P., Danilevskaya, O., Beckstette, M., Meeley, R., and Bass, H. W. (2003). The Maize Single myb histone 1 Gene, Smh1, Belongs to a Novel Gene Family and Encodes a Protein That Binds Telomere DNA Repeats in Vitro. Plant Physiology 133, 1336-1350.

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