Michael Beckstette

mbeckste@cebitec.uni-bielefeld.de
PEVZ-ID
42632

41 Publikationen

Alle markieren

  • [41]
    2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988204
    Diem, E., Lu, C., Beckstette, M., Floess, S., & Lochner, M. (2023). Epigenetic profiling of murine innate lymphoid cells under homeostatic and acute/memory-like inflammatory conditions. Joint Conference of the Société Française d'Immunologie (SFI) and the Deutsche Gesellschaft für Immunologie (DGfI), 26–29 September, 2023, Strasbourg, France, European Journal of Immunology, 53, 238. Hoboken: Wiley.
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  • [40]
    2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988223
    Yu, Z., Nair, V., Bonifacius, A., Khan, F., Beckstette, M., Niemz, J., Hilgendorf, P., et al. (2023). TBKBP1 is a novel player modulating the cytotoxic function of human cytomegalovirus-specific CD8+T cells. European Journal of Immunology, 53(S2), 113.
    PUB | WoS
     
  • [39]
    2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988234
    Sasidharan, Nair, V., Yu, Z., Bonifacius, A., Beckstette, M., Niemz, J., Pietzsch, B., Busch, D., et al. (2023). Role of ZEB2 in the function of antigen-specific human CD8+T cells. European Journal of Immunology , 53(S2), 143.
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  • [38]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983209 OA
    Hassa, J., Tubbesing, T. J., Maus, I., Heyer, R., Benndorf, D., Effenberger, M., Henke, C., et al. (2023). Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics. Microorganisms, 11(10), 2412. https://doi.org/10.3390/microorganisms11102412
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  • [37]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2978079 OA
    Boldt, J., Lukoseviciute, L., Fu, C., Steglich, M., Bunk, B., Junker, V., Gollasch, A., et al. (2023). Bursts in biosynthetic gene cluster transcription are accompanied by surges of natural compound production in the myxobacterium Sorangium sp. Microbial Biotechnology . https://doi.org/10.1111/1751-7915.14246
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  • [36]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967522
    Pezoldt, J., Wiechers, C., Zou, M., Litovchenko, M., Biocanin, M., Beckstette, M., Sitnik, K., et al. (2022). Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34(+) stromal cell subsets. Nature Communications, 13(1), 7227. https://doi.org/10.1038/s41467-022-34868-4
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  • [35]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965101
    Beckstette, M., Lu, C. - W., Herppich, S., Diem, E. C., Ntalli, A., Ochel, A., Kruse, F., et al. (2022). Profiling of epigenetic marker regions in murine ILCs under homeostatic and inflammatory conditions. Journal of Experimental Medicine, 219(10), e20210663. https://doi.org/10.1084/jem.20210663
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  • [34]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501 OA
    Brandt, D., Simunovic, M., Busche, T., Haak, M., Belmann, P., Jünemann, S., Schulz, T., et al. (2021). Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines. Viruses, 13(9), 1870. https://doi.org/10.3390/v13091870
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  • [33]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645 OA
    Maus, I., Klocke, M., Derenkó, J., Stolze, Y., Beckstette, M., Jost, C., Wibberg, D., et al. (2020). Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics. Environmental Microbiome, 15(1), 7. https://doi.org/10.1186/s40793-020-00354-x
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  • [32]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267
    Schulte-Schrepping, J., Reusch, N., Paclik, D., Baßler, K., Schlickeiser, S., Zhang, B., Krämer, B., et al. (2020). Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment. Cell, 182(6), 1419-1440.e23. https://doi.org/10.1016/j.cell.2020.08.001
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  • [31]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953280
    Schäfer, H., Beckert, B., Frese, C. K., Steinchen, W., Nuss, A. M., Beckstette, M., Hantke, I., et al. (2020). The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis. PLOS Genetics, 16(3), e1008275. https://doi.org/10.1371/journal.pgen.1008275
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  • [30]
    2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2953279
    Ciurkiewicz, M., Floess, S., Beckstette, M., Kummerfeld, M., Baumgärtner, W., Huehn, J., & Beineke, A. (2020). Transkriptomanalysen in der Frühphase der Theilervirusinfektion zeigen Unterschiede in der angeborenen Immunantwort und Antigenpräsentation bei SJL- und C57BL/6-Mäusen. 63. Jahrestagung der Fachgruppe Pathologie der Deutschen Veterinärmedizinischen Gesellschaft, Tierärztliche Praxis Ausgabe K: Kleintiere / Heimtiere, 48, 220. Stuttgart: Georg Thieme Verlag. https://doi.org/10.1055/s-0040-1712588
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  • [29]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953282
    Pezoldt, J., Erhard, F., Beckstette, M., Wiechers, C., Herppich, S., Bulat, T., Brendolan, A., et al. (2020). Innate Antiviral Specialization of Ly6C+CD45+ Splenic Red Pulp Stroma Instilled by Subset-Specific Regulation of Cellular Sensitivity to Type I Interferons. SSRN Electronic Journal. https://doi.org/10.2139/ssrn.3705636
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  • [28]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953283
    Ciurkiewicz, M., Floess, S., Beckstette, M., Kummerfeld, M., Baumgartner, W., Huehn, J., & Beineke, A. (2020). Early Transcriptional Differences in the Brain of Theiler’s Virus-infected Mouse Strains Reveal Delayed Antiviral Immune Responses in SJL/J mice. Journal of Comparative Pathology, 174, 178. https://doi.org/10.1016/j.jcpa.2019.10.124
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  • [27]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953286
    Schmühl, C., Beckstette, M., Heroven, A. K., Bunk, B., Spröer, C., McNally, A., Overmann, J., et al. (2019). Comparative Transcriptomic Profiling of O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation. mSystems, 4(2). https://doi.org/10.1128/mSystems.00239-18
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  • [26]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953287
    Berndt, V., Beckstette, M., Volk, M., Dersch, P., & Brönstrup, M. (2019). Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli. Scientific Reports, 9(1), 138. https://doi.org/10.1038/s41598-018-36932-w
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  • [25]
    2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2953285
    Kusmierek, M., Heroven, A. K., Beckstette, M., Nuss, A. M., & Dersch, P. (2019). Discovering Yersinia–Host Interactions by Tissue Dual RNA-Seq. In V. Vadyvaloo & M. B. Lawrenz (Eds.), Methods in Molecular Biology: Vol. 2010. Pathogenic Yersinia. Methods and Protocols (pp. 99-116). New York, NY: Springer . https://doi.org/10.1007/978-1-4939-9541-7_8
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  • [24]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953288
    Berges, M., Michel, A. - M., Lassek, C., Nuss, A. M., Beckstette, M., Dersch, P., Riedel, K., et al. (2018). Iron Regulation in Clostridioides difficile. Frontiers in Microbiology, 9, 3183. https://doi.org/10.3389/fmicb.2018.03183
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  • [23]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953289
    Pezoldt, J., Pasztoi, M., Zou, M., Wiechers, C., Beckstette, M., Thierry, G. R., Vafadarnejad, E., et al. (2018). Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes. Nature Communications, 9(1), 3903. https://doi.org/10.1038/s41467-018-06423-7
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  • [22]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953291
    Neumann-Schaal, M., Metzendorf, N. G., Troitzsch, D., Nuss, A. M., Hofmann, J. D., Beckstette, M., Dersch, P., et al. (2018). Tracking gene expression and oxidative damage of O2-stressed Clostridioides difficile by a multi-omics approach. Anaerobe, 53, 94-107. https://doi.org/10.1016/j.anaerobe.2018.05.018
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  • [21]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953292
    Uhde, A. - K., Ciurkiewicz, M., Herder, V., Khan, M. A., Hensel, N., Claus, P., Beckstette, M., et al. (2018). Intact interleukin-10 receptor signaling protects from hippocampal damage elicited by experimental neurotropic virus infection of SJL mice. Scientific Reports, 8(1), 6106. https://doi.org/10.1038/s41598-018-24378-z
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  • [20]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953293
    Heine, W., Beckstette, M., Heroven, A. K., Thiemann, S., Heise, U., Nuss, A. M., Pisano, F., et al. (2018). Loss of CNFY toxin-induced inflammation drives Yersinia pseudotuberculosis into persistency. PLOS Pathogens, 14(2), e1006858. https://doi.org/10.1371/journal.ppat.1006858
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  • [19]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
    Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., et al. (2017). Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods, 14(11), 1063-1071. https://doi.org/10.1038/nmeth.4458
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [18]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953296
    Pasztoi, M., Pezoldt, J., Beckstette, M., Lipps, C., Wirth, D., Rohde, M., Paloczi, K., et al. (2017). Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3 regulatory T cells. European Journal of Immunology, 47(12), 2142-2152. https://doi.org/10.1002/eji.201746960
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  • [17]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953297
    Nikolouli, E., Hardtke-Wolenski, M., Hapke, M., Beckstette, M., Geffers, R., Floess, S., Jaeckel, E., et al. (2017). Alloantigen-Induced Regulatory T Cells Generated in Presence of Vitamin C Display Enhanced Stability of Foxp3 Expression and Promote Skin Allograft Acceptance. Frontiers in Immunology, 8, 748. https://doi.org/10.3389/fimmu.2017.00748
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  • [16]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953298
    Garg, G., Nikolouli, E., Hardtke-Wolenski, M., Toker, A., Ohkura, N., Beckstette, M., Miyao, T., et al. (2017). Unique properties of thymic antigen-presenting cells promote epigenetic imprinting of alloantigen-specific regulatory T cells. Oncotarget, 8(22), 35542-35557. https://doi.org/10.18632/oncotarget.16221
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  • [15]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953299
    Nuss, A. M., Beckstette, M., Pimenova, M., Schmühl, C., Opitz, W., Pisano, F., Heroven, A. K., et al. (2017). Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host–pathogen transcriptomes. Proceedings of the National Academy of Sciences, 114(5), E791-E800. https://doi.org/10.1073/pnas.1613405114
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  • [14]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953300
    Avican, U., Beckstette, M., Heroven, A. K., Lavander, M., Dersch, P., & Forsberg, Å. (2016). Transcriptomic and Phenotypic Analysis Reveals New Functions for the Tat Pathway in Yersinia pseudotuberculosis. Journal of Bacteriology, 198(20), 2876-2886. https://doi.org/10.1128/JB.00352-16
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  • [13]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953301
    Yang, B. - H., Hagemann, S., Mamareli, P., Lauer, U., Hoffmann, U., Beckstette, M., Föhse, L., et al. (2016). Foxp3+ T cells expressing RORγt represent a stable regulatory T-cell effector lineage with enhanced suppressive capacity during intestinal inflammation. Mucosal Immunology, 9(2), 444-457. https://doi.org/10.1038/mi.2015.74
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  • [12]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100
    Nuss, A. M., Heroven, A. K., Waldmann, B., Reinkensmeier, J., Jarek, M., Beckstette, M., & Dersch, P. (2015). Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs. PLOS GENETICS, 11(3), e1005087. https://doi.org/10.1371/journal.pgen.1005087
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  • [11]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953303
    Avican, K., Fahlgren, A., Huss, M., Heroven, A. K., Beckstette, M., Dersch, P., & Fällman, M. (2015). Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis. PLOS Pathogens, 11(1), e1004600. https://doi.org/10.1371/journal.ppat.1004600
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  • [10]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953304
    Abdollahpour, H., Alawi, M., Kortüm, F., Beckstette, M., Seemanova, E., Komárek, V., Rosenberger, G., et al. (2015). An AP4B1 frameshift mutation in siblings with intellectual disability and spastic tetraplegia further delineates the AP-4 deficiency syndrome. European Journal of Human Genetics, 23(2), 256-259. https://doi.org/10.1038/ejhg.2014.73
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  • [9]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953305
    Meyer, F., Kurtz, S., & Beckstette, M. (2013). Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns. BMC Bioinformatics, 14(1), 226. https://doi.org/10.1186/1471-2105-14-226
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  • [8]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953309
    Meyer, F., Kurtz, S., Backofen, R., Will, S., & Beckstette, M. (2011). Structator: fast index-based search for RNA sequence-structure patterns. BMC Bioinformatics, 12(1), 214. https://doi.org/10.1186/1471-2105-12-214
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  • [7]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
    Beckstette, M., Homann, R., Giegerich, R., & Kurtz, S. (2009). Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics, 25(24), 3251-3258. https://doi.org/10.1093/bioinformatics/btp593
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  • [6]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953311
    Heyne, S., Will, S., Beckstette, M., & Backofen, R. (2009). Lightweight comparison of RNAs based on exact sequence–structure matches. Bioinformatics, 25(16), 2095-2102. https://doi.org/10.1093/bioinformatics/btp065
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  • [5]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864 OA
    Beckstette, M., Homann, R., Giegerich, R., & Kurtz, S. (2006). Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics, 7(1), 389. https://doi.org/10.1186/1471-2105-7-389
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  • [4]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613 OA
    Sczyrba, A., Beckstette, M., Brivanlou, A. H., Giegerich, R., & Altmann, C. R. (2005). XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics, 6(1), 123. https://doi.org/10.1186/1471-2164-6-123
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  • [3]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529
    Beckstette, M., Mailänder, J. T., Marhöfer, R. J., Sczyrba, A., Ohlebusch, E., Giegerich, R., & Selzer, P. M. (2004). Genlight: Interactive high-throughput sequence analysis and comparative genomics. Journal of Integrative Bioinformatics, 1(1), 90-107. https://doi.org/10.2390/biecoll-jib-2004-8
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  • [2]
    2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383536
    Beckstette, M., Sczyrba, A., & Selzer, P. M. (2004). Genlight: Interactive high-throughput sequence analysis and comparative genomics. In R. Giegerich (Ed.), GI-Edition / Proceedings: Vol. 53. German Conference on Bioinformatics. GCB 2004 ; October 4 - 6, 2004, Bielefeld, Germany (pp. 179-186). Bonn: Gesellschaft für Informatik.
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  • [1]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953316
    Marian, C. O., Bordoli, S. J., Goltz, M., Santarella, R. A., Jackson, L. P., Danilevskaya, O., Beckstette, M., et al. (2003). The Maize Single myb histone 1 Gene, Smh1, Belongs to a Novel Gene Family and Encodes a Protein That Binds Telomere DNA Repeats in Vitro. Plant Physiology, 133(3), 1336-1350. https://doi.org/10.1104/pp.103.026856
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