34 Publikationen

Alle markieren

[34]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501 OA
Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines
Brandt D, Simunovic M, Busche T, Haak M, Belmann P, Jünemann S, Schulz T, Klages LJ, Vinke S, Beckstette M, Pohl E, et al. (2021)
Viruses 13(9): 1870.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[33]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645 OA
Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Maus I, Klocke M, Derenkó J, Stolze Y, Beckstette M, Jost C, Wibberg D, Blom J, Henke C, Willenbücher K, Rumming M, et al. (2020)
Environmental Microbiome 15(1): 7.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[32]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267
Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment
Schulte-Schrepping J, Reusch N, Paclik D, Baßler K, Schlickeiser S, Zhang B, Krämer B, Krammer T, Brumhard S, Bonaguro L, De Domenico E, et al. (2020)
Cell 182(6): 1419-1440.e23.
PUB | DOI | WoS | PubMed | Europe PMC
 
[31]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953280
The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis
Schäfer H, Beckert B, Frese CK, Steinchen W, Nuss AM, Beckstette M, Hantke I, Driller K, Sudzinová P, Krásný L, Kaever V, et al. (2020)
PLOS Genetics 16(3): e1008275.
PUB | DOI | WoS | PubMed | Europe PMC | Preprint
 
[30]
2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2953279
Transkriptomanalysen in der Frühphase der Theilervirusinfektion zeigen Unterschiede in der angeborenen Immunantwort und Antigenpräsentation bei SJL- und C57BL/6-Mäusen
Ciurkiewicz M, Floess S, Beckstette M, Kummerfeld M, Baumgärtner W, Huehn J, Beineke A (2020)
In: 63. Jahrestagung der Fachgruppe Pathologie der Deutschen Veterinärmedizinischen Gesellschaft. Tierärztliche Praxis Ausgabe K: Kleintiere / Heimtiere, 48(03). Stuttgart: Georg Thieme Verlag: 220.
PUB | DOI
 
[29]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953282
Innate Antiviral Specialization of Ly6C+CD45+ Splenic Red Pulp Stroma Instilled by Subset-Specific Regulation of Cellular Sensitivity to Type I Interferons
Pezoldt J, Erhard F, Beckstette M, Wiechers C, Herppich S, Bulat T, Brendolan A, Huehn J, Kalinke U, Müller M, Strobl B, et al. (2020)
SSRN Electronic Journal.
PUB | DOI
 
[28]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953283
Early Transcriptional Differences in the Brain of Theiler’s Virus-infected Mouse Strains Reveal Delayed Antiviral Immune Responses in SJL/J mice
Ciurkiewicz M, Floess S, Beckstette M, Kummerfeld M, Baumgartner W, Huehn J, Beineke A (2020)
Journal of Comparative Pathology 174: 178.
PUB | DOI
 
[27]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953286
Comparative Transcriptomic Profiling of O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation
Schmühl C, Beckstette M, Heroven AK, Bunk B, Spröer C, McNally A, Overmann J, Dersch P (2019)
mSystems 4(2).
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953287
Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli
Berndt V, Beckstette M, Volk M, Dersch P, Brönstrup M (2019)
Scientific Reports 9(1): 138.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2953285
Discovering Yersinia–Host Interactions by Tissue Dual RNA-Seq
Kusmierek M, Heroven AK, Beckstette M, Nuss AM, Dersch P (2019)
In: Pathogenic Yersinia. Methods and Protocols. Vadyvaloo V, Lawrenz MB (Eds); Methods in Molecular Biology, 2010. New York, NY: Springer : 99-116.
PUB | DOI
 
[24]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953288
Iron Regulation in Clostridioides difficile
Berges M, Michel A-M, Lassek C, Nuss AM, Beckstette M, Dersch P, Riedel K, Sievers S, Becher D, Otto A, Maaß S, et al. (2018)
Frontiers in Microbiology 9: 3183.
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953289
Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes
Pezoldt J, Pasztoi M, Zou M, Wiechers C, Beckstette M, Thierry GR, Vafadarnejad E, Floess S, Arampatzi P, Buettner M, Schweer J, et al. (2018)
Nature Communications 9(1): 3903.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953291
Tracking gene expression and oxidative damage of O2-stressed Clostridioides difficile by a multi-omics approach
Neumann-Schaal M, Metzendorf NG, Troitzsch D, Nuss AM, Hofmann JD, Beckstette M, Dersch P, Otto A, Sievers S (2018)
Anaerobe 53: 94-107.
PUB | DOI | WoS | PubMed | Europe PMC
 
[21]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953292
Intact interleukin-10 receptor signaling protects from hippocampal damage elicited by experimental neurotropic virus infection of SJL mice
Uhde A-K, Ciurkiewicz M, Herder V, Khan MA, Hensel N, Claus P, Beckstette M, Teich R, Floess S, Baumgärtner W, Jung K, et al. (2018)
Scientific Reports 8(1): 6106.
PUB | DOI | WoS | PubMed | Europe PMC
 
[20]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953293
Loss of CNFY toxin-induced inflammation drives Yersinia pseudotuberculosis into persistency
Heine W, Beckstette M, Heroven AK, Thiemann S, Heise U, Nuss AM, Pisano F, Strowig T, Dersch P (2018)
PLOS Pathogens 14(2): e1006858.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, et al. (2017)
Nature Methods 14(11): 1063-1071.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[18]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953296
Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3 regulatory T cells
Pasztoi M, Pezoldt J, Beckstette M, Lipps C, Wirth D, Rohde M, Paloczi K, Buzas EI, Huehn J (2017)
European Journal of Immunology 47(12): 2142-2152.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953297
Alloantigen-Induced Regulatory T Cells Generated in Presence of Vitamin C Display Enhanced Stability of Foxp3 Expression and Promote Skin Allograft Acceptance
Nikolouli E, Hardtke-Wolenski M, Hapke M, Beckstette M, Geffers R, Floess S, Jaeckel E, Huehn J (2017)
Frontiers in Immunology 8: 748.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953298
Unique properties of thymic antigen-presenting cells promote epigenetic imprinting of alloantigen-specific regulatory T cells
Garg G, Nikolouli E, Hardtke-Wolenski M, Toker A, Ohkura N, Beckstette M, Miyao T, Geffers R, Floess S, Gerdes N, Lutgens E, et al. (2017)
Oncotarget 8(22): 35542-35557.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953299
Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host–pathogen transcriptomes
Nuss AM, Beckstette M, Pimenova M, Schmühl C, Opitz W, Pisano F, Heroven AK, Dersch P (2017)
Proceedings of the National Academy of Sciences 114(5): E791-E800.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953300
Transcriptomic and Phenotypic Analysis Reveals New Functions for the Tat Pathway in Yersinia pseudotuberculosis
Avican U, Beckstette M, Heroven AK, Lavander M, Dersch P, Forsberg Å (2016)
Journal of Bacteriology 198(20): 2876-2886.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953301
Foxp3+ T cells expressing RORγt represent a stable regulatory T-cell effector lineage with enhanced suppressive capacity during intestinal inflammation
Yang B-H, Hagemann S, Mamareli P, Lauer U, Hoffmann U, Beckstette M, Föhse L, Prinz I, Pezoldt J, Suerbaum S, Sparwasser T, et al. (2016)
Mucosal Immunology 9(2): 444-457.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100
Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs
Nuss AM, Heroven AK, Waldmann B, Reinkensmeier J, Jarek M, Beckstette M, Dersch P (2015)
PLOS GENETICS 11(3): e1005087.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953303
Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis
Avican K, Fahlgren A, Huss M, Heroven AK, Beckstette M, Dersch P, Fällman M (2015)
PLOS Pathogens 11(1): e1004600.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953304
An AP4B1 frameshift mutation in siblings with intellectual disability and spastic tetraplegia further delineates the AP-4 deficiency syndrome
Abdollahpour H, Alawi M, Kortüm F, Beckstette M, Seemanova E, Komárek V, Rosenberger G, Kutsche K (2015)
European Journal of Human Genetics 23(2): 256-259.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953305
Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns
Meyer F, Kurtz S, Beckstette M (2013)
BMC Bioinformatics 14(1): 226.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953309
Structator: fast index-based search for RNA sequence-structure patterns
Meyer F, Kurtz S, Backofen R, Will S, Beckstette M (2011)
BMC Bioinformatics 12(1): 214.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
Significant speedup of database searches with HMMs by search space reduction with PSSM family models
Beckstette M, Homann R, Giegerich R, Kurtz S (2009)
Bioinformatics 25(24): 3251-3258.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953311
Lightweight comparison of RNAs based on exact sequence–structure matches
Heyne S, Will S, Beckstette M, Backofen R (2009)
Bioinformatics 25(16): 2095-2102.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864 OA
Fast index based algorithms and software for matching position specific scoring matrices
Beckstette M, Homann R, Giegerich R, Kurtz S (2006)
BMC Bioinformatics 7(1): 389.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[4]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613 OA
XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
Sczyrba A, Beckstette M, Brivanlou AH, Giegerich R, Altmann CR (2005)
BMC Genomics 6(1): 123.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[3]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529
Genlight: Interactive high-throughput sequence analysis and comparative genomics
Beckstette M, Mailänder JT, Marhöfer RJ, Sczyrba A, Ohlebusch E, Giegerich R, Selzer PM (2004)
Journal of Integrative Bioinformatics 1(1): 90-107.
PUB | DOI
 
[2]
2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383536
Genlight: Interactive high-throughput sequence analysis and comparative genomics
Beckstette M, Sczyrba A, Selzer PM (2004)
In: German Conference on Bioinformatics. GCB 2004 ; October 4 - 6, 2004, Bielefeld, Germany . Giegerich R (Ed); GI-Edition / Proceedings, 53. Bonn: Gesellschaft für Informatik: 179-186.
PUB
 
[1]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953316
The Maize Single myb histone 1 Gene, Smh1, Belongs to a Novel Gene Family and Encodes a Protein That Binds Telomere DNA Repeats in Vitro
Marian CO, Bordoli SJ, Goltz M, Santarella RA, Jackson LP, Danilevskaya O, Beckstette M, Meeley R, Bass HW (2003)
Plant Physiology 133(3): 1336-1350.
PUB | DOI | WoS | PubMed | Europe PMC
 

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34 Publikationen

Alle markieren

[34]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501 OA
Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines
Brandt D, Simunovic M, Busche T, Haak M, Belmann P, Jünemann S, Schulz T, Klages LJ, Vinke S, Beckstette M, Pohl E, et al. (2021)
Viruses 13(9): 1870.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[33]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645 OA
Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Maus I, Klocke M, Derenkó J, Stolze Y, Beckstette M, Jost C, Wibberg D, Blom J, Henke C, Willenbücher K, Rumming M, et al. (2020)
Environmental Microbiome 15(1): 7.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[32]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267
Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment
Schulte-Schrepping J, Reusch N, Paclik D, Baßler K, Schlickeiser S, Zhang B, Krämer B, Krammer T, Brumhard S, Bonaguro L, De Domenico E, et al. (2020)
Cell 182(6): 1419-1440.e23.
PUB | DOI | WoS | PubMed | Europe PMC
 
[31]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953280
The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis
Schäfer H, Beckert B, Frese CK, Steinchen W, Nuss AM, Beckstette M, Hantke I, Driller K, Sudzinová P, Krásný L, Kaever V, et al. (2020)
PLOS Genetics 16(3): e1008275.
PUB | DOI | WoS | PubMed | Europe PMC | Preprint
 
[30]
2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2953279
Transkriptomanalysen in der Frühphase der Theilervirusinfektion zeigen Unterschiede in der angeborenen Immunantwort und Antigenpräsentation bei SJL- und C57BL/6-Mäusen
Ciurkiewicz M, Floess S, Beckstette M, Kummerfeld M, Baumgärtner W, Huehn J, Beineke A (2020)
In: 63. Jahrestagung der Fachgruppe Pathologie der Deutschen Veterinärmedizinischen Gesellschaft. Tierärztliche Praxis Ausgabe K: Kleintiere / Heimtiere, 48(03). Stuttgart: Georg Thieme Verlag: 220.
PUB | DOI
 
[29]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953282
Innate Antiviral Specialization of Ly6C+CD45+ Splenic Red Pulp Stroma Instilled by Subset-Specific Regulation of Cellular Sensitivity to Type I Interferons
Pezoldt J, Erhard F, Beckstette M, Wiechers C, Herppich S, Bulat T, Brendolan A, Huehn J, Kalinke U, Müller M, Strobl B, et al. (2020)
SSRN Electronic Journal.
PUB | DOI
 
[28]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953283
Early Transcriptional Differences in the Brain of Theiler’s Virus-infected Mouse Strains Reveal Delayed Antiviral Immune Responses in SJL/J mice
Ciurkiewicz M, Floess S, Beckstette M, Kummerfeld M, Baumgartner W, Huehn J, Beineke A (2020)
Journal of Comparative Pathology 174: 178.
PUB | DOI
 
[27]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953286
Comparative Transcriptomic Profiling of O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation
Schmühl C, Beckstette M, Heroven AK, Bunk B, Spröer C, McNally A, Overmann J, Dersch P (2019)
mSystems 4(2).
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953287
Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli
Berndt V, Beckstette M, Volk M, Dersch P, Brönstrup M (2019)
Scientific Reports 9(1): 138.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2953285
Discovering Yersinia–Host Interactions by Tissue Dual RNA-Seq
Kusmierek M, Heroven AK, Beckstette M, Nuss AM, Dersch P (2019)
In: Pathogenic Yersinia. Methods and Protocols. Vadyvaloo V, Lawrenz MB (Eds); Methods in Molecular Biology, 2010. New York, NY: Springer : 99-116.
PUB | DOI
 
[24]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953288
Iron Regulation in Clostridioides difficile
Berges M, Michel A-M, Lassek C, Nuss AM, Beckstette M, Dersch P, Riedel K, Sievers S, Becher D, Otto A, Maaß S, et al. (2018)
Frontiers in Microbiology 9: 3183.
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953289
Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes
Pezoldt J, Pasztoi M, Zou M, Wiechers C, Beckstette M, Thierry GR, Vafadarnejad E, Floess S, Arampatzi P, Buettner M, Schweer J, et al. (2018)
Nature Communications 9(1): 3903.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953291
Tracking gene expression and oxidative damage of O2-stressed Clostridioides difficile by a multi-omics approach
Neumann-Schaal M, Metzendorf NG, Troitzsch D, Nuss AM, Hofmann JD, Beckstette M, Dersch P, Otto A, Sievers S (2018)
Anaerobe 53: 94-107.
PUB | DOI | WoS | PubMed | Europe PMC
 
[21]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953292
Intact interleukin-10 receptor signaling protects from hippocampal damage elicited by experimental neurotropic virus infection of SJL mice
Uhde A-K, Ciurkiewicz M, Herder V, Khan MA, Hensel N, Claus P, Beckstette M, Teich R, Floess S, Baumgärtner W, Jung K, et al. (2018)
Scientific Reports 8(1): 6106.
PUB | DOI | WoS | PubMed | Europe PMC
 
[20]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953293
Loss of CNFY toxin-induced inflammation drives Yersinia pseudotuberculosis into persistency
Heine W, Beckstette M, Heroven AK, Thiemann S, Heise U, Nuss AM, Pisano F, Strowig T, Dersch P (2018)
PLOS Pathogens 14(2): e1006858.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, et al. (2017)
Nature Methods 14(11): 1063-1071.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[18]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953296
Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3 regulatory T cells
Pasztoi M, Pezoldt J, Beckstette M, Lipps C, Wirth D, Rohde M, Paloczi K, Buzas EI, Huehn J (2017)
European Journal of Immunology 47(12): 2142-2152.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953297
Alloantigen-Induced Regulatory T Cells Generated in Presence of Vitamin C Display Enhanced Stability of Foxp3 Expression and Promote Skin Allograft Acceptance
Nikolouli E, Hardtke-Wolenski M, Hapke M, Beckstette M, Geffers R, Floess S, Jaeckel E, Huehn J (2017)
Frontiers in Immunology 8: 748.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953298
Unique properties of thymic antigen-presenting cells promote epigenetic imprinting of alloantigen-specific regulatory T cells
Garg G, Nikolouli E, Hardtke-Wolenski M, Toker A, Ohkura N, Beckstette M, Miyao T, Geffers R, Floess S, Gerdes N, Lutgens E, et al. (2017)
Oncotarget 8(22): 35542-35557.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953299
Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host–pathogen transcriptomes
Nuss AM, Beckstette M, Pimenova M, Schmühl C, Opitz W, Pisano F, Heroven AK, Dersch P (2017)
Proceedings of the National Academy of Sciences 114(5): E791-E800.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953300
Transcriptomic and Phenotypic Analysis Reveals New Functions for the Tat Pathway in Yersinia pseudotuberculosis
Avican U, Beckstette M, Heroven AK, Lavander M, Dersch P, Forsberg Å (2016)
Journal of Bacteriology 198(20): 2876-2886.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953301
Foxp3+ T cells expressing RORγt represent a stable regulatory T-cell effector lineage with enhanced suppressive capacity during intestinal inflammation
Yang B-H, Hagemann S, Mamareli P, Lauer U, Hoffmann U, Beckstette M, Föhse L, Prinz I, Pezoldt J, Suerbaum S, Sparwasser T, et al. (2016)
Mucosal Immunology 9(2): 444-457.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100
Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs
Nuss AM, Heroven AK, Waldmann B, Reinkensmeier J, Jarek M, Beckstette M, Dersch P (2015)
PLOS GENETICS 11(3): e1005087.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953303
Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis
Avican K, Fahlgren A, Huss M, Heroven AK, Beckstette M, Dersch P, Fällman M (2015)
PLOS Pathogens 11(1): e1004600.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953304
An AP4B1 frameshift mutation in siblings with intellectual disability and spastic tetraplegia further delineates the AP-4 deficiency syndrome
Abdollahpour H, Alawi M, Kortüm F, Beckstette M, Seemanova E, Komárek V, Rosenberger G, Kutsche K (2015)
European Journal of Human Genetics 23(2): 256-259.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953305
Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns
Meyer F, Kurtz S, Beckstette M (2013)
BMC Bioinformatics 14(1): 226.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953309
Structator: fast index-based search for RNA sequence-structure patterns
Meyer F, Kurtz S, Backofen R, Will S, Beckstette M (2011)
BMC Bioinformatics 12(1): 214.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
Significant speedup of database searches with HMMs by search space reduction with PSSM family models
Beckstette M, Homann R, Giegerich R, Kurtz S (2009)
Bioinformatics 25(24): 3251-3258.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953311
Lightweight comparison of RNAs based on exact sequence–structure matches
Heyne S, Will S, Beckstette M, Backofen R (2009)
Bioinformatics 25(16): 2095-2102.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864 OA
Fast index based algorithms and software for matching position specific scoring matrices
Beckstette M, Homann R, Giegerich R, Kurtz S (2006)
BMC Bioinformatics 7(1): 389.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[4]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613 OA
XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
Sczyrba A, Beckstette M, Brivanlou AH, Giegerich R, Altmann CR (2005)
BMC Genomics 6(1): 123.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[3]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529
Genlight: Interactive high-throughput sequence analysis and comparative genomics
Beckstette M, Mailänder JT, Marhöfer RJ, Sczyrba A, Ohlebusch E, Giegerich R, Selzer PM (2004)
Journal of Integrative Bioinformatics 1(1): 90-107.
PUB | DOI
 
[2]
2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383536
Genlight: Interactive high-throughput sequence analysis and comparative genomics
Beckstette M, Sczyrba A, Selzer PM (2004)
In: German Conference on Bioinformatics. GCB 2004 ; October 4 - 6, 2004, Bielefeld, Germany . Giegerich R (Ed); GI-Edition / Proceedings, 53. Bonn: Gesellschaft für Informatik: 179-186.
PUB
 
[1]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953316
The Maize Single myb histone 1 Gene, Smh1, Belongs to a Novel Gene Family and Encodes a Protein That Binds Telomere DNA Repeats in Vitro
Marian CO, Bordoli SJ, Goltz M, Santarella RA, Jackson LP, Danilevskaya O, Beckstette M, Meeley R, Bass HW (2003)
Plant Physiology 133(3): 1336-1350.
PUB | DOI | WoS | PubMed | Europe PMC
 

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