41 Publikationen
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2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988204Diem E, Lu C, Beckstette M, Floess S, Lochner M. Epigenetic profiling of murine innate lymphoid cells under homeostatic and acute/memory-like inflammatory conditions. In: Joint Conference of the Société Française d'Immunologie (SFI) and the Deutsche Gesellschaft für Immunologie (DGfI), 26–29 September, 2023, Strasbourg, France. European Journal of Immunology. Vol 53. Hoboken: Wiley; 2023: 238.PUB | WoS
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2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983209Hassa J, Tubbesing TJ, Maus I, et al. Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics. Microorganisms. 2023;11(10): 2412.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2978079Boldt J, Lukoseviciute L, Fu C, et al. Bursts in biosynthetic gene cluster transcription are accompanied by surges of natural compound production in the myxobacterium Sorangium sp. Microbial Biotechnology . 2023.PUB | PDF | DOI | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967522Pezoldt J, Wiechers C, Zou M, et al. Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34(+) stromal cell subsets. Nature Communications. 2022;13(1): 7227.PUB | DOI | WoS | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965101Beckstette M, Lu C-W, Herppich S, et al. Profiling of epigenetic marker regions in murine ILCs under homeostatic and inflammatory conditions. Journal of Experimental Medicine. 2022;219(10): e20210663.PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501Brandt D, Simunovic M, Busche T, et al. Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines. Viruses. 2021;13(9): 1870.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645Maus I, Klocke M, Derenkó J, et al. Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics. Environmental Microbiome. 2020;15(1): 7.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267Schulte-Schrepping J, Reusch N, Paclik D, et al. Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment. Cell. 2020;182(6):1419-1440.e23.PUB | DOI | WoS | PubMed | Europe PMC
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2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2953279Ciurkiewicz M, Floess S, Beckstette M, et al. Transkriptomanalysen in der Frühphase der Theilervirusinfektion zeigen Unterschiede in der angeborenen Immunantwort und Antigenpräsentation bei SJL- und C57BL/6-Mäusen. In: 63. Jahrestagung der Fachgruppe Pathologie der Deutschen Veterinärmedizinischen Gesellschaft. Tierärztliche Praxis Ausgabe K: Kleintiere / Heimtiere. Vol 48. Stuttgart: Georg Thieme Verlag; 2020: 220.PUB | DOI
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953282Pezoldt J, Erhard F, Beckstette M, et al. Innate Antiviral Specialization of Ly6C+CD45+ Splenic Red Pulp Stroma Instilled by Subset-Specific Regulation of Cellular Sensitivity to Type I Interferons. SSRN Electronic Journal. 2020.PUB | DOI
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953283Ciurkiewicz M, Floess S, Beckstette M, et al. Early Transcriptional Differences in the Brain of Theiler’s Virus-infected Mouse Strains Reveal Delayed Antiviral Immune Responses in SJL/J mice. Journal of Comparative Pathology. 2020;174: 178.PUB | DOI
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953286Schmühl C, Beckstette M, Heroven AK, et al. Comparative Transcriptomic Profiling of O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation. mSystems. 2019;4(2).PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953287Berndt V, Beckstette M, Volk M, Dersch P, Brönstrup M. Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli. Scientific Reports. 2019;9(1): 138.PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2953285Kusmierek M, Heroven AK, Beckstette M, Nuss AM, Dersch P. Discovering Yersinia–Host Interactions by Tissue Dual RNA-Seq. In: Vadyvaloo V, Lawrenz MB, eds. Pathogenic Yersinia. Methods and Protocols. Methods in Molecular Biology. Vol 2010. New York, NY: Springer ; 2019: 99-116.PUB | DOI
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953288Berges M, Michel A-M, Lassek C, et al. Iron Regulation in Clostridioides difficile. Frontiers in Microbiology. 2018;9: 3183.PUB | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953289Pezoldt J, Pasztoi M, Zou M, et al. Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes. Nature Communications. 2018;9(1): 3903.PUB | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953291Neumann-Schaal M, Metzendorf NG, Troitzsch D, et al. Tracking gene expression and oxidative damage of O2-stressed Clostridioides difficile by a multi-omics approach. Anaerobe. 2018;53:94-107.PUB | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953292Uhde A-K, Ciurkiewicz M, Herder V, et al. Intact interleukin-10 receptor signaling protects from hippocampal damage elicited by experimental neurotropic virus infection of SJL mice. Scientific Reports. 2018;8(1): 6106.PUB | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953293Heine W, Beckstette M, Heroven AK, et al. Loss of CNFY toxin-induced inflammation drives Yersinia pseudotuberculosis into persistency. PLOS Pathogens. 2018;14(2): e1006858.PUB | DOI | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367Sczyrba A, Hofmann P, Belmann P, et al. Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods. 2017;14(11):1063-1071.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953296Pasztoi M, Pezoldt J, Beckstette M, et al. Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3 regulatory T cells. European Journal of Immunology. 2017;47(12):2142-2152.PUB | DOI | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953297Nikolouli E, Hardtke-Wolenski M, Hapke M, et al. Alloantigen-Induced Regulatory T Cells Generated in Presence of Vitamin C Display Enhanced Stability of Foxp3 Expression and Promote Skin Allograft Acceptance. Frontiers in Immunology. 2017;8: 748.PUB | DOI | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953298Garg G, Nikolouli E, Hardtke-Wolenski M, et al. Unique properties of thymic antigen-presenting cells promote epigenetic imprinting of alloantigen-specific regulatory T cells. Oncotarget. 2017;8(22):35542-35557.PUB | DOI | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953299Nuss AM, Beckstette M, Pimenova M, et al. Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host–pathogen transcriptomes. Proceedings of the National Academy of Sciences. 2017;114(5):E791-E800.PUB | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953300Avican U, Beckstette M, Heroven AK, Lavander M, Dersch P, Forsberg Å. Transcriptomic and Phenotypic Analysis Reveals New Functions for the Tat Pathway in Yersinia pseudotuberculosis. Journal of Bacteriology. 2016;198(20):2876-2886.PUB | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953301Yang B-H, Hagemann S, Mamareli P, et al. Foxp3+ T cells expressing RORγt represent a stable regulatory T-cell effector lineage with enhanced suppressive capacity during intestinal inflammation. Mucosal Immunology. 2016;9(2):444-457.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917100Nuss AM, Heroven AK, Waldmann B, et al. Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs. PLOS GENETICS. 2015;11(3): e1005087.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953303Avican K, Fahlgren A, Huss M, et al. Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis. PLOS Pathogens. 2015;11(1): e1004600.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953304Abdollahpour H, Alawi M, Kortüm F, et al. An AP4B1 frameshift mutation in siblings with intellectual disability and spastic tetraplegia further delineates the AP-4 deficiency syndrome. European Journal of Human Genetics. 2015;23(2):256-259.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953305Meyer F, Kurtz S, Beckstette M. Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns. BMC Bioinformatics. 2013;14(1): 226.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953309Meyer F, Kurtz S, Backofen R, Will S, Beckstette M. Structator: fast index-based search for RNA sequence-structure patterns. BMC Bioinformatics. 2011;12(1): 214.PUB | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458Beckstette M, Homann R, Giegerich R, Kurtz S. Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics. 2009;25(24):3251-3258.PUB | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953311Heyne S, Will S, Beckstette M, Backofen R. Lightweight comparison of RNAs based on exact sequence–structure matches. Bioinformatics. 2009;25(16):2095-2102.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383536Beckstette M, Sczyrba A, Selzer PM. Genlight: Interactive high-throughput sequence analysis and comparative genomics. In: Giegerich R, ed. German Conference on Bioinformatics. GCB 2004 ; October 4 - 6, 2004, Bielefeld, Germany . GI-Edition / Proceedings. Vol 53. Bonn: Gesellschaft für Informatik; 2004: 179-186.PUB
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953316Marian CO, Bordoli SJ, Goltz M, et al. The Maize Single myb histone 1 Gene, Smh1, Belongs to a Novel Gene Family and Encodes a Protein That Binds Telomere DNA Repeats in Vitro. Plant Physiology. 2003;133(3):1336-1350.PUB | DOI | WoS | PubMed | Europe PMC