PUB - Publikationen an der Universität Bielefeld

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• [25]
  

  2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2988343

  Maraci, Öncü, Antonatou-Papaioannou, Anna, Jünemann, Sebastian, Schneeberger, Karin, Schulze, Michael, Scheffler, Ingo, and Caspers, Barbara. “Bats, Bacteria, and Bat Smell V.2.0: Repeatable Sex-Specific Differences in Scent Organ Microbiota”. Microbial Ecology 87.1 (2024): 55.

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• [24]
  

  2023 | Bielefelder E-Dissertation | PUB-ID: 2968940

  Jünemann, Sebastian. Quality is a Myth - Assessing and Addressing Errors in Sequencing Data. Bielefeld: Universität Bielefeld, 2023.

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• [23]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963726

  Maraci, Öncü, Antonatou-Papaioannou, Anna, Jünemann, Sebastian, Engel, Kathrin, Castillo-Gutiérrez, Omar, Busche, Tobias, Kalinowski, Jörn, and Caspers, Barbara. “Timing matters: Age-dependent impacts of the social environment and host selection on the avian gut microbiota”. Microbiome 10.1 (2022): 202.

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• [22]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2962824

  Maraci, Öncü, Corsini, Michela, Antonatou-Papaioannou, Anna, Jünemann, Sebastian, Sudyka, Joanna, Di Lecce, Irene, Caspers, Barbara, and Szulkin, Marta. “Changes to the gut microbiota of a wild juvenile passerine in a multidimensional urban mosaic”. Scientific Reports 12.1 (2022): 6872.

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• [21]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501

  Brandt, David, Simunovic, Marina, Busche, Tobias, Haak, Markus, Belmann, Peter, Jünemann, Sebastian, Schulz, Tizian, Klages, Levin Joe, Vinke, Svenja, Beckstette, Michael, Pohl, Ehmke, Scherer, Christiane, Sczyrba, Alexander, and Kalinowski, Jörn. “Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines”. Viruses 13.9 (2021): 1870.

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• [20]
  

  2021 | Preprint | Veröffentlicht | PUB-ID: 2955069

  Maraci, Öncü, Corsini, Michela, Antonatou-Papaioannou, Anna, Jünemann, Sebastian, Sudyka, Joanna, Lecce, Irene Di, Caspers, Barbara, and Szulkin, Marta. “Alterations to the Gut Microbiota of a Wild Juvenile Passerine in an Urban Mosaic”. bioRxiv (2021).

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• [19]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951630

  Maraci, Öncü, Antonatou-Papaioannou, Anna, Jünemann, Sebastian, Castillo, Omar, Busche, Tobias, Kalinowski, Jörn, and Caspers, Barbara. “The Gut Microbial Composition Is Species-Specific and Individual-Specific in Two Species of Estrildid Finches, the Bengalese Finch and the Zebra Finch”. Frontiers in Microbiology 12 (2021): 619141.

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• [18]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949051

  Engel, Kathrin, Pankoke, Helga, Jünemann, Sebastian, Brandl, Hanja B., Sauer, Jan, Griffith, Simon, Kalinowski, Jörn, and Caspers, Barbara. “Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finches”. BMC Ecology 20.1 (2020): 58.

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• [17]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944226

  Rettenmaier, Regina, Schneider, Martina, Munk, Bernhard, Lebuhn, Michael, Jünemann, Sebastian, Sczyrba, Alexander, Maus, Irena, Zverlov, Vladimir, and Liebl, Wolfgang. “Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum”. Microorganisms 8.6 (2020): 915.

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• [16]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346

  Hagenfeld, Daniel, Koch, Raphael, Jünemann, Sebastian, Prior, Karola, Harks, Inga, Eickholz, Peter, Hoffmann, Thomas, Kim, Ti-Sun, Kocher, Thomas, Meyle, Jörg, Kaner, Doğan, Schlagenhauf, Ulrich, Ehmke, Benjamin, and Harmsen, Dag. “Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis”. PLOS ONE 13.4 (2018): e0195534.

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• [15]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925

  Engel, Kathrin, Sauer, Jan, Jünemann, Sebastian, Winkler, Anika, Wibberg, Daniel, Kalinowski, Jörn, Tauch, Andreas, and Caspers, Barbara. “Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing”. Microbial Ecology 76.2 (2018): 518-529.

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• [14]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556

  Jünemann, Sebastian, Kleinbölting, Nils, Jaenicke, Sebastian, Henke, Christian, Hassa, Julia, Nelkner, Johanna, Stolze, Yvonne, Albaum, Stefan, Schlüter, Andreas, Goesmann, Alexander, Sczyrba, Alexander, and Stoye, Jens. “Bioinformatics for NGS-based metagenomics and the application to biogas research”. Journal of Biotechnology 261.SI (2017): 10-23.

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• [13]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773

  Jünemann, Sebastian, Prior, Karola, Albersmeier, Andreas, Albaum, Stefan, Kalinowski, Jörn, Goesmann, Alexander, Stoye, Jens, and Harmsen, Dag. “GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers”. PLOS ONE 9.9 (2014): e107014.

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• [12]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309

  Bolzan de Campos, Samanta, Youn, Jung-Won, Farina, Roberto, Jaenicke, Sebastian, Jünemann, Sebastian, Szczepanowski, Rafael, Beneduzi, Anelise, Vargas, Luciano K., Goesmann, Alexander, Wendisch, Volker F., and Passagilia, Luciane. “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing”. Microbial Ecology 65.3 (2013): 593-601.

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• [11]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228

  Jünemann, Sebastian, Sedlazeck, Fritz Joachim, Prior, Karola, Albersmeier, Andreas, John, Uwe, Kalinowski, Jörn, Mellmann, Alexander, Goesmann, Alexander, von Haeseler, Arndt, Stoye, Jens, and Harmsen, Dag. “Corrigendum: Updating benchtop sequencing performance comparison”. Nature biotechnology 31.12 (2013): 1148.

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• [10]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922

  Jünemann, Sebastian, Sedlazeck, Fritz Joachim, Prior, Karola, Albersmeier, Andreas, John, Uwe, Kalinowski, Jörn, Mellmann, Alexander, Goesmann, Alexander, von Haeseler, Arndt, Stoye, Jens, and Harmsen, Dag. “Updating benchtop sequencing performance comparison”. Nature Biotechnology 31.4 (2013): 294-296.

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• [9]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614207

  Eikmeyer, Felix Gregor, Köfinger, Petra, Poschenel, Andrea, Jünemann, Sebastian, Zakrzewski, Martha, Heinl, Stefan, Mayrhuber, Elisabeth, Grabherr, Reingard, Pühler, Alfred, Schwab, Helmut, and Schlüter, Andreas. “Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging”. Journal of Biotechnology 167.3 (2013): 334-343.

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• [8]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230

  Jünemann, Sebastian, Prior, Karola, Szczepanowski, Rafael, Harks, Inga, Ehmke, Benjamin, Goesmann, Alexander, Stoye, Jens, and Harmsen, Dag. “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”. PLoS ONE 7.8 (2012): e41606.

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• [7]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618

  Zakrzewski, Martha, Goesmann, Alexander, Jaenicke, Sebastian, Jünemann, Sebastian, Eikmeyer, Felix Gregor, Szczepanowski, Rafael, Al-Soud, Waleed Abu, Sørensen, Søren, Pühler, Alfred, and Schlüter, Andreas. “Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing”. Journal of Biotechnology 158.4 (2012): 248-258.

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• [6]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933

  Dohrmann, Anja B, Küting, Meike, Jünemann, Sebastian, Jaenicke, Sebastian, Schlüter, Andreas, and Tebbe, Christoph C. “Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties”. The ISME journal 7.1 (2012): 37-49.

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• [5]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286

  Vogel, Ulrich, Szczepanowski, Rafael, Claus, Heike, Jünemann, Sebastian, Prior, Karola, and Harmsen, Dag. “Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information”. Journal of clinical microbiology 50.6 (2012): 1889-1894.

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• [4]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276

  Jaenicke, Sebastian, Ander, Christina, Bekel, Thomas, Bisdorf, Regina, Dröge, Marcus, Gartemann, Karl-Heinz, Jünemann, Sebastian, Kaiser, Olaf, Krause, Lutz, Tille, Felix, Zakrzewski, Martha, Pühler, Alfred, Schlüter, Andreas, and Goesmann, Alexander. “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”. PLoS ONE 6.1 (2011): e14519.

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• [3]
  

  2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751

  Jaenicke, Sebastian, Zakrzewski, Martha, Jünemann, Sebastian, Pühler, Alfred, Goesmann, Alexander, and Schlüter, Andreas. “Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods”. Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats. Ed. Frans J. de Bruijn. Hoboken, NJ, USA: Wiley-Blackwell, 2011. 403-414.

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• [2]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321

  Dondrup, Michael, Albaum, Stefan, Griebel, Thasso, Henckel, Kolja, Jünemann, Sebastian, Kahlke, Tim, Kleindt, Christiane Katja, Kuester, Helge, Linke, Burkhard, Mertens, Dominik, Mittard-Runte, Virginie, Neuweger, Heiko, Runte, Kai J., Tauch, Andreas, Tille, Felix, Pühler, Alfred, and Goesmann, Alexander. “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”. BMC Bioinformatics 10.1 (2009): 50.

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• [1]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098

  Gerlach, Wolfgang, Jünemann, Sebastian, Tille, Felix, Goesmann, Alexander, and Stoye, Jens. “WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads”. BMC Bioinformatics 10.1 (2009): 430.

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