PUB - Publikationen an der Universität Bielefeld

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• [25]
  

  2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2988343

  Maraci, Ö., Antonatou-Papaioannou, A., Jünemann, S., Schneeberger, K., Schulze, M., Scheffler, I., Caspers, B.: Bats, Bacteria, and Bat Smell V.2.0: Repeatable Sex-Specific Differences in Scent Organ Microbiota. Microbial Ecology . 87, : 55 (2024).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [24]
  

  2023 | Bielefelder E-Dissertation | PUB-ID: 2968940

  Jünemann, S.: Quality is a Myth - Assessing and Addressing Errors in Sequencing Data. Universität Bielefeld, Bielefeld (2023).

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• [23]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963726

  Maraci, Ö., Antonatou-Papaioannou, A., Jünemann, S., Engel, K., Castillo-Gutiérrez, O., Busche, T., Kalinowski, J., Caspers, B.: Timing matters: Age-dependent impacts of the social environment and host selection on the avian gut microbiota. Microbiome. 10, 202 (2022).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
   
• [22]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2962824

  Maraci, Ö., Corsini, M., Antonatou-Papaioannou, A., Jünemann, S., Sudyka, J., Di Lecce, I., Caspers, B., Szulkin, M.: Changes to the gut microbiota of a wild juvenile passerine in a multidimensional urban mosaic. Scientific Reports. 12, : 6872 (2022).

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• [21]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501

  Brandt, D., Simunovic, M., Busche, T., Haak, M., Belmann, P., Jünemann, S., Schulz, T., Klages, L.J., Vinke, S., Beckstette, M., Pohl, E., Scherer, C., Sczyrba, A., Kalinowski, J.: Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines. Viruses. 13, : 1870 (2021).

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• [20]
  

  2021 | Preprint | Veröffentlicht | PUB-ID: 2955069

  Maraci, Ö., Corsini, M., Antonatou-Papaioannou, A., Jünemann, S., Sudyka, J., Lecce, I.D., Caspers, B., Szulkin, M.: Alterations to the Gut Microbiota of a Wild Juvenile Passerine in an Urban Mosaic. bioRxiv. (2021).

  PUB | DOI | Preprint
   
• [19]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951630

  Maraci, Ö., Antonatou-Papaioannou, A., Jünemann, S., Castillo, O., Busche, T., Kalinowski, J., Caspers, B.: The Gut Microbial Composition Is Species-Specific and Individual-Specific in Two Species of Estrildid Finches, the Bengalese Finch and the Zebra Finch. Frontiers in Microbiology. 12, : 619141 (2021).

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• [18]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949051

  Engel, K., Pankoke, H., Jünemann, S., Brandl, H.B., Sauer, J., Griffith, S., Kalinowski, J., Caspers, B.: Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finches. BMC Ecology. 20, : 58 (2020).

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• [17]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944226

  Rettenmaier, R., Schneider, M., Munk, B., Lebuhn, M., Jünemann, S., Sczyrba, A., Maus, I., Zverlov, V., Liebl, W.: Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum. Microorganisms. 8, : 915 (2020).

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• [16]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346

  Hagenfeld, D., Koch, R., Jünemann, S., Prior, K., Harks, I., Eickholz, P., Hoffmann, T., Kim, T.-S., Kocher, T., Meyle, J., Kaner, D., Schlagenhauf, U., Ehmke, B., Harmsen, D.: Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE. 13, : e0195534 (2018).

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• [15]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925

  Engel, K., Sauer, J., Jünemann, S., Winkler, A., Wibberg, D., Kalinowski, J., Tauch, A., Caspers, B.: Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing. Microbial Ecology. 76, 518-529 (2018).

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• [14]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556

  Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., Albaum, S., Schlüter, A., Goesmann, A., Sczyrba, A., Stoye, J.: Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology. 261, 10-23 (2017).

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• [13]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773

  Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J., Harmsen, D.: GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE. 9, : e107014 (2014).

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• [12]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309

  Bolzan de Campos, S., Youn, J.-W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., Vargas, L.K., Goesmann, A., Wendisch, V.F., Passagilia, L.: Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology. 65, 593-601 (2013).

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• [11]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228

  Jünemann, S., Sedlazeck, F.J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., Harmsen, D.: Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology. 31, 1148 (2013).

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• [10]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922

  Jünemann, S., Sedlazeck, F.J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., Harmsen, D.: Updating benchtop sequencing performance comparison. Nature Biotechnology. 31, 294-296 (2013).

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• [9]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614207

  Eikmeyer, F.G., Köfinger, P., Poschenel, A., Jünemann, S., Zakrzewski, M., Heinl, S., Mayrhuber, E., Grabherr, R., Pühler, A., Schwab, H., Schlüter, A.: Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging. Journal of Biotechnology. 167, 334-343 (2013).

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• [8]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230

  Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J., Harmsen, D.: Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE. 7, : e41606 (2012).

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• [7]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618

  Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F.G., Szczepanowski, R., Al-Soud, W.A., Sørensen, S., Pühler, A., Schlüter, A.: Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology. 158, 248-258 (2012).

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• [6]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933

  Dohrmann, A.B., Küting, M., Jünemann, S., Jaenicke, S., Schlüter, A., Tebbe, C.C.: Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties. The ISME journal. 7, 37-49 (2012).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286

  Vogel, U., Szczepanowski, R., Claus, H., Jünemann, S., Prior, K., Harmsen, D.: Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information. Journal of clinical microbiology. 50, 1889-1894 (2012).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276

  Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K.-H., Jünemann, S., Kaiser, O., Krause, L., Tille, F., Zakrzewski, M., Pühler, A., Schlüter, A., Goesmann, A.: Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE. 6, : e14519 (2011).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751

  Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A., Schlüter, A.: Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. In: de Bruijn, F.J. (ed.) Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats. p. 403-414. Wiley-Blackwell, Hoboken, NJ, USA (2011).

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• [2]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321

  Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C.K., Kuester, H., Linke, B., Mertens, D., Mittard-Runte, V., Neuweger, H., Runte, K.J., Tauch, A., Tille, F., Pühler, A., Goesmann, A.: EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics. 10, : 50 (2009).

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• [1]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098

  Gerlach, W., Jünemann, S., Tille, F., Goesmann, A., Stoye, J.: WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics. 10, 430 (2009).

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