16 Publikationen

Alle markieren

[16]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346
Hagenfeld, D., Koch, R., Jünemann, S., Prior, K., Harks, I., Eickholz, P., Hoffmann, T., Kim, T.-S., Kocher, T., Meyle, J., Kaner, D., Schlagenhauf, U., Ehmke, B. & Harmsen, D. (2018). Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE, 13(4): e0195534. Public Library of Science (PLoS). doi:10.1371/journal.pone.0195534.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
Engel, K., Sauer, J., Jünemann, S., Winkler, A., Wibberg, D., Kalinowski, J., Tauch, A. & Caspers, B. (2018). Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing. Microbial Ecology, 76(2), 518-529. Springer Nature. doi:10.1007/s00248-017-1130-8.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556 OA
Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., Albaum, S., Schlüter, A., Goesmann, A., Sczyrba, A. & Stoye, J. (2017). Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology, 261(SI), 10-23. Elsevier BV. doi:10.1016/j.jbiotec.2017.08.012.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[13]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J. & Harmsen, D. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE, 9(9), e107014. Public Library of Science (PLoS). doi:10.1371/journal.pone.0107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann, S., Sedlazeck, F.J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J. & Harmsen, D. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology, 31(12), 1148. Nature Publishing Group. doi:10.1038/nbt1213-1148e.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, S., Sedlazeck, F.J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J. & Harmsen, D. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology, 31(4), 294-296. Nature Publishing Group. doi:10.1038/nbt.2522.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614207
Eikmeyer, F.G., Köfinger, P., Poschenel, A., Jünemann, S., Zakrzewski, M., Heinl, S., Mayrhuber, E., Grabherr, R., Pühler, A., Schwab, H. & Schlüter, A. (2013). Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging. Journal of Biotechnology, 167(3), 334-343. Elsevier BV. doi:10.1016/j.jbiotec.2013.07.021.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
Bolzan de Campos, S., Youn, J.-W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., Vargas, L.K., Wendisch, V.F. & Passaglia, L. (2013). Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology, 65(3), 593-601. Springer Science + Business Media. doi:10.1007/s00248-012-0132-9.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F.G., Szczepanowski, R., Al-Soud, W.A., Sørensen, S., Pühler, A. & Schlüter, A. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology, 158(4), 248-258. Elsevier BV. doi:10.1016/j.jbiotec.2012.01.020.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
Dohrmann, A.B., Küting, M., Jünemann, S., Jaenicke, S., Schlüter, A. & Tebbe, C.C. (2012). Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties. The ISME journal, 7(1), 37-49. Nature Publishing Group. doi:10.1038/ismej.2012.77.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J. & Harmsen, D. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE, 7(8), e41606. Public Library of Science (PLoS). doi:10.1371/journal.pone.0041606.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
Vogel, U., Szczepanowski, R., Claus, H., Jünemann, S., Prior, K. & Harmsen, D. (2012). Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information. Journal of clinical microbiology, 50(6), 1889-1894. American Society for Microbiology. doi:10.1128/JCM.00038-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A. & Schlüter, A. (2011). Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. In F.J. de Bruijn (Hrsg.), Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (S. 403-414). Wiley-Blackwell. doi:10.1002/9781118010549.ch39.
PUB | DOI
 
[3]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K.-H., Jünemann, S., Kaiser, O., Krause, L., Tille, F., Zakrzewski, M., Pühler, A., Schlüter, A. & Goesmann, A. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE, 6(1), e14519. Public Library of Science (PLoS). doi:10.1371/journal.pone.0014519.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C.K., Kuester, H., Linke, B., Mertens, D., Mittard-Runte, V., Neuweger, H., Runte, K.J., Tauch, A., Tille, F., Pühler, A. & Goesmann, A. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics, 10(1): 50. Springer Science + Business Media. doi:10.1186/1471-2105-10-50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[1]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
Gerlach, W., Jünemann, S., Tille, F., Goesmann, A. & Stoye, J. (2009). WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics, 10(1), 430. Springer Science + Business Media. doi:10.1186/1471-2105-10-430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 

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16 Publikationen

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[16]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346
Hagenfeld, D., Koch, R., Jünemann, S., Prior, K., Harks, I., Eickholz, P., Hoffmann, T., Kim, T.-S., Kocher, T., Meyle, J., Kaner, D., Schlagenhauf, U., Ehmke, B. & Harmsen, D. (2018). Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE, 13(4): e0195534. Public Library of Science (PLoS). doi:10.1371/journal.pone.0195534.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
Engel, K., Sauer, J., Jünemann, S., Winkler, A., Wibberg, D., Kalinowski, J., Tauch, A. & Caspers, B. (2018). Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing. Microbial Ecology, 76(2), 518-529. Springer Nature. doi:10.1007/s00248-017-1130-8.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556 OA
Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., Albaum, S., Schlüter, A., Goesmann, A., Sczyrba, A. & Stoye, J. (2017). Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology, 261(SI), 10-23. Elsevier BV. doi:10.1016/j.jbiotec.2017.08.012.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[13]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J. & Harmsen, D. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE, 9(9), e107014. Public Library of Science (PLoS). doi:10.1371/journal.pone.0107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann, S., Sedlazeck, F.J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J. & Harmsen, D. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology, 31(12), 1148. Nature Publishing Group. doi:10.1038/nbt1213-1148e.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, S., Sedlazeck, F.J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J. & Harmsen, D. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology, 31(4), 294-296. Nature Publishing Group. doi:10.1038/nbt.2522.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614207
Eikmeyer, F.G., Köfinger, P., Poschenel, A., Jünemann, S., Zakrzewski, M., Heinl, S., Mayrhuber, E., Grabherr, R., Pühler, A., Schwab, H. & Schlüter, A. (2013). Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging. Journal of Biotechnology, 167(3), 334-343. Elsevier BV. doi:10.1016/j.jbiotec.2013.07.021.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
Bolzan de Campos, S., Youn, J.-W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., Vargas, L.K., Wendisch, V.F. & Passaglia, L. (2013). Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology, 65(3), 593-601. Springer Science + Business Media. doi:10.1007/s00248-012-0132-9.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F.G., Szczepanowski, R., Al-Soud, W.A., Sørensen, S., Pühler, A. & Schlüter, A. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology, 158(4), 248-258. Elsevier BV. doi:10.1016/j.jbiotec.2012.01.020.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
Dohrmann, A.B., Küting, M., Jünemann, S., Jaenicke, S., Schlüter, A. & Tebbe, C.C. (2012). Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties. The ISME journal, 7(1), 37-49. Nature Publishing Group. doi:10.1038/ismej.2012.77.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J. & Harmsen, D. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE, 7(8), e41606. Public Library of Science (PLoS). doi:10.1371/journal.pone.0041606.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
Vogel, U., Szczepanowski, R., Claus, H., Jünemann, S., Prior, K. & Harmsen, D. (2012). Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information. Journal of clinical microbiology, 50(6), 1889-1894. American Society for Microbiology. doi:10.1128/JCM.00038-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A. & Schlüter, A. (2011). Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. In F.J. de Bruijn (Hrsg.), Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (S. 403-414). Wiley-Blackwell. doi:10.1002/9781118010549.ch39.
PUB | DOI
 
[3]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K.-H., Jünemann, S., Kaiser, O., Krause, L., Tille, F., Zakrzewski, M., Pühler, A., Schlüter, A. & Goesmann, A. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE, 6(1), e14519. Public Library of Science (PLoS). doi:10.1371/journal.pone.0014519.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C.K., Kuester, H., Linke, B., Mertens, D., Mittard-Runte, V., Neuweger, H., Runte, K.J., Tauch, A., Tille, F., Pühler, A. & Goesmann, A. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics, 10(1): 50. Springer Science + Business Media. doi:10.1186/1471-2105-10-50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[1]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
Gerlach, W., Jünemann, S., Tille, F., Goesmann, A. & Stoye, J. (2009). WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics, 10(1), 430. Springer Science + Business Media. doi:10.1186/1471-2105-10-430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 

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Zitationsstil: dgps

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