PUB - Publikationen an der Universität Bielefeld

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• [25]
  

  2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2988343

  Maraci, Ö., Antonatou-Papaioannou, A., Jünemann, S., Schneeberger, K., Schulze, M., Scheffler, I. & Caspers, B. (2024). Bats, Bacteria, and Bat Smell V.2.0: Repeatable Sex-Specific Differences in Scent Organ Microbiota. Microbial Ecology , 87(1): 55. Springer. doi:10.1007/s00248-024-02368-1.

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• [24]
  

  2023 | Bielefelder E-Dissertation | PUB-ID: 2968940

  Jünemann, S. (2023). Quality is a Myth - Assessing and Addressing Errors in Sequencing Data. Bielefeld: Universität Bielefeld. doi:10.4119/unibi/2968940.

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• [23]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963726

  Maraci, Ö., Antonatou-Papaioannou, A., Jünemann, S., Engel, K., Castillo-Gutiérrez, O., Busche, T., Kalinowski, J. & Caspers, B. (2022). Timing matters: Age-dependent impacts of the social environment and host selection on the avian gut microbiota. Microbiome, 10(1), 202. Springer Science and Business Media LLC. doi:10.1186/s40168-022-01401-0.

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• [22]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2962824

  Maraci, Ö., Corsini, M., Antonatou-Papaioannou, A., Jünemann, S., Sudyka, J., Di Lecce, I., Caspers, B. & Szulkin, M. (2022). Changes to the gut microbiota of a wild juvenile passerine in a multidimensional urban mosaic. Scientific Reports, 12(1): 6872. Springer Nature. doi:10.1038/s41598-022-10734-7.

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• [21]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501

  Brandt, D., Simunovic, M., Busche, T., Haak, M., Belmann, P., Jünemann, S., Schulz, T., Klages, L.J., Vinke, S., Beckstette, M., Pohl, E., Scherer, C., Sczyrba, A. & Kalinowski, J. (2021). Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines. Viruses, 13(9): 1870. doi:10.3390/v13091870.

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• [20]
  

  2021 | Preprint | Veröffentlicht | PUB-ID: 2955069

  Maraci, Ö., Corsini, M., Antonatou-Papaioannou, A., Jünemann, S., Sudyka, J., Lecce, I.D., Caspers, B. & Szulkin, M. (2021). Alterations to the Gut Microbiota of a Wild Juvenile Passerine in an Urban Mosaic. bioRxiv. Cold Spring Harbor Laboratory. doi:10.1101/2021.04.15.439940.

  PUB | DOI | Preprint
   
• [19]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951630

  Maraci, Ö., Antonatou-Papaioannou, A., Jünemann, S., Castillo, O., Busche, T., Kalinowski, J. & Caspers, B. (2021). The Gut Microbial Composition Is Species-Specific and Individual-Specific in Two Species of Estrildid Finches, the Bengalese Finch and the Zebra Finch. Frontiers in Microbiology, 12: 619141. Frontiers Media . doi:10.3389/fmicb.2021.619141.

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• [18]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949051

  Engel, K., Pankoke, H., Jünemann, S., Brandl, H.B., Sauer, J., Griffith, S., Kalinowski, J. & Caspers, B. (2020). Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finches. BMC Ecology, 20(1): 58. Springer Nature. doi:10.1186/s12898-020-00326-2.

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• [17]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944226

  Rettenmaier, R., Schneider, M., Munk, B., Lebuhn, M., Jünemann, S., Sczyrba, A., Maus, I., Zverlov, V. & Liebl, W. (2020). Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum. Microorganisms, 8(6): 915. MDPI AG. doi:10.3390/microorganisms8060915.

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• [16]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346

  Hagenfeld, D., Koch, R., Jünemann, S., Prior, K., Harks, I., Eickholz, P., Hoffmann, T., Kim, T.-S., Kocher, T., Meyle, J., Kaner, D., Schlagenhauf, U., Ehmke, B. & Harmsen, D. (2018). Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE, 13(4): e0195534. Public Library of Science (PLoS). doi:10.1371/journal.pone.0195534.

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• [15]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925

  Engel, K., Sauer, J., Jünemann, S., Winkler, A., Wibberg, D., Kalinowski, J., Tauch, A. & Caspers, B. (2018). Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing. Microbial Ecology, 76(2), 518-529. Springer Nature. doi:10.1007/s00248-017-1130-8.

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• [14]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556

  Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., Albaum, S., Schlüter, A., Goesmann, A., Sczyrba, A. & Stoye, J. (2017). Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology, 261(SI), 10-23. Elsevier BV. doi:10.1016/j.jbiotec.2017.08.012.

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• [13]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773

  Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J. & Harmsen, D. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE, 9(9): e107014. Public Library of Science (PLoS). doi:10.1371/journal.pone.0107014.

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• [12]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309

  Bolzan de Campos, S., Youn, J.-W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., Vargas, L.K., Goesmann, A., Wendisch, V.F. & Passagilia, L. (2013). Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology, 65(3), 593-601. Springer Science + Business Media. doi:10.1007/s00248-012-0132-9.

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• [11]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228

  Jünemann, S., Sedlazeck, F.J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J. & Harmsen, D. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology, 31(12), 1148. Nature Publishing Group. doi:10.1038/nbt1213-1148e.

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• [10]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922

  Jünemann, S., Sedlazeck, F.J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J. & Harmsen, D. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology, 31(4), 294-296. Nature Publishing Group. doi:10.1038/nbt.2522.

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• [9]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614207

  Eikmeyer, F.G., Köfinger, P., Poschenel, A., Jünemann, S., Zakrzewski, M., Heinl, S., Mayrhuber, E., Grabherr, R., Pühler, A., Schwab, H. & Schlüter, A. (2013). Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging. Journal of Biotechnology, 167(3), 334-343. Elsevier BV. doi:10.1016/j.jbiotec.2013.07.021.

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• [8]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230

  Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J. & Harmsen, D. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE, 7(8): e41606. Public Library of Science (PLoS). doi:10.1371/journal.pone.0041606.

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• [7]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618

  Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F.G., Szczepanowski, R., Al-Soud, W.A., Sørensen, S., Pühler, A. & Schlüter, A. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology, 158(4), 248-258. Elsevier BV. doi:10.1016/j.jbiotec.2012.01.020.

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• [6]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933

  Dohrmann, A.B., Küting, M., Jünemann, S., Jaenicke, S., Schlüter, A. & Tebbe, C.C. (2012). Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties. The ISME journal, 7(1), 37-49. Nature Publishing Group. doi:10.1038/ismej.2012.77.

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• [5]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286

  Vogel, U., Szczepanowski, R., Claus, H., Jünemann, S., Prior, K. & Harmsen, D. (2012). Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information. Journal of clinical microbiology, 50(6), 1889-1894. American Society for Microbiology. doi:10.1128/JCM.00038-12.

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• [4]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276

  Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K.-H., Jünemann, S., Kaiser, O., Krause, L., Tille, F., Zakrzewski, M., Pühler, A., Schlüter, A. & Goesmann, A. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE, 6(1): e14519. Public Library of Science (PLoS). doi:10.1371/journal.pone.0014519.

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• [3]
  

  2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751

  Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A. & Schlüter, A. (2011). Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. In F.J. de Bruijn (Hrsg.), Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (S. 403-414). Hoboken, NJ, USA: Wiley-Blackwell. doi:10.1002/9781118010549.ch39.

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• [2]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321

  Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C.K., Kuester, H., Linke, B., Mertens, D., Mittard-Runte, V., Neuweger, H., Runte, K.J., Tauch, A., Tille, F., Pühler, A. & Goesmann, A. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics, 10(1): 50. Springer Science + Business Media. doi:10.1186/1471-2105-10-50.

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• [1]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098

  Gerlach, W., Jünemann, S., Tille, F., Goesmann, A. & Stoye, J. (2009). WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics, 10(1), 430. Springer Science + Business Media. doi:10.1186/1471-2105-10-430.

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