Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis

Hagenfeld D, Koch R, Jünemann S, Prior K, Harks I, Eickholz P, Hoffmann T, Kim T-S, Kocher T, Meyle J, Kaner D, et al. (2018)
PLOS ONE 13(4): e0195534.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Hagenfeld, Daniel; Koch, Raphael; Jünemann, SebastianUniBi; Prior, Karola; Harks, Inga; Eickholz, Peter; Hoffmann, Thomas; Kim, Ti-Sun; Kocher, Thomas; Meyle, Jörg; Kaner, Doğan; Schlagenhauf, Ulrich
Alle
Einrichtung
Centrum für Biotechnologie
Technische Fakultät > AG Genominformatik
Erscheinungsjahr
2018
Zeitschriftentitel
PLOS ONE
Band
13
Ausgabe
4
Art.-Nr.
e0195534
Urheberrecht / Lizenzen
Creative Commons Namensnennung 4.0 International Public License (CC-BY 4.0)
ISSN
1932-6203
Page URI
https://pub.uni-bielefeld.de/record/2919346

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Hagenfeld D, Koch R, Jünemann S, et al. Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE. 2018;13(4): e0195534.
Hagenfeld, D., Koch, R., Jünemann, S., Prior, K., Harks, I., Eickholz, P., Hoffmann, T., et al. (2018). Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE, 13(4), e0195534. doi:10.1371/journal.pone.0195534
Hagenfeld, Daniel, Koch, Raphael, Jünemann, Sebastian, Prior, Karola, Harks, Inga, Eickholz, Peter, Hoffmann, Thomas, et al. 2018. “Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis”. PLOS ONE 13 (4): e0195534.
Hagenfeld, D., Koch, R., Jünemann, S., Prior, K., Harks, I., Eickholz, P., Hoffmann, T., Kim, T. - S., Kocher, T., Meyle, J., et al. (2018). Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE 13:e0195534.
Hagenfeld, D., et al., 2018. Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE, 13(4): e0195534.
D. Hagenfeld, et al., “Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis”, PLOS ONE, vol. 13, 2018, : e0195534.
Hagenfeld, D., Koch, R., Jünemann, S., Prior, K., Harks, I., Eickholz, P., Hoffmann, T., Kim, T.-S., Kocher, T., Meyle, J., Kaner, D., Schlagenhauf, U., Ehmke, B., Harmsen, D.: Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE. 13, : e0195534 (2018).
Hagenfeld, Daniel, Koch, Raphael, Jünemann, Sebastian, Prior, Karola, Harks, Inga, Eickholz, Peter, Hoffmann, Thomas, Kim, Ti-Sun, Kocher, Thomas, Meyle, Jörg, Kaner, Doğan, Schlagenhauf, Ulrich, Ehmke, Benjamin, and Harmsen, Dag. “Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis”. PLOS ONE 13.4 (2018): e0195534.

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47 References

Daten bereitgestellt von Europe PubMed Central.

The human oral microbiome.
Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, Lakshmanan A, Wade WG., J. Bacteriol. 192(19), 2010
PMID: 20656903
Dancing with the Stars: How Choreographed Bacterial Interactions Dictate Nososymbiocity and Give Rise to Keystone Pathogens, Accessory Pathogens, and Pathobionts.
Hajishengallis G, Lamont RJ., Trends Microbiol. 24(6), 2016
PMID: 26968354
A ninety-year history of periodontosis: the legacy of Professor Bernhard Gottlieb.
Fine DH, Cohen DW, Bimstein E, Bruckmann C., J. Periodontol. 86(1), 2015
PMID: 25152003
Microbial complexes in subgingival plaque.
Socransky SS, Haffajee AD, Cugini MA, Smith C, Kent RL Jr., J. Clin. Periodontol. 25(2), 1998
PMID: 9495612
Synergistic effects between amoxicillin, metronidazole, and the hydroxymetabolite of metronidazole against Actinobacillus actinomycetemcomitans.
Pavicic MJ, van Winkelhoff AJ, de Graaff J., Antimicrob. Agents Chemother. 35(5), 1991
PMID: 1854177
Effect of periodontal therapy on the subgingival microbiota over a 2-year monitoring period. I. Overall effect and kinetics of change.
Socransky SS, Haffajee AD, Teles R, Wennstrom JL, Lindhe J, Bogren A, Hasturk H, van Dyke T, Wang X, Goodson JM., J. Clin. Periodontol. 40(8), 2013
PMID: 23710672
Non-surgical periodontal therapy with systemic antibiotics in patients with untreated aggressive periodontitis: a systematic review and meta-analysis.
Keestra JA, Grosjean I, Coucke W, Quirynen M, Teughels W., J. Periodont. Res. 50(6), 2014
PMID: 25522248
Is progression of periodontitis relevantly influenced by systemic antibiotics? A clinical randomized trial.
Harks I, Koch R, Eickholz P, Hoffmann T, Kim TS, Kocher T, Meyle J, Kaner D, Schlagenhauf U, Doering S, Holtfreter B, Gravemeier M, Harmsen D, Ehmke B., J. Clin. Periodontol. 42(9), 2015
PMID: 26250060
Is furcation involvement affected by adjunctive systemic amoxicillin plus metronidazole? A clinical trials exploratory subanalysis.
Eickholz P, Nickles K, Koch R, Harks I, Hoffmann T, Kim TS, Kocher T, Meyle J, Kaner D, Schlagenhauf U, Doering S, Gravemeier M, Ehmke B., J. Clin. Periodontol. 43(10), 2016
PMID: 27393928
Microbial shift and periodontitis.
Berezow AB, Darveau RP., Periodontol. 2000 55(1), 2011
PMID: 21134227
Bacterial community shift in treated periodontitis patients revealed by ion torrent 16S rRNA gene amplicon sequencing.
Junemann S, Prior K, Szczepanowski R, Harks I, Ehmke B, Goesmann A, Stoye J, Harmsen D., PLoS ONE 7(8), 2012
PMID: 22870235
Updating benchtop sequencing performance comparison.
Junemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D., Nat. Biotechnol. 31(4), 2013
PMID: 23563421
Metagenomic analysis of subgingival microbiota following non-surgical periodontal therapy: a pilot study.
Laksmana T, Kittichotirat W, Huang Y, Chen W, Jorgensen M, Bumgarner R, Chen C., Open Dent J 6(), 2012
PMID: 23341849
The personal human oral microbiome obscures the effects of treatment on periodontal disease.
Schwarzberg K, Le R, Bharti B, Lindsay S, Casaburi G, Salvatore F, Saber MH, Alonaizan F, Slots J, Gottlieb RA, Caporaso JG, Kelley ST., PLoS ONE 9(1), 2014
PMID: 24489772
Microbial profiles at baseline and not the use of antibiotics determine the clinical outcome of the treatment of chronic periodontitis.
Bizzarro S, Laine ML, Buijs MJ, Brandt BW, Crielaard W, Loos BG, Zaura E., Sci Rep 6(), 2016
PMID: 26830979
Development of a classification system for periodontal diseases and conditions.
Armitage GC., Ann. Periodontol. 4(1), 1999
PMID: 10863370
A concept for clinical research triggered by suggestions from systematic reviews about adjunctive antibiotics
AUTHOR UNKNOWN, 2014
Reevaluation of initial therapy: when is the appropriate time?
Segelnick SL, Weinberg MA., J. Periodontol. 77(9), 2006
PMID: 16945039
Impact of the Daily Use of a Microcrystal Hydroxyapatite Dentifrice on De Novo Plaque Formation and Clinical/Microbiological Parameters of Periodontal Health. A Randomized Trial.
Harks I, Jockel-Schneider Y, Schlagenhauf U, May TW, Gravemeier M, Prior K, Petersilka G, Ehmke B., PLoS ONE 11(7), 2016
PMID: 27467683

AUTHOR UNKNOWN, 0
Cutadapt removes adapter sequences from high-throughput sequencing reads
AUTHOR UNKNOWN, 2011

AUTHOR UNKNOWN, 2017

AUTHOR UNKNOWN, 2016
Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses.
Callahan BJ, Sankaran K, Fukuyama JA, McMurdie PJ, Holmes SP., F1000Res 5(), 2016
PMID: 27508062
DADA2: High-resolution sample inference from Illumina amplicon data.
Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJ, Holmes SP., Nat. Methods 13(7), 2016
PMID: 27214047
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO., Nucleic Acids Res. 35(21), 2007
PMID: 17947321
DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment.
Wright ES., BMC Bioinformatics 16(), 2015
PMID: 26445311
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Saitou N, Nei M., Mol. Biol. Evol. 4(4), 1987
PMID: 3447015
phangorn: phylogenetic analysis in R.
Schliep KP., Bioinformatics 27(4), 2010
PMID: 21169378
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data.
McMurdie PJ, Holmes S., PLoS ONE 8(4), 2013
PMID: 23630581
Models and statistics for species diversity.
Kempton RA, Taylor LR., Nature 262(5571), 1976
PMID: 958461

AUTHOR UNKNOWN, 2003
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Love MI, Huber W, Anders S., Genome Biol. 15(12), 2014
PMID: 25516281
Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics.
Jonsson V, Osterlund T, Nerman O, Kristiansson E., BMC Genomics 17(), 2016
PMID: 26810311
Controlling the false discovery rate: a practical and powerful approach to multiple testing
AUTHOR UNKNOWN, 1995

AUTHOR UNKNOWN, 2009
The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation.
Abusleme L, Dupuy AK, Dutzan N, Silva N, Burleson JA, Strausbaugh LD, Gamonal J, Diaz PI., ISME J 7(5), 2013
PMID: 23303375
Dysbiosis and alterations in predicted functions of the subgingival microbiome in chronic periodontitis.
Kirst ME, Li EC, Alfant B, Chi YY, Walker C, Magnusson I, Wang GP., Appl. Environ. Microbiol. 81(2), 2014
PMID: 25398868
Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing.
Griffen AL, Beall CJ, Campbell JH, Firestone ND, Kumar PS, Yang ZK, Podar M, Leys EJ., ISME J 6(6), 2011
PMID: 22170420
Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis.
Shi B, Chang M, Martin J, Mitreva M, Lux R, Klokkevold P, Sodergren E, Weinstock GM, Haake SK, Li H., MBio 6(1), 2015
PMID: 25691586
Amoxicillin plus metronidazole in the treatment of adult periodontitis patients. A double-blind placebo-controlled study.
Winkel EG, Van Winkelhoff AJ, Timmerman MF, Van der Velden U, Van der Weijden GA., J. Clin. Periodontol. 28(4), 2001
PMID: 11314884
Metronidazole alone or with amoxicillin as adjuncts to non-surgical treatment of chronic periodontitis: a secondary analysis of microbiological results from a randomized clinical trial.
Soares GM, Mendes JA, Silva MP, Faveri M, Teles R, Socransky SS, Wang X, Figueiredo LC, Feres M., J. Clin. Periodontol. 41(4), 2014
PMID: 24834504
Waste not, want not: why rarefying microbiome data is inadmissible.
McMurdie PJ, Holmes S., PLoS Comput. Biol. 10(4), 2014
PMID: 24699258
Temporal and spatial variation of the human microbiota during pregnancy.
DiGiulio DB, Callahan BJ, McMurdie PJ, Costello EK, Lyell DJ, Robaczewska A, Sun CL, Goltsman DS, Wong RJ, Shaw G, Stevenson DK, Holmes SP, Relman DA., Proc. Natl. Acad. Sci. U.S.A. 112(35), 2015
PMID: 26283357
Levels of Candidate Periodontal Pathogens in Subgingival Biofilm.
Oliveira RR, Fermiano D, Feres M, Figueiredo LC, Teles FR, Soares GM, Faveri M., J. Dent. Res. 95(6), 2016
PMID: 26936213
Newly identified pathogens associated with periodontitis: a systematic review.
Perez-Chaparro PJ, Goncalves C, Figueiredo LC, Faveri M, Lobao E, Tamashiro N, Duarte P, Feres M., J. Dent. Res. 93(9), 2014
PMID: 25074492
Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.
Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD., Appl. Environ. Microbiol. 79(17), 2013
PMID: 23793624
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