Roland Wittler

roland.wittler@uni-bielefeld.de
ORCID logo https://orcid.org/0000-0002-2249-9880

PEVZ-ID
3721521

31 Publikationen

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  • [31]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983072
    Wittler, R. (2023). General encoding of canonical k-mers. Peer Community Journal, 3, e87. https://doi.org/10.24072/pcjournal.323
    PUB | DOI | Preprint
     
  • [30]
    2022 | Preprint | Veröffentlicht | PUB-ID: 2967089
    Parmigiani, L., Wittler, R., & Stoye, J. (2022). Revisiting pangenome openness with k-mers. bioRxiv. https://doi.org/10.1101/2022.11.15.516472
    PUB | DOI
     
  • [29]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963659 OA
    Schulz, T., Wittler, R., & Stoye, J. (2022). Sequence-based pangenomic core detection. iScience, 25(6), 104413. https://doi.org/10.1016/j.isci.2022.104413
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  • [28]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955595
    Rempel, A., & Wittler, R. (2021). SANS serif: alignment-free, whole-genome based phylogenetic reconstruction. Bioinformatics, 37(24), 4868–4870. https://doi.org/10.1093/bioinformatics/btab444
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
     
  • [27]
    2021 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2959449 OA
    Stoye J., & Wittler R. (Eds.) (2021). The Bielefeld Institute for Bioinformatics Infrastructure. Bielefeld: Universität Bielefeld, Techn. Fakultät. https://doi.org/10.4119/unibi/2959449
    PUB | PDF | DOI
     
  • [26]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950825 OA
    Schulz, T., Wittler, R., Rahmann, S., Hach, F., & Stoye, J. (2021). Detecting High Scoring Local Alignments in Pangenome Graphs. Bioinformatics, 37(16), 2266-2274. https://doi.org/10.1093/bioinformatics/btab077
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2020 | Preprint | Veröffentlicht | PUB-ID: 2945720
    Schulz, T., Wittler, R., Rahmann, S., Hach, F., & Stoye, J. (2020). Detecting High Scoring Local Alignments in Pangenome Graphs. bioRxiv. doi:10.1101/2020.09.03.280958
    PUB | DOI | Preprint
     
  • [24]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942421 OA
    Wittler, R. (2020). Alignment- and reference-free phylogenomics with colored de Bruijn graphs. Algorithms for Molecular Biology, 15(1), 4. doi:10.1186/s13015-020-00164-3
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | arXiv
     
  • [23]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574
    Luhmann, N., Lafond, M., Thévenin, A., Ouangraoua, A., Wittler, R., & Chauve, C. (2019). The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 16(4), 1364-1373. doi:10.1109/TCBB.2017.2661761
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [22]
    2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900
    Wittler, R. (2019). Alignment- and reference-free phylogenomics with colored de Bruijn graphs. In K. Huber & D. Gusfield (Eds.), LIPIcs: Vol. 143. Proceedings of WABI 2019 Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik. doi:10.4230/LIPIcs.WABI.2019.2
    PUB | DOI | Download (ext.)
     
  • [21]
    2019 | Preprint | PUB-ID: 2935604 OA
    Wittler, R. (2019). Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165
    PUB | PDF
     
  • [20]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268
    Holley, G., Wittler, R., Stoye, J., & Hach, F. (2018). Dynamic Alignment-Free and Reference-Free Read Compression. JOURNAL OF COMPUTATIONAL BIOLOGY, 25(7), 825-836. doi:10.1089/cmb.2018.0068
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [19]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
    Luhmann, N., Chauve, C., Stoye, J., & Wittler, R. (2018). Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 15(6), 2094-2100. doi:10.1109/TCBB.2018.2816034
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
    Cunha, L., Dantas, S., Gagie, T., Wittler, R., Kowada, L., & Stoye, J. (2017). Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. Proceedings of CPM 2017, LIPIcs, 78, 19:1-19:9. doi:10.4230/LIPIcs.CPM.2017.19
    PUB | DOI
     
  • [17]
    2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
    Cunha, L., Dantas, S., Gagie, T., Wittler, R., Kowada, L., & Stoye, J. (2017). Faster Jumbled Indexing for Binary Run-Length Encoded Strings. arXiv: 1702.01280
    PUB | Download (ext.) | arXiv
     
  • [16]
    2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
    Holley, G., Wittler, R., Stoye, J., & Hach, F. (2017). Dynamic Alignment-Free and Reference-Free Read Compression. Proceedings of RECOMB 2017, Lecture Notes in Bioinformatics, 10229, 50-65. doi:10.1007/978-3-319-56970-3_4
    PUB | DOI
     
  • [15]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129 OA
    Holley, G., Wittler, R., & Stoye, J. (2016). Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms for Molecular Biology, 11(1), 3. doi:10.1186/s13015-016-0066-8
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
    Luhmann, N., Thévenin, A., Ouangraoua, A., Wittler, R., & Chauve, C. (2016). The SCJ small parsimony problem for weighted gene adjacencies. Proceedings 12th International Symposium, ISBRA 2016, 9683, 200-210. doi:10.1007/978-3-319-38782-6_17
    PUB | DOI | Download (ext.) | arXiv
     
  • [13]
    2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
    Holley, G., Wittler, R., & Stoye, J. (2015). Bloom Filter Trie - a data structure for pan-genome storage. In M. Pop & H. Touzet (Eds.), Lecture Notes in Computer Science : Vol. 9289. Algorithms in Bioinformatics. WABI 2015. Proceedings (pp. 217-230). Berlin, Heidelberg: Springer. doi:10.1007/978-3-662-48221-6_16
    PUB | DOI
     
  • [12]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612 OA
    Wittler, R., Marschall, T., Schönhuth, A., & Makinen, V. (2015). Repeat- and error-aware comparison of deletions. Bioinformatics, 31(18), 2947-2954. doi:10.1093/bioinformatics/btv304
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  • [11]
    2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
    Luhmann, N., Chauve, C., Stoye, J., & Wittler, R. (2014). Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. In C. Sérgio (Ed.), LNBI: Vol. 8826. Proc. of BSB 2014 (pp. 135-143). Springer Verlag. doi:10.1007/978-3-319-12418-6_17
    PUB | DOI
     
  • [10]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942198
    Wittler, R. (2013). Correction: Unraveling overlapping deletions by agglomerative clustering. BMC Genomics, 14(Suppl 1), S16. doi:10.1186/1471-2164-14-s1-s16
    PUB | DOI
     
  • [9]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092 OA
    Wittler, R. (2013). Unraveling overlapping deletions by agglomerative clustering. BMC Genomics, 14(Suppl 1), S12. doi:10.1186/1471-2164-14-S1-S12
    PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
     
  • [8]
    2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
    Dias Vieira Braga, M., Chauve, C., Dörr, D., Jahn, K., Stoye, J., Thévenin, A., & Wittler, R. (2013). The Potential of Family-Free Genome Comparison. In C. Chauve, N. El-Mabrouk, & E. Tannier (Eds.), Computational Biology Series: Vol. 19. Models and Algorithms for Genome Evolution (pp. 287-307). London: Springer Verlag. doi:10.1007/978-1-4471-5298-9_13
    PUB | DOI
     
  • [7]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
    Manuch, J., Patterson, M., Wittler, R., Chauve, C., & Tannier, E. (2012). Linearization of ancestral multichromosomal genomes. BMC Bioinformatics, 13(Proc. of RECOMB-CG 2012), S11. doi:10.1186/1471-2105-13-S19-S11
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2329973
    Wittler, R., & Chauve, C. (2011). Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. BMC Bioinformatics, 12(Suppl. 9), S21. https://doi.org/10.1186/1471-2105-12-S9-S21
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  • [5]
    2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310613
    Chauve, C., Maňuch, J., Patterson, M., & Wittler, R. (2011). Tractability results for the Consecutive-Ones Property with multiplicity. Proceedings of CPM 2011, 6661, 90-103. https://doi.org/10.1007/978-3-642-21458-5_10
    PUB | DOI | Download (ext.)
     
  • [4]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091787
    Wittler, R., Maňuch, J., Patterson, M., & Stoye, J. (2011). Consistency of Sequence-Based Gene Clusters. Journal of Computational Biology, 18(9), 1023-1039. https://doi.org/10.1089/cmb.2011.0083
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  • [3]
    2010 | Bielefelder E-Dissertation | PUB-ID: 2301939 OA
    Wittler, R. (2010). Phylogeny-based analysis of gene clusters. Bielefeld (Germany): Bielefeld University.
    PUB | PDF | Download (ext.)
     
  • [2]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919217
    Wittler, R., & Stoye, J. (2010). Consistency of Sequence-based Gene Clusters. Proc. of Recomb-CG 2010, LNBI, 6398, 252-263. Springer Verlag. https://doi.org/10.1007/978-3-642-16181-0_21
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  • [1]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507
    Stoye, J., & Wittler, R. (2009). A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(3), 387-400. https://doi.org/10.1109/TCBB.2008.135
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