PUB - Publikationen an der Universität Bielefeld

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• [31]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983072

  Wittler, R., 2023. General encoding of canonical k-mers. Peer Community Journal, 3: e87.

  PUB | DOI | Preprint
   
• [30]
  

  2022 | Preprint | Veröffentlicht | PUB-ID: 2967089

  Parmigiani, L., Wittler, R., & Stoye, J., 2022. Revisiting pangenome openness with k-mers. bioRxiv.

  PUB | DOI
   
• [29]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963659

  Schulz, T., Wittler, R., & Stoye, J., 2022. Sequence-based pangenomic core detection. iScience, 25(6): 104413.

  PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [28]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955595

  Rempel, A., & Wittler, R., 2021. SANS serif: alignment-free, whole-genome based phylogenetic reconstruction. Bioinformatics, 37(24), p 4868–4870.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
   
• [27]
  

  2021 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2959449

  J. Stoye & R. Wittler, eds., 2021. The Bielefeld Institute for Bioinformatics Infrastructure, Bielefeld: Universität Bielefeld, Techn. Fakultät.

  PUB | PDF | DOI
   
• [26]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950825

  Schulz, T., et al., 2021. Detecting High Scoring Local Alignments in Pangenome Graphs. Bioinformatics, 37(16), p 2266-2274.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2020 | Preprint | Veröffentlicht | PUB-ID: 2945720

  Schulz, T., et al., 2020. Detecting High Scoring Local Alignments in Pangenome Graphs. bioRxiv.

  PUB | DOI | Preprint
   
• [24]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942421

  Wittler, R., 2020. Alignment- and reference-free phylogenomics with colored de Bruijn graphs. Algorithms for Molecular Biology, 15(1): 4.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC | arXiv
   
• [23]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574

  Luhmann, N., et al., 2019. The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 16(4), p 1364-1373.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900

  Wittler, R., 2019. Alignment- and reference-free phylogenomics with colored de Bruijn graphs. In K. Huber & D. Gusfield, eds. Proceedings of WABI 2019. LIPIcs. no.143 Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik.

  PUB | DOI | Download (ext.)
   
• [21]
  

  2019 | Preprint | PUB-ID: 2935604

  Wittler, R., 2019. Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165.

  PUB | PDF
   
• [20]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268

  Holley, G., et al., 2018. Dynamic Alignment-Free and Reference-Free Read Compression. JOURNAL OF COMPUTATIONAL BIOLOGY, 25(7), p 825-836.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481

  Luhmann, N., et al., 2018. Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 15(6), p 2094-2100.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409

  Cunha, L., et al., 2017. Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. In Proceedings of CPM 2017. LIPIcs. no.78 pp. 19:1-19:9.

  PUB | DOI
   
• [17]
  

  2017 | Preprint | Veröffentlicht | PUB-ID: 2908521

  Cunha, L., et al., 2017. Faster Jumbled Indexing for Binary Run-Length Encoded Strings. arXiv: 1702.01280.

  PUB | Download (ext.) | arXiv
   
• [16]
  

  2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587

  Holley, G., et al., 2017. Dynamic Alignment-Free and Reference-Free Read Compression. In Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics. no.10229 pp. 50-65.

  PUB | DOI
   
• [15]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129

  Holley, G., Wittler, R., & Stoye, J., 2016. Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms for Molecular Biology, 11(1): 3.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740

  Luhmann, N., et al., 2016. The SCJ small parsimony problem for weighted gene adjacencies. In Proceedings 12th International Symposium, ISBRA 2016. Lecture Notes in Computer Science. no.9683 Springer International Publishing, pp. 200-210.

  PUB | DOI | Download (ext.) | arXiv
   
• [13]
  

  2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497

  Holley, G., Wittler, R., & Stoye, J., 2015. Bloom Filter Trie - a data structure for pan-genome storage. In M. Pop & H. Touzet, eds. Algorithms in Bioinformatics. WABI 2015. Proceedings. Lecture Notes in Computer Science . no.9289 Berlin, Heidelberg: Springer, pp. 217-230.

  PUB | DOI
   
• [12]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612

  Wittler, R., et al., 2015. Repeat- and error-aware comparison of deletions. Bioinformatics, 31(18), p 2947-2954.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122

  Luhmann, N., et al., 2014. Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. In C. Sérgio, ed. Proc. of BSB 2014. LNBI. no.8826 Springer Verlag, pp. 135-143.

  PUB | DOI
   
• [10]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942198

  Wittler, R., 2013. Correction: Unraveling overlapping deletions by agglomerative clustering. BMC Genomics, 14(Suppl 1): S16.

  PUB | DOI
   
• [9]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092

  Wittler, R., 2013. Unraveling overlapping deletions by agglomerative clustering. BMC Genomics, 14(Suppl 1): S12.

  PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648

  Dias Vieira Braga, M., et al., 2013. The Potential of Family-Free Genome Comparison. In C. Chauve, N. El-Mabrouk, & E. Tannier, eds. Models and Algorithms for Genome Evolution. Computational Biology Series. no.19 London: Springer Verlag, pp. 287-307.

  PUB | DOI
   
• [7]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300

  Manuch, J., et al., 2012. Linearization of ancestral multichromosomal genomes. BMC Bioinformatics, 13(Proc. of RECOMB-CG 2012): S11.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2329973

  Wittler, R., & Chauve, C., 2011. Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. BMC Bioinformatics, 12(Suppl. 9), p S21.

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• [5]
  

  2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310613

  Chauve, C., et al., 2011. Tractability results for the Consecutive-Ones Property with multiplicity. In Proceedings of CPM 2011. no.6661 pp. 90-103.

  PUB | DOI | Download (ext.)
   
• [4]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091787

  Wittler, R., et al., 2011. Consistency of Sequence-Based Gene Clusters. Journal of Computational Biology, 18(9), p 1023-1039.

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• [3]
  

  2010 | Bielefelder E-Dissertation | PUB-ID: 2301939

  Wittler, R., 2010. Phylogeny-based analysis of gene clusters, Bielefeld (Germany): Bielefeld University.

  PUB | PDF | Download (ext.)
   
• [2]
  

  2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919217

  Wittler, R., & Stoye, J., 2010. Consistency of Sequence-based Gene Clusters. In Proc. of Recomb-CG 2010. LNBI. no.6398 Springer Verlag, pp. 252-263.

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• [1]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507

  Stoye, J., & Wittler, R., 2009. A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(3), p 387-400.

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