31 Publikationen
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963659Schulz, T., Wittler, R., and Stoye, J. (2022). Sequence-based pangenomic core detection. iScience 25:104413.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955595Rempel, A., and Wittler, R. (2021). SANS serif: alignment-free, whole-genome based phylogenetic reconstruction. Bioinformatics 37, 4868–4870.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574Luhmann, N., Lafond, M., Thévenin, A., Ouangraoua, A., Wittler, R., and Chauve, C. (2019). The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics 16, 1364-1373.PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900Wittler, R. (2019). “Alignment- and reference-free phylogenomics with colored de Bruijn graphs” in Proceedings of WABI 2019, Huber, K., and Gusfield, D. eds. LIPIcs, vol. 143, (Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik).PUB | DOI | Download (ext.)
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268Holley, G., Wittler, R., Stoye, J., and Hach, F. (2018). Dynamic Alignment-Free and Reference-Free Read Compression. JOURNAL OF COMPUTATIONAL BIOLOGY 25, 825-836.PUB | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481Luhmann, N., Chauve, C., Stoye, J., and Wittler, R. (2018). Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics 15, 2094-2100.PUB | DOI | WoS | PubMed | Europe PMC
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2017 | Preprint | Veröffentlicht | PUB-ID: 2908521Cunha, L., Dantas, S., Gagie, T., Wittler, R., Kowada, L., and Stoye, J. (2017). Faster Jumbled Indexing for Binary Run-Length Encoded Strings. arXiv: 1702.01280.PUB | Download (ext.) | arXiv
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740Luhmann, N., Thévenin, A., Ouangraoua, A., Wittler, R., and Chauve, C. (2016). “The SCJ small parsimony problem for weighted gene adjacencies” in Proceedings 12th International Symposium, ISBRA 2016 Lecture Notes in Computer Science, vol. 9683, (Springer International Publishing), 200-210.PUB | DOI | Download (ext.) | arXiv
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497Holley, G., Wittler, R., and Stoye, J. (2015). “Bloom Filter Trie - a data structure for pan-genome storage” in Algorithms in Bioinformatics. WABI 2015. Proceedings, Pop, M., and Touzet, H. eds. Lecture Notes in Computer Science , vol. 9289, (Berlin, Heidelberg: Springer), 217-230.PUB | DOI
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122Luhmann, N., Chauve, C., Stoye, J., and Wittler, R. (2014). “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework” in Proc. of BSB 2014, Sérgio, C. ed. LNBI, vol. 8826, (Springer Verlag), 135-143.PUB | DOI
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092Wittler, R. (2013). Unraveling overlapping deletions by agglomerative clustering. BMC Genomics 14:S12.PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648Dias Vieira Braga, M., Chauve, C., Dörr, D., Jahn, K., Stoye, J., Thévenin, A., and Wittler, R. (2013). “The Potential of Family-Free Genome Comparison” in Models and Algorithms for Genome Evolution, Chauve, C., El-Mabrouk, N., and Tannier, E. eds. Computational Biology Series, vol. 19, (London: Springer Verlag), 287-307.PUB | DOI
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300Manuch, J., Patterson, M., Wittler, R., Chauve, C., and Tannier, E. (2012). Linearization of ancestral multichromosomal genomes. BMC Bioinformatics 13:S11.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2329973Wittler, R., and Chauve, C. (2011). Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. BMC Bioinformatics 12, S21.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310613Chauve, C., Maňuch, J., Patterson, M., and Wittler, R. (2011). “Tractability results for the Consecutive-Ones Property with multiplicity” in Proceedings of CPM 2011, vol. 6661, 90-103.PUB | DOI | Download (ext.)
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091787Wittler, R., Maňuch, J., Patterson, M., and Stoye, J. (2011). Consistency of Sequence-Based Gene Clusters. Journal of Computational Biology 18, 1023-1039.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2010 | Bielefelder E-Dissertation | PUB-ID: 2301939Wittler, R. (2010). Phylogeny-based analysis of gene clusters. Bielefeld (Germany): Bielefeld University.PUB | PDF | Download (ext.)
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919217Wittler, R., and Stoye, J. (2010). “Consistency of Sequence-based Gene Clusters” in Proc. of Recomb-CG 2010 LNBI, vol. 6398, (Springer Verlag), 252-263.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507Stoye, J., and Wittler, R. (2009). A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics 6, 387-400.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC