Roland Wittler

roland.wittler@uni-bielefeld.de
ORCID logo https://orcid.org/0000-0002-2249-9880

PEVZ-ID
3721521

31 Publikationen

Alle markieren

  • [31]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983072
    Wittler, Roland. 2023. “General encoding of canonical k-mers”. Peer Community Journal 3: e87.
    PUB | DOI | Preprint
     
  • [30]
    2022 | Preprint | Veröffentlicht | PUB-ID: 2967089
    Parmigiani, Luca, Wittler, Roland, and Stoye, Jens. 2022. “Revisiting pangenome openness with k-mers”. bioRxiv.
    PUB | DOI
     
  • [29]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963659 OA
    Schulz, Tizian, Wittler, Roland, and Stoye, Jens. 2022. “Sequence-based pangenomic core detection”. iScience 25 (6): 104413.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [28]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955595
    Rempel, Andreas, and Wittler, Roland. 2021. “SANS serif: alignment-free, whole-genome based phylogenetic reconstruction”. Bioinformatics 37 (24): 4868–4870.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
     
  • [27]
    2021 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2959449 OA
    Stoye, Jens, and Wittler, Roland, eds. 2021. The Bielefeld Institute for Bioinformatics Infrastructure. Bielefeld: Universität Bielefeld, Techn. Fakultät.
    PUB | PDF | DOI
     
  • [26]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950825 OA
    Schulz, Tizian, Wittler, Roland, Rahmann, Sven, Hach, Faraz, and Stoye, Jens. 2021. “Detecting High Scoring Local Alignments in Pangenome Graphs”. Bioinformatics 37 (16): 2266-2274.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2020 | Preprint | Veröffentlicht | PUB-ID: 2945720
    Schulz, Tizian, Wittler, Roland, Rahmann, Sven, Hach, Faraz, and Stoye, Jens. 2020. “Detecting High Scoring Local Alignments in Pangenome Graphs”. bioRxiv.
    PUB | DOI | Preprint
     
  • [24]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942421 OA
    Wittler, Roland. 2020. “Alignment- and reference-free phylogenomics with colored de Bruijn graphs”. Algorithms for Molecular Biology 15 (1): 4.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | arXiv
     
  • [23]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574
    Luhmann, Nina, Lafond, Manuel, Thévenin, Annelyse, Ouangraoua, Aida, Wittler, Roland, and Chauve, Cedric. 2019. “The SCJ Small Parsimony Problem for Weighted Gene Adjacencies”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (4): 1364-1373.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [22]
    2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900
    Wittler, Roland. 2019. “Alignment- and reference-free phylogenomics with colored de Bruijn graphs”. In Proceedings of WABI 2019, ed. Katharina Huber and Dan Gusfield. Vol. 143. LIPIcs. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik.
    PUB | DOI | Download (ext.)
     
  • [21]
    2019 | Preprint | PUB-ID: 2935604 OA
    Wittler, Roland. 2019. “Alignment- and reference-free phylogenomics with colored de-Bruijn graphs”. arXiv:1905.04165.
    PUB | PDF
     
  • [20]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268
    Holley, Guillaume, Wittler, Roland, Stoye, Jens, and Hach, Faraz. 2018. “Dynamic Alignment-Free and Reference-Free Read Compression”. JOURNAL OF COMPUTATIONAL BIOLOGY 25 (7): 825-836.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [19]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
    Luhmann, Nina, Chauve, Cedric, Stoye, Jens, and Wittler, Roland. 2018. “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 15 (6): 2094-2100.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
    Cunha, Luis, Dantas, Simone, Gagie, Travis, Wittler, Roland, Kowada, Luis, and Stoye, Jens. 2017. “Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings”. In Proceedings of CPM 2017, 78:19:1-19:9. LIPIcs.
    PUB | DOI
     
  • [17]
    2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
    Cunha, Luís, Dantas, Simone, Gagie, Travis, Wittler, Roland, Kowada, Luis, and Stoye, Jens. 2017. “Faster Jumbled Indexing for Binary Run-Length Encoded Strings”. arXiv: 1702.01280.
    PUB | Download (ext.) | arXiv
     
  • [16]
    2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
    Holley, Guillaume, Wittler, Roland, Stoye, Jens, and Hach, Faraz. 2017. “Dynamic Alignment-Free and Reference-Free Read Compression”. In Proceedings of RECOMB 2017, 10229:50-65. Lecture Notes in Bioinformatics.
    PUB | DOI
     
  • [15]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129 OA
    Holley, Guillaume, Wittler, Roland, and Stoye, Jens. 2016. “Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage”. Algorithms for Molecular Biology 11 (1): 3.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
    Luhmann, Nina, Thévenin, Annelyse, Ouangraoua, Aida, Wittler, Roland, and Chauve, Cedric. 2016. “The SCJ small parsimony problem for weighted gene adjacencies”. In Proceedings 12th International Symposium, ISBRA 2016, 9683:200-210. Lecture Notes in Computer Science. Springer International Publishing.
    PUB | DOI | Download (ext.) | arXiv
     
  • [13]
    2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
    Holley, Guillaume, Wittler, Roland, and Stoye, Jens. 2015. “Bloom Filter Trie - a data structure for pan-genome storage”. In Algorithms in Bioinformatics. WABI 2015. Proceedings, ed. Mihai Pop and Hélène Touzet, 9289:217-230. Lecture Notes in Computer Science . Berlin, Heidelberg: Springer.
    PUB | DOI
     
  • [12]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612 OA
    Wittler, Roland, Marschall, Tobias, Schönhuth, Alexander, and Makinen, Veli. 2015. “Repeat- and error-aware comparison of deletions”. Bioinformatics 31 (18): 2947-2954.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
    Luhmann, Nina, Chauve, Cedric, Stoye, Jens, and Wittler, Roland. 2014. “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”. In Proc. of BSB 2014, ed. Campos Sérgio, 8826:135-143. LNBI. Springer Verlag.
    PUB | DOI
     
  • [10]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942198
    Wittler, Roland. 2013. “Correction: Unraveling overlapping deletions by agglomerative clustering”. BMC Genomics 14 (Suppl 1): S16.
    PUB | DOI
     
  • [9]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092 OA
    Wittler, Roland. 2013. “Unraveling overlapping deletions by agglomerative clustering”. BMC Genomics 14 (Suppl 1): S12.
    PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
     
  • [8]
    2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
    Dias Vieira Braga, Marília, Chauve, Cedric, Dörr, Daniel, Jahn, Katharina, Stoye, Jens, Thévenin, Annelyse, and Wittler, Roland. 2013. “The Potential of Family-Free Genome Comparison”. In Models and Algorithms for Genome Evolution, ed. Cedric Chauve, Nadia El-Mabrouk, and Eric Tannier, 19:287-307. Computational Biology Series. London: Springer Verlag.
    PUB | DOI
     
  • [7]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
    Manuch, Jan, Patterson, Murray, Wittler, Roland, Chauve, Cedric, and Tannier, Eric. 2012. “Linearization of ancestral multichromosomal genomes”. BMC Bioinformatics 13 (Proc. of RECOMB-CG 2012): S11.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2329973
    Wittler, Roland, and Chauve, Cedric. 2011. “Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes”, BMC Bioinformatics, 12 (Suppl. 9): S21.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [5]
    2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310613
    Chauve, Cedric, Maňuch, Ján, Patterson, Murray, and Wittler, Roland. 2011. “Tractability results for the Consecutive-Ones Property with multiplicity”. In Proceedings of CPM 2011, 6661:90-103.
    PUB | DOI | Download (ext.)
     
  • [4]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091787
    Wittler, Roland, Maňuch, Ján, Patterson, Murray, and Stoye, Jens. 2011. “Consistency of Sequence-Based Gene Clusters”. Journal of Computational Biology 18 (9): 1023-1039.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [3]
    2010 | Bielefelder E-Dissertation | PUB-ID: 2301939 OA
    Wittler, Roland. 2010. Phylogeny-based analysis of gene clusters. Bielefeld (Germany): Bielefeld University.
    PUB | PDF | Download (ext.)
     
  • [2]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919217
    Wittler, Roland, and Stoye, Jens. 2010. “Consistency of Sequence-based Gene Clusters”. In Proc. of Recomb-CG 2010, 6398:252-263. LNBI. Springer Verlag.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [1]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507
    Stoye, Jens, and Wittler, Roland. 2009. “A Unified Approach for Reconstructing Ancient Gene Clusters”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (3): 387-400.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
Markierte Publikation(en)

Suche

Publikationen filtern

Darstellung / Sortierung

Export / Einbettung