Alignment- and reference-free phylogenomics with colored de-Bruijn graphs

Wittler R (2019)
arXiv:1905.04165.

Preprint | Englisch
 
Download
OA 855.01 KB
Abstract / Bemerkung
We present a new whole-genome based approach to infer large-scale phylogenies that is alignment- and reference-free. In contrast to other methods, it does not rely on pairwise comparisons to determine distances to infer edges in a tree. Instead, a colored de-Bruijn graph is constructed, and information on common subsequences is extracted to infer phylogenetic splits. Application to different datasets confirms robustness of the approach. A comparison to other state-of-the-art whole-genome based methods indicates comparable or higher accuracy and efficiency.
Erscheinungsjahr
2019
Zeitschriftentitel
arXiv:1905.04165
Page URI
https://pub.uni-bielefeld.de/record/2935604

Zitieren

Wittler R. Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165. 2019.
Wittler, R. (2019). Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165
Wittler, Roland. 2019. “Alignment- and reference-free phylogenomics with colored de-Bruijn graphs”. arXiv:1905.04165.
Wittler, R. (2019). Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165.
Wittler, R., 2019. Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165.
R. Wittler, “Alignment- and reference-free phylogenomics with colored de-Bruijn graphs”, arXiv:1905.04165, 2019.
Wittler, R.: Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165. (2019).
Wittler, Roland. “Alignment- and reference-free phylogenomics with colored de-Bruijn graphs”. arXiv:1905.04165 (2019).
Alle Dateien verfügbar unter der/den folgenden Lizenz(en):
Copyright Statement:
Dieses Objekt ist durch das Urheberrecht und/oder verwandte Schutzrechte geschützt. [...]
Volltext(e)
Name
855.01 KB
Access Level
OA Open Access
Zuletzt Hochgeladen
2019-05-16T07:12:35Z
MD5 Prüfsumme
985400573ccddaad95c622bc279072fa


Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Suchen in

Google Scholar