PUB - Publikationen an der Universität Bielefeld

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• [31]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983072

  Wittler, Roland. “General encoding of canonical k-mers”. Peer Community Journal 3 (2023): e87.

  PUB | DOI | Preprint
   
• [30]
  

  2022 | Preprint | Veröffentlicht | PUB-ID: 2967089

  Parmigiani, Luca, Wittler, Roland, and Stoye, Jens. “Revisiting pangenome openness with k-mers”. bioRxiv (2022).

  PUB | DOI
   
• [29]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963659

  Schulz, Tizian, Wittler, Roland, and Stoye, Jens. “Sequence-based pangenomic core detection”. iScience 25.6 (2022): 104413.

  PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [28]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955595

  Rempel, Andreas, and Wittler, Roland. “SANS serif: alignment-free, whole-genome based phylogenetic reconstruction”. Bioinformatics 37.24 (2021): 4868–4870.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
   
• [27]
  

  2021 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2959449

  Jens Stoye and Roland Wittler, eds. The Bielefeld Institute for Bioinformatics Infrastructure. Bielefeld: Universität Bielefeld, Techn. Fakultät, 2021.

  PUB | PDF | DOI
   
• [26]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950825

  Schulz, Tizian, Wittler, Roland, Rahmann, Sven, Hach, Faraz, and Stoye, Jens. “Detecting High Scoring Local Alignments in Pangenome Graphs”. Bioinformatics 37.16 (2021): 2266-2274.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2020 | Preprint | Veröffentlicht | PUB-ID: 2945720

  Schulz, Tizian, Wittler, Roland, Rahmann, Sven, Hach, Faraz, and Stoye, Jens. “Detecting High Scoring Local Alignments in Pangenome Graphs”. bioRxiv (2020).

  PUB | DOI | Preprint
   
• [24]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942421

  Wittler, Roland. “Alignment- and reference-free phylogenomics with colored de Bruijn graphs”. Algorithms for Molecular Biology 15.1 (2020): 4.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC | arXiv
   
• [23]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574

  Luhmann, Nina, Lafond, Manuel, Thévenin, Annelyse, Ouangraoua, Aida, Wittler, Roland, and Chauve, Cedric. “The SCJ Small Parsimony Problem for Weighted Gene Adjacencies”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 16.4 (2019): 1364-1373.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900

  Wittler, Roland. “Alignment- and reference-free phylogenomics with colored de Bruijn graphs”. Proceedings of WABI 2019. Ed. Katharina Huber and Dan Gusfield. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2019.Vol. 143. LIPIcs.

  PUB | DOI | Download (ext.)
   
• [21]
  

  2019 | Preprint | PUB-ID: 2935604

  Wittler, Roland. “Alignment- and reference-free phylogenomics with colored de-Bruijn graphs”. arXiv:1905.04165 (2019).

  PUB | PDF
   
• [20]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268

  Holley, Guillaume, Wittler, Roland, Stoye, Jens, and Hach, Faraz. “Dynamic Alignment-Free and Reference-Free Read Compression”. JOURNAL OF COMPUTATIONAL BIOLOGY 25.7 (2018): 825-836.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481

  Luhmann, Nina, Chauve, Cedric, Stoye, Jens, and Wittler, Roland. “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 15.6 (2018): 2094-2100.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409

  Cunha, Luis, Dantas, Simone, Gagie, Travis, Wittler, Roland, Kowada, Luis, and Stoye, Jens. “Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings”. Proceedings of CPM 2017. 2017.Vol. 78. LIPIcs. 19:1-19:9.

  PUB | DOI
   
• [17]
  

  2017 | Preprint | Veröffentlicht | PUB-ID: 2908521

  Cunha, Luís, Dantas, Simone, Gagie, Travis, Wittler, Roland, Kowada, Luis, and Stoye, Jens. “Faster Jumbled Indexing for Binary Run-Length Encoded Strings”. arXiv: 1702.01280 (2017).

  PUB | Download (ext.) | arXiv
   
• [16]
  

  2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587

  Holley, Guillaume, Wittler, Roland, Stoye, Jens, and Hach, Faraz. “Dynamic Alignment-Free and Reference-Free Read Compression”. Proceedings of RECOMB 2017. 2017.Vol. 10229. Lecture Notes in Bioinformatics. 50-65.

  PUB | DOI
   
• [15]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129

  Holley, Guillaume, Wittler, Roland, and Stoye, Jens. “Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage”. Algorithms for Molecular Biology 11.1 (2016): 3.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740

  Luhmann, Nina, Thévenin, Annelyse, Ouangraoua, Aida, Wittler, Roland, and Chauve, Cedric. “The SCJ small parsimony problem for weighted gene adjacencies”. Proceedings 12th International Symposium, ISBRA 2016. Springer International Publishing, 2016.Vol. 9683. Lecture Notes in Computer Science. 200-210.

  PUB | DOI | Download (ext.) | arXiv
   
• [13]
  

  2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497

  Holley, Guillaume, Wittler, Roland, and Stoye, Jens. “Bloom Filter Trie - a data structure for pan-genome storage”. Algorithms in Bioinformatics. WABI 2015. Proceedings. Ed. Mihai Pop and Hélène Touzet. Berlin, Heidelberg: Springer, 2015.Vol. 9289. Lecture Notes in Computer Science . 217-230.

  PUB | DOI
   
• [12]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612

  Wittler, Roland, Marschall, Tobias, Schönhuth, Alexander, and Makinen, Veli. “Repeat- and error-aware comparison of deletions”. Bioinformatics 31.18 (2015): 2947-2954.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122

  Luhmann, Nina, Chauve, Cedric, Stoye, Jens, and Wittler, Roland. “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”. Proc. of BSB 2014. Ed. Campos Sérgio. Springer Verlag, 2014.Vol. 8826. LNBI. 135-143.

  PUB | DOI
   
• [10]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942198

  Wittler, Roland. “Correction: Unraveling overlapping deletions by agglomerative clustering”. BMC Genomics 14.Suppl 1 (2013): S16.

  PUB | DOI
   
• [9]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092

  Wittler, Roland. “Unraveling overlapping deletions by agglomerative clustering”. BMC Genomics 14.Suppl 1 (2013): S12.

  PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648

  Dias Vieira Braga, Marília, Chauve, Cedric, Dörr, Daniel, Jahn, Katharina, Stoye, Jens, Thévenin, Annelyse, and Wittler, Roland. “The Potential of Family-Free Genome Comparison”. Models and Algorithms for Genome Evolution. Ed. Cedric Chauve, Nadia El-Mabrouk, and Eric Tannier. London: Springer Verlag, 2013.Vol. 19. Computational Biology Series. 287-307.

  PUB | DOI
   
• [7]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300

  Manuch, Jan, Patterson, Murray, Wittler, Roland, Chauve, Cedric, and Tannier, Eric. “Linearization of ancestral multichromosomal genomes”. BMC Bioinformatics 13.Proc. of RECOMB-CG 2012 (2012): S11.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2329973

  Wittler, Roland, and Chauve, Cedric. “Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes”. BMC Bioinformatics 12.Suppl. 9 (2011): S21.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [5]
  

  2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310613

  Chauve, Cedric, Maňuch, Ján, Patterson, Murray, and Wittler, Roland. “Tractability results for the Consecutive-Ones Property with multiplicity”. Proceedings of CPM 2011. 2011.Vol. 6661. 90-103.

  PUB | DOI | Download (ext.)
   
• [4]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091787

  Wittler, Roland, Maňuch, Ján, Patterson, Murray, and Stoye, Jens. “Consistency of Sequence-Based Gene Clusters”. Journal of Computational Biology 18.9 (2011): 1023-1039.

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• [3]
  

  2010 | Bielefelder E-Dissertation | PUB-ID: 2301939

  Wittler, Roland. Phylogeny-based analysis of gene clusters. Bielefeld (Germany): Bielefeld University, 2010.

  PUB | PDF | Download (ext.)
   
• [2]
  

  2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919217

  Wittler, Roland, and Stoye, Jens. “Consistency of Sequence-based Gene Clusters”. Proc. of Recomb-CG 2010. Springer Verlag, 2010.Vol. 6398. LNBI. 252-263.

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• [1]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507

  Stoye, Jens, and Wittler, Roland. “A Unified Approach for Reconstructing Ancient Gene Clusters”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 6.3 (2009): 387-400.

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