PUB - Publikationen an der Universität Bielefeld

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• [23]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996

  Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14
  Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2021)
  Journal of Fungi 7(10): 832.

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• [22]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131

  De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite
  Pauli M, Chakarov N, Rupp O, Kalinowski J, Goesmann A, Sorenson M, Krüger O, Hoffman J (2015)
  BMC Genomics 16(1): 1038.

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• [21]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605

  The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms
  Rupp O, Brinkrolf K, Buerth C, Kunigo M, Schneider J, Jaenicke S, Goesmann A, Pühler A, Jaeger K-E, Ernst JF (2015)
  Journal of Biotechnology 211: 20-30.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718773

  The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells
  Wippermann A, Rupp O, Brinkrolf K, Hoffrogge R, Noll T (2015)
  Journal of Biotechnology 199: 38-46.

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• [19]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633946

  The more the better - polyandry and genetic similarity are positively linked to reproductive success in a natural population of terrestrial salamanders (Salamandra salamandra)
  Caspers B, Krause ET, Hendrix R, Kopp M, Rupp O, Rosentreter K, Steinfartz S (2014)
  Molecular Ecology 23(1): 239-250.

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• [18]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819

  Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells
  Wippermann A, Klausing S, Rupp O, Albaum S, Büntemeyer H, Noll T, Hoffrogge R (2014)
  Applied Microbiology and Biotechnology 98(2): 579-589.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946

  The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
  Dohm JC, Minoche AE, Holtgräwe D, Capella-Gutiérrez S, Zakrzewski F, Tafer H, Rupp O, Rosleff Sörensen T, Stracke R, Reinhardt R, Goesmann A, et al. (2014)
  Nature 505(7484): 546-549.

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• [16]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552

  Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)
  Becker J, Timmermann C, Rupp O, Albaum S, Brinkrolf K, Goesmann A, Pühler A, Tauch A, Noll T (2014)
  Journal of biotechnology 178: 23-31.

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• [15]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773

  Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines
  Rupp O, Becker J, Brinkrolf K, Timmermann C, Borth N, Pühler A, Noll T, Goesmann A (2014)
  PLoS ONE 9(1): e85568.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310

  Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)
  Wibberg D, Jelonek L, Rupp O, Kröber M, Goesmann A, Grosch R, Pühler A, Schlüter A (2014)
  Fungal Biology 118(9-10): 800-813.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2634909

  What remains from a 454 run: estimation of success rates of microsatellite loci development in selected newt species (Calotriton asper, Lissotriton helveticus, and Triturus cristatus) and comparison with Illumina-based approaches
  Drechsler A, Geller D, Freund K, Schmeller DS, Künzel S, Rupp O, Loyau A, Denoël M, Valbuena-Ureña E, Steinfartz S (2013)
  Ecology and Evolution 3(11): 3947-3957.

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• [12]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908

  Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14
  Wibberg D, Jelonek L, Rupp O, Kröber M, Eikmeyer FG, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A (2013)
  Journal of Biotechnology 167(2): 142-155.

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• [11]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943

  Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana
  Vences M, Hauswaldt S, Steinfartz S, Rupp O, Goesmann A, Künzel S, Orozco-Terwengel P, Vieites DR, Nieto-Roman S, Haas S, Laugsch C, et al. (2013)
  Molecular phylogenetics and evolution 68(3): 657-670.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [10]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581

  Chinese hamster genome sequenced from sorted chromosomes
  Brinkrolf K, Rupp O, Laux H, Kollin F, Ernst W, Linke B, Kofler R, Romand S, Hesse F, Budach WE, Galosy S, et al. (2013)
  Nature Biotechnology 31(8): 694-695.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668

  Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production
  Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, et al. (2013)
  BMC Genomics 14(1): 926.

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• [8]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202

  MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets
  Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, Schlüter A, Goesmann A (2013)
  Journal of Biotechnology 167(2): 156-165.

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• [7]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364

  Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics
  Meleady P, Hoffrogge R, Henry M, Rupp O, Bort JH, Clarke C, Brinkrolf K, Kelly S, Müller B, Doolan P, Hackl M, et al. (2012)
  Biotechnology and Bioengineering 109(6): 1386-1394.

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• [6]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002

  Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities
  Schneider J, Rupp O, Trost E, Jaenicke S, Passoth V, Goesmann A, Tauch A, Brinkrolf K (2012)
  FEMS Yeast Research 12(3): 382-386.

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• [5]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526

  Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines
  Hackl M, Jadhav V, Jakobi T, Rupp O, Brinkrolf K, Goesmann A, Pühler A, Noll T, Borth N, Grillari J (2012)
  Journal of Biotechnology 158(3): 151-155.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768

  Next-generation sequencing of the CHO cell transcriptome
  Becker J, Timmermann C, Jakobi T, Rupp O, Szczepanowski R, Hackl M, Goesmann A, Tauch A, Borth N, Grillari J, Pühler A, et al. (2011)
  BMC Proceedings 5(Suppl. 8): P6.

  PUB | DOI
   
• [3]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731

  Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid
  Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, et al. (2011)
  Journal of Biotechnology 155(1): 50-62.

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• [2]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576

  Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing
  Becker J, Hackel M, Jakobi T, Rupp O, Schneider J, Szczepanowski R, Bekel T, Borth N, Goesmann A, Grillari J, Kaltschmidt C, et al. (2011)
  Journal of Biotechnology 156(3): 227-235.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [1]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447

  The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies
  Bekel T, Henckel K, Küster H, Meyer F, Mittard-Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, et al. (2009)
  Journal of Biotechnology 140(1-2): 3-12.

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