Oliver Rupp
PEVZ-ID
23 Publikationen
-
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996Wibberg, Daniel, Genzel, Franziska, Verwaaijen, Bart, Blom, Jochen, Rupp, Oliver, Goesmann, Alexander, Zrenner, Rita, Grosch, Rita, Pühler, Alfred, and Schlüter, Andreas. 2021. “Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14”. Journal of Fungi 7 (10): 832.
-
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131Pauli, Martina, Chakarov, Nayden, Rupp, Oliver, Kalinowski, Jörn, Goesmann, Alexander, Sorenson, Michael, Krüger, Oliver, and Hoffman, Joseph. 2015. “De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite”. BMC Genomics 16 (1): 1038.
-
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605Rupp, Oliver, Brinkrolf, Karina, Buerth, Christoph, Kunigo, Maya, Schneider, Jessica, Jaenicke, Sebastian, Goesmann, Alexander, Pühler, Alfred, Jaeger, Karl-Erich, and Ernst, Joachim F. 2015. “The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms”. Journal of Biotechnology 211: 20-30.
-
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718773Wippermann, Anna, Rupp, Oliver, Brinkrolf, Karina, Hoffrogge, Raimund, and Noll, Thomas. 2015. “The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells”. Journal of Biotechnology 199: 38-46.
-
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633946Caspers, Barbara, Krause, E. Tobias, Hendrix, Ralf, Kopp, Michael, Rupp, Oliver, Rosentreter, Katrin, and Steinfartz, Sebastian. 2014. “The more the better - polyandry and genetic similarity are positively linked to reproductive success in a natural population of terrestrial salamanders (Salamandra salamandra)”. Molecular Ecology 23 (1): 239-250.
-
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819Wippermann, Anna, Klausing, Sandra, Rupp, Oliver, Albaum, Stefan, Büntemeyer, Heino, Noll, Thomas, and Hoffrogge, Raimund. 2014. “Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells”. Applied Microbiology and Biotechnology 98 (2): 579-589.
-
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946Dohm, Juliane C, Minoche, André E, Holtgräwe, Daniela, Capella-Gutiérrez, Salvador, Zakrzewski, Falk, Tafer, Hakim, Rupp, Oliver, et al. 2014. “The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)”. Nature 505 (7484): 546-549.
-
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552Becker, Jennifer, Timmermann, Christina, Rupp, Oliver, Albaum, Stefan, Brinkrolf, Karina, Goesmann, Alexander, Pühler, Alfred, Tauch, Andreas, and Noll, Thomas. 2014. “Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)”. Journal of biotechnology 178: 23-31.
-
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773Rupp, Oliver, Becker, Jennifer, Brinkrolf, Karina, Timmermann, Christina, Borth, Nicole, Pühler, Alfred, Noll, Thomas, and Goesmann, Alexander. 2014. “Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines”. PLoS ONE 9 (1): e85568.
-
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310Wibberg, Daniel, Jelonek, Lukas, Rupp, Oliver, Kröber, Magdalena, Goesmann, Alexander, Grosch, Rita, Pühler, Alfred, and Schlüter, Andreas. 2014. “Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)”. Fungal Biology 118 (9-10): 800-813.
-
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2634909Drechsler, Axel, Geller, Daniel, Freund, Katharina, Schmeller, Dirk S., Künzel, Sven, Rupp, Oliver, Loyau, Adeline, Denoël, Mathieu, Valbuena-Ureña, Emilio, and Steinfartz, Sebastian. 2013. “What remains from a 454 run: estimation of success rates of microsatellite loci development in selected newt species (Calotriton asper, Lissotriton helveticus, and Triturus cristatus) and comparison with Illumina-based approaches”. Ecology and Evolution 3 (11): 3947-3957.
-
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908Wibberg, Daniel, Jelonek, Lukas, Rupp, Oliver, Kröber, Magdalena, Eikmeyer, Felix Gregor, Goesmann, Alexander, Hartmann, Anton, et al. 2013. “Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14”. Journal of Biotechnology 167 (2): 142-155.
-
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943Vences, Miguel, Hauswaldt, Susanne, Steinfartz, Sebastian, Rupp, Oliver, Goesmann, Alexander, Künzel, Sven, Orozco-Terwengel, Pablo, et al. 2013. “Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana”. Molecular phylogenetics and evolution 68 (3): 657-670.
-
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581Brinkrolf, Karina, Rupp, Oliver, Laux, Holger, Kollin, Florian, Ernst, Wolfgang, Linke, Burkhard, Kofler, Rudolf, et al. 2013. “Chinese hamster genome sequenced from sorted chromosomes”. Nature Biotechnology 31 (8): 694-695.
-
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668Bogen, Christian, Al-Dilaimi, Arwa, Albersmeier, Andreas, Wichmann, Julian, Grundmann, Michael, Rupp, Oliver, Lauersen, Kyle J., et al. 2013. “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production”. BMC Genomics 14 (1): 926.
-
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202Zakrzewski, Martha, Bekel, Thomas, Ander, Christina, Pühler, Alfred, Rupp, Oliver, Stoye, Jens, Schlüter, Andreas, and Goesmann, Alexander. 2013. “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”. Journal of Biotechnology 167 (2): 156-165.
-
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364Meleady, Paula, Hoffrogge, Raimund, Henry, Michael, Rupp, Oliver, Bort, Juan Hernandez, Clarke, Colin, Brinkrolf, Karina, et al. 2012. “Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics”. Biotechnology and Bioengineering 109 (6): 1386-1394.
-
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002Schneider, Jessica, Rupp, Oliver, Trost, Eva, Jaenicke, Sebastian, Passoth, V., Goesmann, Alexander, Tauch, Andreas, and Brinkrolf, Karina. 2012. “Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities”. FEMS Yeast Research 12 (3): 382-386.
-
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526Hackl, Matthias, Jadhav, Vaibhav, Jakobi, Tobias, Rupp, Oliver, Brinkrolf, Karina, Goesmann, Alexander, Pühler, Alfred, Noll, Thomas, Borth, Nicole, and Grillari, Johannes. 2012. “Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines”. Journal of Biotechnology 158 (3): 151-155.
-
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768Becker, Jennifer, Timmermann, Christina, Jakobi, Tobias, Rupp, Oliver, Szczepanowski, Rafael, Hackl, Matthias, Goesmann, Alexander, et al. 2011. “Next-generation sequencing of the CHO cell transcriptome”, BMC Proceedings, 5 (Suppl. 8): P6.
-
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Wibberg, Daniel, Blom, Jochen, Jaenicke, Sebastian, Kollin, Florian, Rupp, Oliver, Scharf, Birgit, Schneiker-Bekel, Susanne, et al. 2011. “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”. Journal of Biotechnology 155 (1): 50-62.
-
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576Becker, Jennifer, Hackel, M, Jakobi, Tobias, Rupp, Oliver, Schneider, Jessica, Szczepanowski, Rafael, Bekel, Thomas, et al. 2011. “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”. Journal of Biotechnology 156 (3): 227-235.
-
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447Bekel, Thomas, Henckel, Kolja, Küster, Helge, Meyer, Folker, Mittard-Runte, Virginie, Neuweger, Heiko, Paarmann, Daniel, et al. 2009. “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”. Journal of Biotechnology 140 (1-2): 3-12.