23 Publikationen

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  • [23]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996 OA
    Wibberg, D., Genzel, F., Verwaaijen, B., Blom, J., Rupp, O., Goesmann, A., Zrenner, R., et al. (2021). Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14. Journal of Fungi, 7(10), 832. https://doi.org/10.3390/jof7100832
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [22]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131 OA
    Pauli, M., Chakarov, N., Rupp, O., Kalinowski, J., Goesmann, A., Sorenson, M., Krüger, O., et al. (2015). De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite. BMC Genomics, 16(1), 1038. doi:10.1186/s12864-015-2254-1
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  • [21]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
    Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., et al. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology, 211, 20-30. doi:10.1016/j.jbiotec.2015.06.423
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  • [20]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718773
    Wippermann, A., Rupp, O., Brinkrolf, K., Hoffrogge, R., & Noll, T. (2015). The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells. Journal of Biotechnology, 199, 38-46. doi:10.1016/j.jbiotec.2015.01.014
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [19]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633946
    Caspers, B., Krause, E. T., Hendrix, R., Kopp, M., Rupp, O., Rosentreter, K., & Steinfartz, S. (2014). The more the better - polyandry and genetic similarity are positively linked to reproductive success in a natural population of terrestrial salamanders (Salamandra salamandra). Molecular Ecology, 23(1), 239-250. doi:10.1111/mec.12577
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  • [18]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819
    Wippermann, A., Klausing, S., Rupp, O., Albaum, S., Büntemeyer, H., Noll, T., & Hoffrogge, R. (2014). Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells. Applied Microbiology and Biotechnology, 98(2), 579-589. doi:10.1007/s00253-013-5282-2
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [17]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
    Dohm, J. C., Minoche, A. E., Holtgräwe, D., Capella-Gutiérrez, S., Zakrzewski, F., Tafer, H., Rupp, O., et al. (2014). The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature, 505(7484), 546-549. https://doi.org/10.1038/nature12817
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
    Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology, 178, 23-31. doi:10.1016/j.jbiotec.2014.02.021
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [15]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
    Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., et al. (2014). Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE, 9(1), e85568. doi:10.1371/journal.pone.0085568
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310
    Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Goesmann, A., Grosch, R., Pühler, A., et al. (2014). Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs). Fungal Biology, 118(9-10), 800-813. doi:10.1016/j.funbio.2014.06.007
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2634909 OA
    Drechsler, A., Geller, D., Freund, K., Schmeller, D. S., Künzel, S., Rupp, O., Loyau, A., et al. (2013). What remains from a 454 run: estimation of success rates of microsatellite loci development in selected newt species (Calotriton asper, Lissotriton helveticus, and Triturus cristatus) and comparison with Illumina-based approaches. Ecology and Evolution, 3(11), 3947-3957. doi:10.1002/ece3.764
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
    Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology, 167(2), 142-155. doi:10.1016/j.jbiotec.2012.12.010
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
    Vences, M., Hauswaldt, S., Steinfartz, S., Rupp, O., Goesmann, A., Künzel, S., Orozco-Terwengel, P., et al. (2013). Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana. Molecular phylogenetics and evolution, 68(3), 657-670. doi:10.1016/j.ympev.2013.04.014
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [10]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
    Brinkrolf, K., Rupp, O., Laux, H., Kollin, F., Ernst, W., Linke, B., Kofler, R., et al. (2013). Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology, 31(8), 694-695. doi:10.1038/nbt.2645
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668 OA
    Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 14(1), 926. doi:10.1186/1471-2164-14-926
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [8]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
    Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., et al. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology, 167(2), 156-165. doi:10.1016/j.jbiotec.2012.09.013
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [7]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364
    Meleady, P., Hoffrogge, R., Henry, M., Rupp, O., Bort, J. H., Clarke, C., Brinkrolf, K., et al. (2012). Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics. Biotechnology and Bioengineering, 109(6), 1386-1394. doi:10.1002/bit.24476
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
    Schneider, J., Rupp, O., Trost, E., Jaenicke, S., Passoth, V., Goesmann, A., Tauch, A., et al. (2012). Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research, 12(3), 382-386. doi:10.1111/j.1567-1364.2012.00791.x
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
    Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology, 158(3), 151-155. doi:10.1016/j.jbiotec.2012.01.019
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [4]
    2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
    Becker, J., Timmermann, C., Jakobi, T., Rupp, O., Szczepanowski, R., Hackl, M., Goesmann, A., et al. (2011). Next-generation sequencing of the CHO cell transcriptome. BMC Proceedings, 5(Suppl. 8), P6. doi:10.1186/1753-6561-5-S8-P6
    PUB | DOI
     
  • [3]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
    Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology, 155(1), 50-62. https://doi.org/10.1016/j.jbiotec.2011.01.010
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  • [2]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
    Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology, 156(3), 227-235. https://doi.org/10.1016/j.jbiotec.2011.09.014
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
    Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology, 140(1-2), 3-12. https://doi.org/10.1016/j.jbiotec.2009.01.006
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