Oliver Rupp
PEVZ-ID
23 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996Wibberg, D., Genzel, F., Verwaaijen, B., Blom, J., Rupp, O., Goesmann, A., Zrenner, R., et al. (2021). Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14. Journal of Fungi, 7(10), 832. https://doi.org/10.3390/jof7100832
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131Pauli, M., Chakarov, N., Rupp, O., Kalinowski, J., Goesmann, A., Sorenson, M., Krüger, O., et al. (2015). De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite. BMC Genomics, 16(1), 1038. doi:10.1186/s12864-015-2254-1
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., et al. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology, 211, 20-30. doi:10.1016/j.jbiotec.2015.06.423
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718773Wippermann, A., Rupp, O., Brinkrolf, K., Hoffrogge, R., & Noll, T. (2015). The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells. Journal of Biotechnology, 199, 38-46. doi:10.1016/j.jbiotec.2015.01.014
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633946Caspers, B., Krause, E. T., Hendrix, R., Kopp, M., Rupp, O., Rosentreter, K., & Steinfartz, S. (2014). The more the better - polyandry and genetic similarity are positively linked to reproductive success in a natural population of terrestrial salamanders (Salamandra salamandra). Molecular Ecology, 23(1), 239-250. doi:10.1111/mec.12577
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819Wippermann, A., Klausing, S., Rupp, O., Albaum, S., Büntemeyer, H., Noll, T., & Hoffrogge, R. (2014). Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells. Applied Microbiology and Biotechnology, 98(2), 579-589. doi:10.1007/s00253-013-5282-2
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946Dohm, J. C., Minoche, A. E., Holtgräwe, D., Capella-Gutiérrez, S., Zakrzewski, F., Tafer, H., Rupp, O., et al. (2014). The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature, 505(7484), 546-549. https://doi.org/10.1038/nature12817
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology, 178, 23-31. doi:10.1016/j.jbiotec.2014.02.021
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., et al. (2014). Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE, 9(1), e85568. doi:10.1371/journal.pone.0085568
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Goesmann, A., Grosch, R., Pühler, A., et al. (2014). Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs). Fungal Biology, 118(9-10), 800-813. doi:10.1016/j.funbio.2014.06.007
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2634909Drechsler, A., Geller, D., Freund, K., Schmeller, D. S., Künzel, S., Rupp, O., Loyau, A., et al. (2013). What remains from a 454 run: estimation of success rates of microsatellite loci development in selected newt species (Calotriton asper, Lissotriton helveticus, and Triturus cristatus) and comparison with Illumina-based approaches. Ecology and Evolution, 3(11), 3947-3957. doi:10.1002/ece3.764
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology, 167(2), 142-155. doi:10.1016/j.jbiotec.2012.12.010
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943Vences, M., Hauswaldt, S., Steinfartz, S., Rupp, O., Goesmann, A., Künzel, S., Orozco-Terwengel, P., et al. (2013). Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana. Molecular phylogenetics and evolution, 68(3), 657-670. doi:10.1016/j.ympev.2013.04.014
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581Brinkrolf, K., Rupp, O., Laux, H., Kollin, F., Ernst, W., Linke, B., Kofler, R., et al. (2013). Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology, 31(8), 694-695. doi:10.1038/nbt.2645
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 14(1), 926. doi:10.1186/1471-2164-14-926
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., et al. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology, 167(2), 156-165. doi:10.1016/j.jbiotec.2012.09.013
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364Meleady, P., Hoffrogge, R., Henry, M., Rupp, O., Bort, J. H., Clarke, C., Brinkrolf, K., et al. (2012). Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics. Biotechnology and Bioengineering, 109(6), 1386-1394. doi:10.1002/bit.24476
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002Schneider, J., Rupp, O., Trost, E., Jaenicke, S., Passoth, V., Goesmann, A., Tauch, A., et al. (2012). Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research, 12(3), 382-386. doi:10.1111/j.1567-1364.2012.00791.x
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology, 158(3), 151-155. doi:10.1016/j.jbiotec.2012.01.019
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768Becker, J., Timmermann, C., Jakobi, T., Rupp, O., Szczepanowski, R., Hackl, M., Goesmann, A., et al. (2011). Next-generation sequencing of the CHO cell transcriptome. BMC Proceedings, 5(Suppl. 8), P6. doi:10.1186/1753-6561-5-S8-P6
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology, 155(1), 50-62. https://doi.org/10.1016/j.jbiotec.2011.01.010
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology, 156(3), 227-235. https://doi.org/10.1016/j.jbiotec.2011.09.014
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology, 140(1-2), 3-12. https://doi.org/10.1016/j.jbiotec.2009.01.006