22 Publikationen

Alle markieren

[22]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
O. Rupp, K. Brinkrolf, C. Buerth, M. Kunigo, J. Schneider, S. Jaenicke, A. Goesmann, A. Pühler, K. - E. Jaeger, and J. F. Ernst, “The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms”, Journal of Biotechnology, 2015, 211, 20-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[21]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131
M. Pauli, N. Chakarov, O. Rupp, J. Kalinowski, A. Goesmann, M. Sorenson, O. Krüger, and J. Hoffman, “De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite”, BMC Genomics, 2015, 16, : 1038.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[20]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718773
A. Wippermann, O. Rupp, K. Brinkrolf, R. Hoffrogge, and T. Noll, “The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells”, Journal of Biotechnology, 2015, 199, 38-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633946
B. Caspers, E. T. Krause, R. Hendrix, M. Kopp, O. Rupp, K. Rosentreter, and S. Steinfartz, “The more the better - polyandry and genetic similarity are positively linked to reproductive success in a natural population of terrestrial salamanders (Salamandra salamandra)”, Molecular Ecology, 2014, 23, 239-250.
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819
A. Wippermann, S. Klausing, O. Rupp, S. Albaum, H. Büntemeyer, T. Noll, and R. Hoffrogge, “Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells”, Applied Microbiology and Biotechnology, 2014, 98, 579-589.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
J. Becker, C. Timmermann, O. Rupp, S. Albaum, K. Brinkrolf, A. Goesmann, A. Pühler, A. Tauch, and T. Noll, “Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)”, Journal of biotechnology, 2014, 178, 23-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
O. Rupp, J. Becker, K. Brinkrolf, C. Timmermann, N. Borth, A. Pühler, T. Noll, and A. Goesmann, “Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines”, PLoS ONE, 2014, 9, e85568.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
J. C. Dohm, A. E. Minoche, D. Holtgräwe, S. Capella-Gutiérrez, F. Zakrzewski, H. Tafer, O. Rupp, T. Rosleff Sörensen, R. Stracke, R. Reinhardt, et al., “The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)”, Nature, 2014, 505, 546-549.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310
D. Wibberg, L. Jelonek, O. Rupp, M. Kröber, A. Goesmann, R. Grosch, A. Pühler, and A. Schlüter, “Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)”, Fungal Biology, 2014, 118, 800-813.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2634909
A. Drechsler, D. Geller, K. Freund, D. S. Schmeller, S. Künzel, O. Rupp, A. Loyau, M. Denoël, E. Valbuena-Ureña, and S. Steinfartz, “What remains from a 454 run: estimation of success rates of microsatellite loci development in selected newt species (Calotriton asper, Lissotriton helveticus, and Triturus cristatus) and comparison with Illumina-based approaches”, Ecology and Evolution, 2013, 3, 3947-3957.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[12]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
D. Wibberg, L. Jelonek, O. Rupp, M. Kröber, F. G. Eikmeyer, A. Goesmann, A. Hartmann, R. Borriss, R. Grosch, A. Pühler, et al., “Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14”, Journal of Biotechnology, 2013, 167, 142-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
M. Vences, S. Hauswaldt, S. Steinfartz, O. Rupp, A. Goesmann, S. Künzel, P. Orozco-Terwengel, D. R. Vieites, S. Nieto-Roman, S. Haas, et al., “Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana”, Molecular phylogenetics and evolution, 2013, 68, 657-670.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
K. Brinkrolf, O. Rupp, H. Laux, F. Kollin, W. Ernst, B. Linke, R. Kofler, S. Romand, F. Hesse, W. E. Budach, et al., “Chinese hamster genome sequenced from sorted chromosomes”, Nature Biotechnology, 2013, 31, 694-695.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
C. Bogen, A. Al-Dilaimi, A. Albersmeier, J. Wichmann, M. Grundmann, O. Rupp, K. J. Lauersen, O. Blifernez-Klassen, J. Kalinowski, A. Goesmann, et al., “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production”, BMC Genomics, 2013, 14, 926.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[8]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, T. Bekel, C. Ander, A. Pühler, O. Rupp, J. Stoye, A. Schlüter, and A. Goesmann, “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, 2013, 167, 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364
P. Meleady, R. Hoffrogge, M. Henry, O. Rupp, J. H. Bort, C. Clarke, K. Brinkrolf, S. Kelly, B. Müller, P. Doolan, et al., “Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics”, Biotechnology and Bioengineering, 2012, 109, 1386-1394.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
J. Schneider, O. Rupp, E. Trost, S. Jaenicke, V. Passoth, A. Goesmann, A. Tauch, and K. Brinkrolf, “Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities”, FEMS Yeast Research, 2012, 12, 382-386.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
M. Hackl, V. Jadhav, T. Jakobi, O. Rupp, K. Brinkrolf, A. Goesmann, A. Pühler, T. Noll, N. Borth, and J. Grillari, “Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines”, Journal of Biotechnology, 2012, 158, 151-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, J. Blom, S. Jaenicke, F. Kollin, O. Rupp, B. Scharf, S. Schneiker-Bekel, R. Szczepanowski, A. Goesmann, J. C. Setubal, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, 2011, 155, 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
J. Becker, M. Hackel, T. Jakobi, O. Rupp, J. Schneider, R. Szczepanowski, T. Bekel, N. Borth, A. Goesmann, J. Grillari, et al., “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”, Journal of Biotechnology, 2011, 156, 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
J. Becker, C. Timmermann, T. Jakobi, O. Rupp, R. Szczepanowski, M. Hackl, A. Goesmann, A. Tauch, N. Borth, J. Grillari, et al., “Next-generation sequencing of the CHO cell transcriptome”, BMC Proceedings, 2011, 5, P6.
PUB | DOI
 
[1]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
T. Bekel, K. Henckel, H. Küster, F. Meyer, V. Mittard-Runte, H. Neuweger, D. Paarmann, O. Rupp, M. Zakrzewski, A. Pühler, et al., “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”, Journal of Biotechnology, 2009, 140, 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 

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Zitationsstil: angewandte-chemie

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22 Publikationen

Alle markieren

[22]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
O. Rupp, K. Brinkrolf, C. Buerth, M. Kunigo, J. Schneider, S. Jaenicke, A. Goesmann, A. Pühler, K. - E. Jaeger, and J. F. Ernst, “The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms”, Journal of Biotechnology, 2015, 211, 20-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[21]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131
M. Pauli, N. Chakarov, O. Rupp, J. Kalinowski, A. Goesmann, M. Sorenson, O. Krüger, and J. Hoffman, “De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite”, BMC Genomics, 2015, 16, : 1038.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[20]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718773
A. Wippermann, O. Rupp, K. Brinkrolf, R. Hoffrogge, and T. Noll, “The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells”, Journal of Biotechnology, 2015, 199, 38-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633946
B. Caspers, E. T. Krause, R. Hendrix, M. Kopp, O. Rupp, K. Rosentreter, and S. Steinfartz, “The more the better - polyandry and genetic similarity are positively linked to reproductive success in a natural population of terrestrial salamanders (Salamandra salamandra)”, Molecular Ecology, 2014, 23, 239-250.
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819
A. Wippermann, S. Klausing, O. Rupp, S. Albaum, H. Büntemeyer, T. Noll, and R. Hoffrogge, “Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells”, Applied Microbiology and Biotechnology, 2014, 98, 579-589.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
J. Becker, C. Timmermann, O. Rupp, S. Albaum, K. Brinkrolf, A. Goesmann, A. Pühler, A. Tauch, and T. Noll, “Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)”, Journal of biotechnology, 2014, 178, 23-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
O. Rupp, J. Becker, K. Brinkrolf, C. Timmermann, N. Borth, A. Pühler, T. Noll, and A. Goesmann, “Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines”, PLoS ONE, 2014, 9, e85568.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
J. C. Dohm, A. E. Minoche, D. Holtgräwe, S. Capella-Gutiérrez, F. Zakrzewski, H. Tafer, O. Rupp, T. Rosleff Sörensen, R. Stracke, R. Reinhardt, et al., “The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)”, Nature, 2014, 505, 546-549.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310
D. Wibberg, L. Jelonek, O. Rupp, M. Kröber, A. Goesmann, R. Grosch, A. Pühler, and A. Schlüter, “Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)”, Fungal Biology, 2014, 118, 800-813.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2634909
A. Drechsler, D. Geller, K. Freund, D. S. Schmeller, S. Künzel, O. Rupp, A. Loyau, M. Denoël, E. Valbuena-Ureña, and S. Steinfartz, “What remains from a 454 run: estimation of success rates of microsatellite loci development in selected newt species (Calotriton asper, Lissotriton helveticus, and Triturus cristatus) and comparison with Illumina-based approaches”, Ecology and Evolution, 2013, 3, 3947-3957.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[12]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
D. Wibberg, L. Jelonek, O. Rupp, M. Kröber, F. G. Eikmeyer, A. Goesmann, A. Hartmann, R. Borriss, R. Grosch, A. Pühler, et al., “Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14”, Journal of Biotechnology, 2013, 167, 142-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
M. Vences, S. Hauswaldt, S. Steinfartz, O. Rupp, A. Goesmann, S. Künzel, P. Orozco-Terwengel, D. R. Vieites, S. Nieto-Roman, S. Haas, et al., “Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana”, Molecular phylogenetics and evolution, 2013, 68, 657-670.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
K. Brinkrolf, O. Rupp, H. Laux, F. Kollin, W. Ernst, B. Linke, R. Kofler, S. Romand, F. Hesse, W. E. Budach, et al., “Chinese hamster genome sequenced from sorted chromosomes”, Nature Biotechnology, 2013, 31, 694-695.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
C. Bogen, A. Al-Dilaimi, A. Albersmeier, J. Wichmann, M. Grundmann, O. Rupp, K. J. Lauersen, O. Blifernez-Klassen, J. Kalinowski, A. Goesmann, et al., “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production”, BMC Genomics, 2013, 14, 926.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[8]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, T. Bekel, C. Ander, A. Pühler, O. Rupp, J. Stoye, A. Schlüter, and A. Goesmann, “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, 2013, 167, 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364
P. Meleady, R. Hoffrogge, M. Henry, O. Rupp, J. H. Bort, C. Clarke, K. Brinkrolf, S. Kelly, B. Müller, P. Doolan, et al., “Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics”, Biotechnology and Bioengineering, 2012, 109, 1386-1394.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
J. Schneider, O. Rupp, E. Trost, S. Jaenicke, V. Passoth, A. Goesmann, A. Tauch, and K. Brinkrolf, “Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities”, FEMS Yeast Research, 2012, 12, 382-386.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
M. Hackl, V. Jadhav, T. Jakobi, O. Rupp, K. Brinkrolf, A. Goesmann, A. Pühler, T. Noll, N. Borth, and J. Grillari, “Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines”, Journal of Biotechnology, 2012, 158, 151-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, J. Blom, S. Jaenicke, F. Kollin, O. Rupp, B. Scharf, S. Schneiker-Bekel, R. Szczepanowski, A. Goesmann, J. C. Setubal, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, 2011, 155, 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
J. Becker, M. Hackel, T. Jakobi, O. Rupp, J. Schneider, R. Szczepanowski, T. Bekel, N. Borth, A. Goesmann, J. Grillari, et al., “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”, Journal of Biotechnology, 2011, 156, 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
J. Becker, C. Timmermann, T. Jakobi, O. Rupp, R. Szczepanowski, M. Hackl, A. Goesmann, A. Tauch, N. Borth, J. Grillari, et al., “Next-generation sequencing of the CHO cell transcriptome”, BMC Proceedings, 2011, 5, P6.
PUB | DOI
 
[1]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
T. Bekel, K. Henckel, H. Küster, F. Meyer, V. Mittard-Runte, H. Neuweger, D. Paarmann, O. Rupp, M. Zakrzewski, A. Pühler, et al., “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”, Journal of Biotechnology, 2009, 140, 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 

Suche

Publikationen filtern

Darstellung / Sortierung

Zitationsstil: angewandte-chemie

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